PDB Chemical Component X3H

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for X3H

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C14 C13 1.515 1.507
C13 C12 1.351 1.310
C18 C10 1.513 1.530
C12 C11 1.513 1.507
C11 C10 1.512 1.531
C10 C09 1.517 1.530
O09 C09 1.409 1.429
O09 C19 1.416 1.428
C09 C08 1.513 1.530
C08 C17 1.514 1.530
C08 C07 1.514 1.529
C07 C06 1.513 1.530
C07 O07 1.407 1.429
C06 C05 1.514 1.530
C15 C16 1.514 1.530
C15 C04 1.522 1.530
O06 C05 1.405 1.455
O06 C01 1.409 1.349
O01 C01 1.214 1.208
C05 C04 1.512 1.532
C01 C02 1.522 1.512
C04 C03 1.511 1.531
C02 C03 1.516 1.533
C16 H163 1.100 1.089
C16 H161 1.100 1.090
C16 H162 1.100 1.090
C15 H151 1.100 1.090
C15 H152 1.100 1.090
C04 H04 1.100 1.089
C03 H031 1.100 1.090
C03 H1 1.100 1.090
C02 H021 1.100 1.090
C02 H2 1.099 1.090
C05 H05 1.100 1.090
C06 H061 1.100 1.089
C06 H062 1.100 1.091
C07 H07 1.100 1.090
O07 H071 0.950 0.967
C08 H08 1.100 1.090
C17 H172 1.100 1.091
C17 H173 1.100 1.090
C17 H171 1.100 1.089
C09 H09 1.100 1.090
C19 H192 1.100 1.090
C19 H191 1.100 1.090
C19 H193 1.100 1.090
C10 H10 1.100 1.090
C18 H183 1.100 1.090
C18 H181 1.100 1.090
C18 H182 1.100 1.090
C11 H111 1.100 1.090
C11 H112 1.100 1.090
C12 H12 1.080 1.080
C13 H13 1.080 1.080
C14 H143 1.100 1.090
C14 H141 1.100 1.090
C14 H142 1.100 1.089

Bond Angles for X3H

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C14 C13 C12 119.6 119.9
C14 C13 H13 120.2 120.1
C13 C14 H143 109.5 109.5
C13 C14 H141 109.4 109.4
C13 C14 H142 109.5 109.5
C13 C12 C11 120.5 120.0
C13 C12 H12 119.8 120.0
C12 C13 H13 120.2 120.0
C18 C10 C11 108.7 109.5
C18 C10 C09 111.0 109.5
C18 C10 H10 109.2 109.5
C10 C18 H183 109.5 109.4
C10 C18 H181 109.5 109.4
C10 C18 H182 109.5 109.5
C12 C11 C10 109.0 109.5
C12 C11 H111 109.6 109.5
C12 C11 H112 109.6 109.5
C11 C12 H12 119.8 120.0
C11 C10 C09 109.6 109.5
C11 C10 H10 109.2 109.5
C10 C11 H111 109.6 109.4
C10 C11 H112 109.6 109.4
O09 C09 C10 110.3 109.5
C10 C09 C08 109.9 109.5
C10 C09 H09 108.2 109.5
C09 C10 H10 109.2 109.5
O09 C09 C08 110.6 109.5
O09 C09 H09 109.6 109.4
O09 C19 H192 109.5 109.5
O09 C19 H191 109.5 109.5
O09 C19 H193 109.4 109.5
C09 C08 H08 109.8 109.4
C08 C17 H172 109.5 109.4
C08 C17 H173 109.5 109.5
C08 C17 H171 109.5 109.5
C08 C07 H07 108.8 109.5
C07 C08 H08 109.7 109.5
C07 C06 C05 107.6 109.5
C07 C06 H061 110.0 109.5
C07 C06 H062 109.9 109.5
C07 O07 H071 109.5 114.0
C06 C05 O06 109.1 109.5
C06 C05 C04 111.5 109.5
C06 C05 H05 108.9 109.5
C05 C06 H061 109.9 109.5
C05 C06 H062 110.0 109.5
C15 C16 H163 109.5 109.4
C15 C16 H161 109.5 109.4
C15 C16 H162 109.5 109.4
C15 C04 C05 109.8 109.4
C15 C04 C03 109.4 109.5
C04 C15 H151 109.3 109.5
