PDB Chemical Component X45
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for X45
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C2 |
C1 |
1.505 |
1.506 |
| C1 |
H1 |
1.100 |
1.090 |
| C1 |
H1A |
1.100 |
1.091 |
| C1 |
H1B |
1.100 |
1.090 |
| C11 |
N1 |
1.362 |
1.373 |
| N1 |
C10 |
1.362 |
1.349 |
| N1 |
C12 |
1.460 |
1.465 |
| C8 |
O1 |
1.424 |
1.430 |
| C7 |
O1 |
1.372 |
1.359 |
| C7 |
C2 |
1.407 |
1.387 |
| C3 |
C2 |
1.404 |
1.382 |
| N2 |
C11 |
1.302 |
1.298 |
| N2 |
C9 |
1.498 |
1.471 |
| C10 |
O2 |
1.219 |
1.212 |
| C4 |
C3 |
1.402 |
1.382 |
| C3 |
H3 |
1.080 |
1.080 |
| N3 |
C11 |
1.372 |
1.374 |
| N3 |
HN3 |
1.000 |
0.970 |
| N3 |
HN3A |
1.000 |
0.970 |
| C5 |
C4 |
1.402 |
1.383 |
| C9 |
C4 |
1.537 |
1.507 |
| N4 |
C23 |
1.358 |
1.317 |
| N4 |
C22 |
1.353 |
1.319 |
| C5 |
C6 |
1.402 |
1.380 |
| C5 |
H5 |
1.080 |
1.080 |
| C6 |
C7 |
1.396 |
1.388 |
| C6 |
H6 |
1.080 |
1.080 |
| C8 |
H8 |
1.100 |
1.090 |
| C8 |
H8A |
1.100 |
1.090 |
| C8 |
H8B |
1.100 |
1.090 |
| C13 |
C9 |
1.539 |
1.507 |
| C9 |
C10 |
1.538 |
1.516 |
| C12 |
H12 |
1.100 |
1.091 |
| C12 |
H12A |
1.100 |
1.090 |
| C12 |
H12B |
1.100 |
1.090 |
| C18 |
C13 |
1.404 |
1.380 |
| C13 |
C14 |
1.406 |
1.384 |
| C15 |
C14 |
1.405 |
1.383 |
| C14 |
H14 |
1.080 |
1.079 |
| C16 |
C15 |
1.398 |
1.381 |
| C15 |
H15 |
1.079 |
1.080 |
| C17 |
C16 |
1.407 |
1.393 |
| C16 |
H16 |
1.080 |
1.080 |
| C19 |
C17 |
1.472 |
1.484 |
| C17 |
C18 |
1.407 |
1.394 |
| C18 |
H18 |
1.079 |
1.080 |
| C23 |
C19 |
1.398 |
1.394 |
| C19 |
C20 |
1.403 |
1.397 |
| C21 |
C20 |
1.397 |
1.384 |
| C20 |
H20 |
1.080 |
1.081 |
| C22 |
C21 |
1.387 |
1.382 |
| C21 |
H21 |
1.081 |
1.080 |
| C22 |
H22 |
1.080 |
1.081 |
| C23 |
H23 |
1.080 |
1.080 |
Bond Angles for X45
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
H1 |
109.5 |
109.5 |
| C2 |
C1 |
H1A |
109.5 |
109.5 |
| C2 |
C1 |
H1B |
109.5 |
109.5 |
| H1 |
C1 |
H1A |
109.4 |
109.5 |
| H1 |
C1 |
H1B |
109.5 |
109.5 |
| H1A |
C1 |
H1B |
109.5 |
109.4 |
| C11 |
N1 |
C12 |
127.4 |
124.6 |
| C10 |
N1 |
C12 |
123.6 |
124.7 |
| N1 |
C10 |
O2 |
126.6 |
127.5 |
| N1 |
C10 |
C9 |
107.2 |
105.1 |
| N1 |
C12 |
H12 |
109.5 |
109.5 |
| N1 |
C12 |
H12A |
109.5 |
109.5 |
| N1 |
C12 |
H12B |
109.5 |
109.5 |
| C9 |
N2 |
C11 |
107.9 |
107.6 |
| N2 |
C11 |
N3 |
124.2 |
123.7 |
| N2 |
C9 |
C4 |
110.5 |
110.5 |
| N2 |
C9 |
C10 |
101.1 |
103.9 |
| C4 |
C3 |
H3 |
119.3 |
120.0 |
| C11 |
N3 |
HN3 |
120.0 |
120.0 |
| C11 |
N3 |
HN3A |
120.0 |
120.0 |
| HN3 |
N3 |
HN3A |
120.0 |
120.0 |
| C22 |
N4 |
C23 |
117.2 |
121.8 |
| N4 |
