PDB Chemical Component X40

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for X40

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C07	N01	1.376	1.313
N01	C08	1.303	1.302
C08	N02	1.315	1.377
N02	C09	1.306	1.398
N02	HN02	1.000	0.969
C15	N03	1.378	1.317
N03	C14	1.382	1.320
N04	C07	1.263	1.385
N04	HN04	1.000	0.970
N04	HN0A	1.000	0.969
S25	N05	1.685	1.656
N05	HN05	1.000	0.970
N05	HN0B	1.000	0.970
C07	C06	1.394	1.383
C10	C06	1.396	1.407
C06	S24	1.723	1.762
C08	S24	1.732	1.708
C09	C20	1.432	1.389
C09	C16	1.447	1.390
O21	C10	1.234	1.219
C10	C11	1.395	1.480
C11	C15	1.409	1.394
C11	C12	1.436	1.400
C12	C13	1.413	1.384
C12	H12	1.080	1.080
C13	C14	1.404	1.383
C13	H13	1.080	1.079
C14	H14	1.080	1.081
C15	H15	1.080	1.080
C16	C17	1.417	1.381
C16	H16	1.080	1.080
C17	C18	1.424	1.383
C17	H17	1.080	1.080
C19	C18	1.424	1.383
C18	S25	1.764	1.762
C20	C19	1.418	1.381
C19	H19	1.080	1.081
C20	H20	1.080	1.080
O22	S25	1.432	1.421
S25	O23	1.454	1.422

Bond Angles for X40

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C07	N01	C08	110.5	117.3
N01	C08	N02	119.8	124.6
N01	C08	S24	115.0	110.8
C08	N02	C09	128.9	120.0
C08	N02	HN02	115.5	120.1
C09	N02	HN02	115.6	120.0
N02	C09	C20	117.1	120.1
N02	C09	C16	124.3	120.1
N03	C14	C13	122.9	121.1
N03	C14	H14	118.6	119.5
C07	N04	HN04	109.5	120.0
C07	N04	HN0A	109.5	120.0
N04	C07	C06	122.8	123.2
HN04	N04	HN0A	109.5	120.0
S25	N05	HN05	109.5	120.1
S25	N05	HN0B	109.5	120.0
HN05	N05	HN0B	109.4	120.0
C07	C06	S24	108.2	107.7
C10	C06	S24	126.4	126.2
C06	S24	C08	90.2	90.6
C16	C09	C20	118.6	119.8
C09	C20	C19	120.8	119.9
C09	C20	H20	119.6	120.0
C09	C16	C17	120.4	120.0
C09	C16	H16	119.8	120.0
C10	C11	C15	120.6	120.6
C10	C11	C12	122.7	120.5
C12	C11	C15	116.6	118.9
C11	C15	H15	118.3	119.7
C11	C12	C13	121.0	118.3
C11	C12	H12	119.5	120.9
C13	C12	H12	119.5	120.8
C12	C13	C14	117.9	119.3
C12	C13	H13	121.1	120.4
C14	C13	H13	121.1	120.4
C13	C14	H14	118.5	119.4
C17	C16	H16	119.8	120.1
C16	C17	C18	119.9	120.0
C16	C17	H17	120.1	119.9
C18	C17	H17	120.0	120.0
C17	C18	S25	120.2	119.9
C19	C18	S25	119.3	120.0
C18	S25	O22	107.5	106.4
C18	S25	O23	109.4	106.4
C20	C19	H19	120.1	120.0
O22	S25	O23	110.0	123.1