C04 C15 H152 109.3 109.5
C15 C04 H04 109.4 109.5
C01 O06 C05 109.9 115.7
O06 C05 C04 108.1 109.2
O06 C05 H05 110.4 109.5
O01 C01 O06 118.2 121.0
O01 C01 C02 119.7 121.0
C05 C04 H04 109.6 109.5
C04 C05 H05 108.9 109.6
C01 C02 C03 97.4 108.4
C01 C02 H021 112.4 109.7
C01 C02 H2 112.4 109.7
C04 C03 H031 107.4 109.6
C04 C03 H1 107.4 109.6
C02 C03 H031 107.4 109.6
C02 C03 H1 107.4 109.6
C03 C02 H021 112.4 109.7
C03 C02 H2 112.4 109.7
H161 C16 H163 109.4 109.5
H162 C16 H163 109.5 109.5
H161 C16 H162 109.5 109.5
H151 C15 H152 109.5 109.5
H1 C03 H031 109.4 109.5
H2 C02 H021 109.5 109.6
H061 C06 H062 109.5 109.5
H172 C17 H173 109.4 109.4
H171 C17 H172 109.5 109.5
H171 C17 H173 109.5 109.5
H191 C19 H192 109.4 109.4
H192 C19 H193 109.5 109.5
H191 C19 H193 109.5 109.4
H181 C18 H183 109.5 109.5
H182 C18 H183 109.5 109.5
H181 C18 H182 109.4 109.5
H111 C11 H112 109.4 109.5
H141 C14 H143 109.5 109.5
H142 C14 H143 109.5 109.5
H141 C14 H142 109.5 109.5

Torsion Angles for X3H

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C14 C13 C12 C11 179.9 180.0
C14 C13 C12 H12 359.8 360.0
C12 C13 C14 H13 180.0 180.0
H141 C14 C13 H143 120.0 119.9
H142 C14 C13 H143 240.0 240.0
H141 C14 C13 H142 240.0 239.9
C14 C13 C12 H13 180.0 180.0
C12 C13 C14 H143 180.0 60.0
C12 C13 C14 H141 300.0 180.0
C12 C13 C14 H142 60.0 300.0
C13 C12 C11 C10 126.1 125.0
C13 C12 C11 H111 246.0 245.0
C13 C12 C11 H112 6.2 5.1
C11 C12 C13 H12 180.0 180.0
C12 C11 C10 C18 274.4 294.7
C11 C10 C18 C09 239.4 240.0
C11 C10 C18 H10 119.0 120.0
C18 C10 C11 H111 154.5 174.7
C18 C10 C11 H112 34.4 54.7
O09 C09 C10 C18 294.1 305.3
C18 C10 C09 C08 56.3 65.3
C18 C10 C09 H09 174.2 185.3
C09 C10 C18 H10 239.6 240.0
H181 C18 C10 H183 120.0 120.0
H182 C18 C10 H183 240.0 240.0
H181 C18 C10 H182 240.0 240.0
C13 C12 C11 H12 180.0 180.0
C11 C12 C13 H13 359.9 360.0
C18 C10 C11 C12 274.4 294.7
C12 C11 C10 C09 153.0 174.7
C12 C11 C10 H10 33.5 54.7
C10 C11 C12 H111 240.0 240.0
C10 C11 C12 H112 119.9 120.0
H111 C11 C12 H112 239.9 239.9
C18 C10 C11 C09 121.4 120.0
C18 C10 C11 H10 240.9 240.0
C11 C10 C18 H183 180.0 180.0
C11 C10 C18 H181 300.0 300.0
C11 C10 C18 H182 60.0 60.0
C12 C11 C10 H111 119.9 120.0
C12 C11 C10 H112 240.0 240.0
C10 C11 C12 H12 306.1 305.0
O09 C09 C10 C11 54.2 65.3
C11 C10 C09 C08 176.3 185.3
C11 C10 C09 H09 294.2 305.3
C09 C10 C11 H10 119.5 120.0
H111 C11 C10 H112 120.1 120.0
C18 C10 C09 C11 240.0 240.0
C18 C10 C09 H10 120.5 120.0
C09 C10 C18 H183 300.6 300.0
C09 C10 C18 H181 60.6 60.0
C09 C10 C18 H182 180.5 180.0
C11 C10 C09 H10 240.5 240.0
C09 C10 C11 H111 33.1 54.7
C09 C10 C11 H112 272.9 294.7
O09 C09 C10 C08 237.8 240.0
O09 C09 C10 H09 119.9 119.9
C10 C09 C08 H08 304.2 300.0