C23 |
C19 |
124.4 |
120.6 |
| N4 |
C23 |
H23 |
117.8 |
119.7 |
| N4 |
C22 |
C21 |
123.3 |
121.1 |
| N4 |
C22 |
H22 |
118.4 |
119.4 |
| C6 |
C5 |
H5 |
119.3 |
120.0 |
| C5 |
C6 |
C7 |
120.3 |
120.0 |
| C5 |
C6 |
H6 |
119.8 |
120.1 |
| C7 |
C6 |
H6 |
119.8 |
120.0 |
| H8 |
C8 |
H8A |
109.4 |
109.5 |
| H8 |
C8 |
H8B |
109.5 |
109.5 |
| H8A |
C8 |
H8B |
109.5 |
109.5 |
| H12 |
C12 |
H12A |
109.4 |
109.5 |
| H12 |
C12 |
H12B |
109.5 |
109.4 |
| H12A |
C12 |
H12B |
109.5 |
109.5 |
| C13 |
C14 |
H14 |
119.9 |
119.9 |
| C15 |
C14 |
H14 |
119.8 |
119.9 |
| C16 |
C15 |
H15 |
119.4 |
119.9 |
| C17 |
C16 |
H16 |
120.2 |
120.1 |
| C17 |
C18 |
H18 |
118.5 |
120.0 |
| C19 |
C20 |
H20 |
119.7 |
120.8 |
| C21 |
C20 |
H20 |
119.7 |
120.8 |
| C22 |
C21 |
H21 |
120.9 |
120.4 |
Torsion Angles for X45
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H1 |
C1 |
C2 |
H1A |
240.0 |
240.0 |
| H1 |
C1 |
C2 |
H1B |
120.0 |
120.0 |
| H1A |
C1 |
C2 |
H1B |
240.0 |
240.1 |
| C2 |
C1 |
H1 |
H1A |
120.0 |
120.0 |
| C2 |
C1 |
H1 |
H1B |
240.0 |
240.0 |
| H1A |
C1 |
H1 |
H1B |
120.0 |
119.9 |
| C2 |
C1 |
H1A |
H1 |
240.0 |
240.0 |
| C2 |
C1 |
H1A |
H1B |
120.0 |
120.0 |
| H1 |
C1 |
H1A |
H1B |
240.0 |
240.0 |
| C2 |
C1 |
H1B |
H1 |
120.0 |
120.0 |
| C2 |
C1 |
H1B |
H1A |
240.0 |
240.0 |
| H1 |
C1 |
H1B |
H1A |
120.0 |
120.0 |
| C10 |
N1 |
C11 |
C12 |
180.5 |
179.8 |
| C11 |
N1 |
C12 |
H12 |
180.0 |
269.7 |
| C11 |
N1 |
C12 |
H12A |
300.0 |
29.7 |
| C11 |
N1 |
C12 |
H12B |
60.0 |
149.8 |
| C11 |
N1 |
C10 |
C12 |
179.5 |
180.2 |
| C10 |
N1 |
C12 |
H12 |
359.5 |
89.9 |
| C10 |
N1 |
C12 |
H12A |
119.4 |
209.9 |
| C10 |
N1 |
C12 |
H12B |
239.4 |
330.0 |
| N2 |
C9 |
C10 |
N1 |
356.4 |
359.6 |
| C12 |
N1 |
C10 |
O2 |
1.9 |
0.1 |
| C12 |
N1 |
C10 |
C9 |
179.4 |
180.0 |
| H12 |
C12 |
N1 |
H12A |
240.1 |
240.0 |
| H12 |
C12 |
N1 |
H12B |
120.0 |
119.9 |
| H12A |
C12 |
N1 |
H12B |
240.0 |
239.9 |
| C7 |
C2 |
C1 |
H1 |
90.1 |
269.7 |
| C7 |
C2 |
C1 |
H1A |
210.0 |
29.7 |
| C7 |
C2 |
C1 |
H1B |
330.0 |
149.7 |
| C3 |
C2 |
C1 |
H1 |
269.9 |
90.0 |
| C3 |
C2 |
C1 |
H1A |
29.9 |
210.0 |
| C3 |
C2 |
C1 |
H1B |
149.9 |
330.0 |
| N2 |
C11 |
N1 |
C12 |
185.9 |
180.3 |
| C11 |
N2 |
C9 |
C4 |
249.3 |
241.4 |
| C11 |
N2 |
C9 |
C10 |
7.2 |
0.4 |
| N2 |
C11 |
N3 |
HN3 |
0.0 |
359.9 |
| N2 |
C11 |
N3 |
HN3A |
180.0 |
180.0 |
| N1 |
C10 |
C9 |
N2 |
356.4 |
359.6 |
| C9 |
N2 |
C11 |
N3 |
172.9 |
180.0 |
| O2 |
C10 |
N1 |
C12 |
1.9 |
0.1 |
| N1 |
C10 |
O2 |
C9 |
177.1 |
179.9 |
| N2 |
C9 |
C10 |
O2 |
174.0 |
179.6 |
| N2 |
C9 |
C4 |
C3 |
145.1 |
160.2 |