Torsion Angles for X40

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C07	N01	C08	N02	179.9	180.0
C07	N01	C08	S24	0.2	359.9
N01	C08	N02	C09	156.1	6.5
N01	C08	N02	HN02	336.1	186.5
C06	S24	C08	N01	359.6	0.0
N01	C08	N02	S24	180.3	179.9
C09	N02	C08	HN02	180.0	180.0
C08	N02	C09	C20	171.3	206.8
C08	N02	C09	C16	350.9	27.1
C08	N02	C09	HN02	180.0	180.0
C16	C09	N02	C20	179.6	180.3
N02	C09	C20	C19	179.4	179.7
N02	C09	C20	H20	359.4	0.1
N02	C09	C16	C17	180.6	180.0
N02	C09	C16	H16	0.6	360.0
C08	N02	HN02	C09	180.0	180.0
HN02	N02	C09	C20	351.3	26.7
HN02	N02	C09	C16	170.9	207.0
C15	N03	C14	H14	180.5	180.0
C12	C13	C14	N03	359.8	0.1
N03	C14	C13	H13	179.8	180.0
C13	C14	N03	H14	180.0	180.0
N04	C07	N01	C08	180.0	180.1
HN04	N04	C07	HN0A	240.0	179.9
N04	C07	C06	S24	179.7	179.9
C07	N04	HN04	HN0A	120.0	180.1
HN04	N04	C07	C06	179.8	180.0
C07	N04	HN0A	HN04	240.0	179.9
HN0A	N04	C07	C06	299.8	0.0
HN05	N05	S25	HN0B	240.0	180.0
S25	N05	HN05	HN0B	120.0	180.0
S25	N05	HN0B	HN05	240.0	180.0
C06	C07	N01	C08	0.2	0.1
C06	C07	N04	HN04	179.8	180.0
C06	C07	N04	HN0A	299.8	0.0
C10	C06	C07	S24	180.0	180.1
C07	C06	S24	C08	0.5	0.0
C07	C06	C10	S24	180.0	179.9
C10	C06	S24	C08	180.5	179.9
N01	C08	S24	C06	359.6	0.0
N01	C08	S24	N02	179.7	180.1
S24	C08	N02	C09	335.8	186.6
S24	C08	N02	HN02	155.8	6.6
C20	C09	N02	HN02	351.3	26.7
N02	C09	C20	C16	179.6	180.3
C20	C09	C16	C17	0.2	0.3
C20	C09	C16	H16	180.2	180.3
C09	C20	C19	H19	180.1	180.3
C16	C09	N02	HN02	170.9	207.0
N02	C09	C16	C20	180.4	179.7
C16	C09	C20	C19	359.7	359.4
C16	C09	C20	H20	179.8	179.8
C17	C16	C09	H16	180.0	180.0
C09	C16	C17	C18	0.0	360.0
C09	C16	C17	H17	180.0	180.0
O21	C10	C06	S24	188.6	186.7
C11	C10	C06	S24	9.8	6.7
C12	C11	C10	C15	180.2	180.1
C10	C11	C15	H15	0.1	0.1
C10	C11	C12	C13	180.3	180.0
C10	C11	C12	H12	0.3	359.9
C10	C11	C15	C12	180.2	180.1
C15	C11	C12	C13	0.5	0.1
C15	C11	C12	H12	180.5	179.9
C10	C11	C12	C15	179.8	179.9
C12	C11	C15	H15	179.9	180.0
C13	C12	C11	H12	180.0	180.1
C11	C12	C13	C14	359.7	359.9
C11	C12	C13	H13	179.7	180.0
N03	C14	C13	C12	359.8	0.1
C13	C12	C11	C15	0.5	0.1
C11	C12	C13	H12	180.0	179.9
C14	C13	C12	H13	180.0	179.9
C12	C13	C14	H14	179.8	180.1
H12	C12	C11	C15	180.5	179.9
C11	C12	H12	C13	180.0	180.1
H12	C12	C13	C14	179.7	180.0
H12	C12	C13	H13	359.7	0.1
N03	C14	C13	H14	180.0	180.0
C14	C13	C12	H12	179.7	180.0
C12	C13	C14	H13	180.0	180.1
H13	C13	C12	H12	359.7	0.1
C12	C13	H13	C14	180.0	179.9
H13	C13	C14	H14	359.8	360.0
N03	C14	H14	C13	180.0	180.0
H14	C14	C13	H13	359.8	360.0
C17	C16	C09	C20	0.2	0.3
C09	C16	C17	H16	180.0	180.0
C18	C17	C16	H17	180.0	180.0
C16	C17	C18	S25	178.8	180.0
H16	C16	C09	C20	180.2	180.3
C09	C16	H16	C17	180.0	180.0
H16	C16	C17	C18	180.0	180.0
H16	C16	C17	H17	0.0	0.0
C18	C17	C16	H16	180.0	180.0
C16	C17	C18	H17	180.0	180.0
C19	C18	C17	S25	181.1	180.0
C17	C18	S25	O22	283.8	336.5
C17	C18	S25	O23	164.3	203.6
H17	C17	C16	H16	0.0	0.0
C16	C17	H17	C18	180.0	180.0
H17	C17	C18	S25	358.7	0.0
C09	C20	C19	C18	0.1	0.6
C19	C18	C17	H17	179.8	180.1
C17	C18	C19	S25	178.9	180.0
C19	C18	S25	O22	102.8	156.4
C19	C18	S25	O23	343.3	23.5
C18	S25	N05	HN05	180.0	150.0
C18	S25	N05	HN0B	300.0	330.0
S25	C18	C17	H17	358.7	0.0
O22	S25	C18	O23	119.5	132.9
C09	C20	C19	H20	180.0	180.4
C20	C19	C18	S25	181.2	179.7
H19	C19	C18	S25	1.2	0.0
C09	C20	H20	C19	180.0	179.6
H20	C20	C19	H19	0.1	359.9
O22	S25	N05	HN05	298.3	263.6
O22	S25	N05	HN0B	58.2	83.6
C18	S25	O22	O23	240.9	237.0
O23	S25	N05	HN05	58.6	36.4
O23	S25	N05	HN0B	178.5	216.4
C18	S25	O23	O22	117.9	123.0