C18 C10 C09 O09 294.1 305.3
C11 C10 C09 O09 54.2 65.3
C10 C09 O09 C08 121.7 120.0
C10 C09 O09 H09 241.0 240.0
O09 C09 C10 H10 173.7 185.2
C09 O09 C19 H192 180.0 296.3
C09 O09 C19 H191 300.0 176.2
C09 O09 C19 H193 60.0 56.3
O09 C09 C08 H08 66.3 60.0
H191 C19 O09 H192 120.0 240.0
H192 C19 O09 H193 120.0 240.0
H191 C19 O09 H193 240.0 119.9
O09 C09 C08 C10 122.0 120.0
C10 C09 C08 H09 117.9 120.0
C08 C09 C10 H10 295.8 305.3
O09 C09 C08 H09 239.9 240.0
C09 C08 C17 H172 180.0 60.1
C09 C08 C17 H173 300.0 180.0
C09 C08 C17 H171 60.0 300.0
C09 C08 C07 H07 56.6 60.0
C07 C08 C09 H08 239.2 240.0
H172 C17 C08 H173 240.0 240.1
H171 C17 C08 H172 240.0 240.0
H171 C17 C08 H173 120.0 120.1
C10 C09 C08 C07 183.5 180.0
O09 C09 C08 C07 305.5 300.0
C09 C08 C07 H08 120.8 119.9
C07 C08 C17 H172 60.3 300.0
C07 C08 C17 H173 180.3 60.0
C07 C08 C17 H171 300.3 180.0
C08 C07 C06 C05 182.9 185.0
C08 C07 C06 H061 302.5 305.0
C08 C07 C06 H062 63.1 65.0
C08 C07 O07 H071 180.0 300.1
C06 C07 O07 H071 301.5 60.0
C07 C06 C05 O06 64.5 65.0
C07 C06 C05 C04 183.8 184.7
C07 C06 C05 H05 304.0 304.9
C05 C06 C07 H061 240.3 240.0
C05 C06 C07 H062 119.7 120.0
H061 C06 C07 H062 239.4 240.0
C07 C06 C05 H061 119.7 120.0
C07 C06 C05 H062 240.3 240.0
C15 C04 C05 C06 297.1 302.1
C01 O06 C05 C06 171.6 173.1
O06 C05 C06 C04 240.7 240.3
O06 C05 C06 H05 120.5 120.1
C06 C05 C04 H04 57.3 62.1
C04 C05 C06 H05 239.8 239.8
H061 C06 C05 H062 120.6 120.0
H161 C16 C15 H163 120.0 120.0
H162 C16 C15 H163 240.0 240.0
H161 C16 C15 H162 240.0 240.0
C06 C05 C04 C15 297.1 302.1
C04 C15 C16 H163 180.0 60.0
C04 C15 C16 H161 300.0 180.0
C04 C15 C16 H162 60.0 300.0
O06 C05 C04 C15 57.0 62.0
C05 C04 C15 H04 120.3 120.0
C15 C04 C05 H05 176.9 181.9
C15 C04 C03 H031 11.1 59.8
C15 C04 C03 H1 128.8 180.1
H151 C15 C04 H152 119.9 120.0
C06 C05 O06 C04 121.4 119.9
C06 C05 O06 H05 240.4 239.9
O06 C05 C06 H061 304.8 305.0
O06 C05 C06 H062 184.2 185.0
C15 C04 C05 O06 57.0 62.0
O01 C01 O06 C05 192.3 129.3
O06 C05 C04 H04 177.3 182.1
C04 C05 O06 H05 119.0 119.9
C06 C05 O06 C01 171.6 173.1
C01 O06 C05 C04 50.1 53.2
C01 O06 C05 H05 291.1 293.2
O01 C01 O06 C02 177.4 180.1
O06 C01 C02 C03 298.7 49.4
O06 C01 C02 H021 56.7 289.7
O06 C01 C02 H2 180.7 169.2
O01 C01 C02 C03 121.3 229.3
O01 C01 C02 H021 239.3 109.6
O01 C01 C02 H2 3.4 349.1
C06 C05 C04 O06 240.1 240.0
C06 C05 C04 H05 120.1 120.1
C04 C05 C06 H061 64.1 64.7
C04 C05 C06 H062 303.5 304.7
C15 C04 C05 C03 119.9 119.9
C05 C04 C15 H151 58.3 55.0
C05 C04 C15 H152 298.5 295.0
C15 C04 C05 H04 239.8 240.0
O06 C05 C04 H05 240.1 240.1
C05 C04 C03 H031 131.2 179.7
C05 C04 C03 H1 248.9 300.0
O01 C01 C02 O06 182.6 179.9
C01 C02 C03 H031 281.7 187.5
C01 C02 C03 H1 164.0 67.3