| N3 |
C11 |
N1 |
C12 |
4.3 |
359.9 |
| HN3 |
N3 |
C11 |
HN3A |
180.0 |
179.9 |
| C11 |
N3 |
HN3 |
HN3A |
180.0 |
180.1 |
| C11 |
N3 |
HN3A |
HN3 |
180.0 |
179.9 |
| N2 |
C9 |
C4 |
C5 |
325.4 |
340.2 |
| C5 |
C4 |
C3 |
H3 |
180.1 |
180.0 |
| N1 |
C10 |
C9 |
C4 |
113.8 |
118.4 |
| C4 |
C9 |
N2 |
C11 |
249.3 |
241.4 |
| N2 |
C9 |
C4 |
C10 |
111.5 |
114.7 |
| C9 |
C4 |
C3 |
H3 |
0.4 |
360.0 |
| C23 |
N4 |
C22 |
C21 |
359.8 |
360.0 |
| C23 |
N4 |
C22 |
H22 |
179.8 |
180.0 |
| C22 |
N4 |
C23 |
C19 |
0.4 |
0.0 |
| C22 |
N4 |
C23 |
H23 |
180.4 |
180.0 |
| N4 |
C22 |
C21 |
H21 |
180.1 |
180.0 |
| C7 |
C6 |
C5 |
H6 |
180.0 |
179.6 |
| H5 |
C5 |
C6 |
C7 |
180.0 |
179.8 |
| H5 |
C5 |
C6 |
H6 |
360.0 |
0.2 |
| C7 |
C6 |
C5 |
H5 |
180.0 |
179.8 |
| C5 |
C6 |
C7 |
H6 |
180.0 |
180.4 |
| H6 |
C6 |
C5 |
H5 |
360.0 |
0.2 |
| C5 |
C6 |
H6 |
C7 |
180.0 |
179.6 |
| H8A |
C8 |
H8 |
H8B |
120.0 |
120.1 |
| H8 |
C8 |
H8A |
H8B |
240.0 |
240.0 |
| H8 |
C8 |
H8B |
H8A |
119.9 |
120.0 |
| C9 |
C10 |
N1 |
C12 |
179.4 |
180.0 |
| N1 |
C10 |
C9 |
O2 |
182.4 |
180.1 |
| C10 |
C9 |
N2 |
C11 |
7.2 |
0.4 |
| N2 |
C9 |
C10 |
C4 |
242.6 |
241.3 |
| N1 |
C12 |
H12 |
H12A |
120.0 |
120.0 |
| N1 |
C12 |
H12 |
H12B |
240.0 |
240.0 |
| H12A |
C12 |
H12 |
H12B |
120.0 |
120.0 |
| N1 |
C12 |
H12A |
H12 |
240.0 |
240.0 |
| N1 |
C12 |
H12A |
H12B |
120.0 |
120.1 |
| H12 |
C12 |
H12A |
H12B |
240.0 |
240.1 |
| N1 |
C12 |
H12B |
H12 |
120.0 |
120.0 |
| N1 |
C12 |
H12B |
H12A |
240.0 |
239.9 |
| H12 |
C12 |
H12B |
H12A |
119.9 |
120.0 |
| C18 |
C13 |
C14 |
H14 |
180.5 |
180.2 |
| C15 |
C14 |
C13 |
H14 |
180.0 |
180.1 |
| C13 |
C14 |
C15 |
H14 |
180.0 |
179.9 |
| C16 |
C15 |
C14 |
H14 |
179.5 |
180.0 |
| H15 |
C15 |
C14 |
H14 |
359.5 |
0.1 |
| C17 |
C16 |
C15 |
H15 |
180.4 |
180.0 |
| H16 |
C16 |
C15 |
H15 |
0.4 |
360.0 |
| N4 |
C23 |
C19 |
C17 |
179.9 |
180.0 |
| C19 |
C17 |
C16 |
H16 |
0.4 |
0.0 |
| C19 |
C17 |
C18 |
H18 |
359.7 |
359.7 |
| C18 |
C17 |
C16 |
H16 |
179.7 |
179.8 |
| N4 |
C23 |
C19 |
H23 |
180.0 |
180.0 |
| C23 |
C19 |
C20 |
H20 |
180.3 |
180.0 |
| N4 |
C23 |
C19 |
C20 |
359.6 |
360.0 |
| C21 |
C20 |
C19 |
H20 |
180.0 |
180.1 |
| N4 |
C22 |
C21 |
C20 |
0.1 |
0.0 |
| C19 |
C20 |
C21 |
H20 |
180.0 |
179.9 |
| C21 |
C22 |
N4 |
C23 |
359.8 |
360.0 |
| N4 |
C22 |
C21 |
H22 |
180.0 |
180.0 |
| C22 |
C21 |
C20 |
H20 |
179.9 |
180.0 |
| H21 |
C21 |
C20 |
H20 |
359.9 |
0.1 |
| H22 |
C22 |
N4 |
C23 |
179.8 |
180.0 |
| N4 |
C22 |
H22 |
C21 |
180.0 |
180.0 |
| H22 |
C22 |
C21 |
H21 |
0.1 |
360.0 |
| N4 |
C23 |
H23 |
C19 |
180.0 |
180.0 |