C03 C02 C01 H021 242.0 119.7
C03 C02 C01 H2 118.0 240.2
H2 C02 C01 H021 124.1 239.5
C06 C05 C04 C03 177.2 182.1
C15 C04 C03 C05 239.9 240.1
C03 C04 C15 H151 177.9 174.9
C03 C04 C15 H152 58.1 54.8
C15 C04 C03 H04 120.0 120.1
O06 C05 C04 C03 297.1 302.1
C02 C03 C04 H031 238.8 240.1
C02 C03 C04 H1 121.2 119.9
C04 C03 C02 H021 284.9 67.1
C04 C03 C02 H2 160.8 187.6
H1 C03 C04 H031 117.6 120.2
C15 C04 C03 C02 249.9 300.0
C01 C02 C03 H021 118.0 240.3
C01 C02 C03 H2 242.0 119.8
C04 C03 C02 H031 121.2 119.9
C04 C03 C02 H1 238.8 240.1
H1 C03 C02 H031 242.4 239.8
H2 C02 C03 H021 235.9 120.5
C15 C16 H163 H161 120.0 120.0
C15 C16 H163 H162 240.0 240.1
H161 C16 H163 H162 120.0 120.1
C15 C16 H161 H163 240.0 240.0
C15 C16 H161 H162 120.0 119.9
H162 C16 H161 H163 120.0 120.1
C15 C16 H162 H163 120.0 119.9
C15 C16 H162 H161 240.0 240.1
H161 C16 H162 H163 240.0 239.9
H151 C15 C16 H163 300.1 180.0
H151 C15 C16 H161 60.0 300.0
H151 C15 C16 H162 180.0 60.0
H151 C15 C04 C05 58.3 55.0
H151 C15 C04 C03 177.9 174.9
C04 C15 H151 H152 240.2 239.9
H151 C15 C04 H04 298.0 295.0
H152 C15 C16 H163 60.0 300.0
H152 C15 C16 H161 179.9 60.0
H152 C15 C16 H162 299.9 180.0
H152 C15 C04 C05 298.5 295.0
H152 C15 C04 C03 58.1 54.8
C04 C15 H152 H151 119.8 120.0
H152 C15 C04 H04 178.1 175.0
C15 C04 H04 C05 120.5 120.0
C15 C04 H04 C03 240.0 239.9
H04 C04 C15 H151 298.0 295.0
H04 C04 C15 H152 178.1 175.0
H04 C04 C05 H05 297.2 302.0
H04 C04 C03 H031 251.1 299.8
H04 C04 C03 H1 8.8 60.0
C04 C03 H031 H1 116.3 120.3
C02 C03 H031 H1 243.7 239.8
H031 C03 C02 H021 163.7 307.2
H031 C03 C02 H2 39.7 67.7
C04 C03 H1 H031 243.7 239.8
C02 C03 H1 H031 116.3 120.2
H1 C03 C02 H021 46.1 187.0
H1 C03 C02 H2 282.0 307.5
C01 C02 H021 C03 251.3 118.9
C01 C02 H021 H2 125.7 239.5
H021 C02 C03 H031 163.7 307.2
H021 C02 C03 H1 46.1 187.0
C03 C02 H021 H2 234.3 120.5
C01 C02 H2 C03 108.6 241.0
C01 C02 H2 H021 234.3 120.5
H2 C02 C03 H031 39.7 67.7
H2 C02 C03 H1 282.0 307.5
C03 C02 H2 H021 125.7 239.5
C06 C05 H05 O06 119.7 120.1
C06 C05 H05 C04 238.2 239.8
H05 C05 C06 H061 184.3 184.9
H05 C05 C06 H062 63.7 64.9
O06 C05 H05 C04 118.5 119.7
H05 C05 C04 H04 297.2 302.0
C07 C06 H061 C05 241.7 240.0
C07 C06 H061 H062 120.9 120.0
H061 C06 C05 O06 304.8 305.0
H061 C06 C05 C04 64.1 64.7
H061 C06 C05 H05 184.3 184.9
C05 C06 H061 H062 239.1 240.0
C07 C06 H062 C05 118.3 120.0
C07 C06 H062 H061 239.1 240.0
H062 C06 C05 O06 184.2 185.0
H062 C06 C05 C04 303.5 304.7
H062 C06 C05 H05 63.7 64.9
C05 C06 H062 H061 120.9 120.0
H07 C07 C08 H08 295.8 300.1
H07 C07 C06 C05 302.8 305.0
H07 C07 C06 H061 62.5 65.0
H07 C07 C06 H062 183.1 185.0
H07 C07 O07 H071 60.5 180.0
H08 C08 C17 H172 299.9 180.0
H08 C08 C17 H173 59.9 299.9
H08 C08 C17 H171 179.9 60.0
H08 C08 C07 H07 295.8 300.1
C08 C17 H172 H173 120.0 119.9
C08 C17 H172 H171 240.0 240.0
H171 C17 H172 H173 240.0 240.0
C08 C17 H173 H172 240.0 240.1
C08 C17 H173 H171 120.0 120.1
H171 C17 H173 H172 120.0 120.0
C08 C17 H171 H172 120.0 120.0
C08 C17 H171 H173 240.0 240.0
H172 C17 H171 H173 120.0 120.0
O09 C09 H09 C10 239.6 240.0
C10 C09 H09 C08 241.0 240.0
H09 C09 C10 H10 53.7 65.3
O09 C09 H09 C08 120.7 120.0
H09 C09 C08 H08 186.4 180.0
O09 C19 H192 H191 120.0 239.9
O09 C19 H192 H193 240.0 120.0
H191 C19 H192 H193 120.0 240.1
O09 C19 H191 H192 240.0 120.1
O09 C19 H191 H193 120.0 240.0
H192 C19 H191 H193 240.0 119.9
O09 C19 H193 H192 120.0 239.9
O09 C19 H193 H191 240.0 120.0
H191 C19 H193 H192 240.0 119.9
C18 C10 H10 C11 118.7 120.0
C18 C10 H10 C09 238.5 240.0
H10 C10 C18 H183 61.0 60.0
H10 C10 C18 H181 181.0 180.0
H10 C10 C18 H182 300.9 300.0
C11 C10 H10 C09 119.7 120.0
H10 C10 C11 H111 273.6 294.7
H10 C10 C11 H112 153.4 174.7
H10 C10 C09 C08 295.8 305.3
H10 C10 C09 H09 53.7 65.3
H183 C18 C10 C11 180.0 180.0
H183 C18 C10 C09 300.6 300.0
H183 C18 C10 H10 61.0 60.0
C10 C18 H183 H181 120.0 119.9
C10 C18 H183 H182 240.0 240.0
H181 C18 H183 H182 120.0 120.0
H181 C18 C10 C11 300.0 300.0
H181 C18 C10 C09 60.6 60.0
H181 C18 C10 H10 181.0 180.0
C10 C18 H181 H183 240.0 240.0
C10 C18 H181 H182 120.0 120.0
H182 C18 H181 H183 120.0 120.0
H182 C18 C10 C11 60.0 60.0
H182 C18 C10 C09 180.5 180.0
H182 C18 C10 H10 300.9 300.0
C10 C18 H182 H183 120.0 120.0
C10 C18 H182 H181 240.0 240.0
H181 C18 H182 H183 240.0 240.0
C12 C11 H111 C10 240.4 240.0
C12 C11 H111 H112 120.2 120.1
H111 C11 C12 H12 66.1 65.0
H111 C11 C10 C09 33.1 54.7
H111 C11 C10 H10 273.6 294.7
C10 C11 H111 H112 239.8 240.0
C12 C11 H112 C10 119.6 120.0
C12 C11 H112 H111 239.8 239.9
H112 C11 C12 H12 186.2 185.0
H112 C11 C10 C09 272.9 294.7
H112 C11 C10 H10 153.4 174.7
C10 C11 H112 H111 120.2 120.0
C13 C12 H12 C11 180.0 180.0
H12 C12 C13 H13 179.9 180.0
H12 C12 C11 C10 306.1 305.0
H12 C12 C11 H111 66.1 65.0
H12 C12 C11 H112 186.2 185.0
C14 C13 H13 C12 180.0 180.0
H13 C13 C14 H143 359.9 240.0
H13 C13 C14 H141 120.0 359.9
H13 C13 C14 H142 239.9 120.0
H13 C13 C12 C11 359.9 360.0
H13 C13 C12 H12 179.9 180.0
H143 C14 C13 C12 180.0 60.0
H143 C14 C13 H13 359.9 240.0
C13 C14 H143 H141 120.0 119.9
C13 C14 H143 H142 240.0 240.0
H141 C14 H143 H142 120.0 120.1
H141 C14 C13 C12 300.0 180.0
H141 C14 C13 H13 120.0 359.9
C13 C14 H141 H143 240.0 240.1
C13 C14 H141 H142 120.0 120.0
H142 C14 H141 H143 120.0 120.0
H142 C14 C13 C12 60.0 300.0
H142 C14 C13 H13 239.9 120.0
C13 C14 H142 H143 120.0 120.0
C13 C14 H142 H141 240.0 240.0
H141 C14 H142 H143 240.0 240.0