PDB Chemical Component X39

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for X39

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
N1	C2	1.468	1.468
N1	C10	1.459	1.469
N1	C22	1.434	1.383
C2	C3	1.520	1.531
C3	C4	1.539	1.532
C4	N5	1.505	1.468
C4	C9	1.531	1.531
C4	C11	1.542	1.506
C9	C10	1.508	1.531
C11	O12	1.197	1.212
C11	N13	1.332	1.348
N13	C14	1.452	1.465
C14	C15	1.500	1.507
C15	C16	1.394	1.383
C15	C21	1.397	1.382
C16	C17	1.381	1.382
C17	C18	1.383	1.384
C18	CL1	1.730	1.736
C18	C20	1.381	1.383
C20	C21	1.378	1.382
C22	N23	1.348	1.330
C22	C31	1.422	1.403
N23	C24	1.333	1.321
C24	N25	1.336	1.315
N25	C26	1.329	1.332
C26	N27	1.354	1.367
C26	C31	1.385	1.407
N27	C29	1.340	1.371
C29	C30	1.348	1.343
C30	C31	1.357	1.462
C2	H21C	1.100	1.090
C2	H22C	1.100	1.089
C10	H101	1.100	1.090
C10	H102	1.101	1.089
C3	H31C	1.100	1.090
C3	H32C	1.100	1.090
N5	H51N	1.000	1.008
N5	H52N	1.000	1.009
C9	H91C	1.100	1.090
C9	H92C	1.100	1.090
N13	H13	1.000	0.971
C14	H141	1.100	1.091
C14	H142	1.100	1.090
C16	H16	1.080	1.079
C21	H21	1.080	1.080
C17	H17	1.080	1.081
C20	H20	1.080	1.080
C24	H24	1.079	1.081
N27	H27	1.000	0.970
C29	H29	1.080	1.080
C30	H30	1.080	1.081

Bond Angles for X39

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	N1	C10	112.2	111.2
C2	N1	C22	122.4	111.0
N1	C2	C3	110.3	109.5
N1	C2	H21C	109.2	109.5
N1	C2	H22C	109.0	109.5
C10	N1	C22	119.6	111.0
N1	C10	C9	109.8	109.5
N1	C10	H101	109.3	109.4
N1	C10	H102	109.3	109.5
N1	C22	N23	115.5	120.8
N1	C22	C31	124.3	120.9
C2	C3	C4	112.0	109.3
C3	C2	H21C	109.2	109.4
C3	C2	H22C	109.0	109.5
C2	C3	H31C	108.6	109.5
C2	C3	H32C	108.1	109.5
C3	C4	N5	108.6	109.5
C3	C4	C9	110.6	109.1
C3	C4	C11	112.8	109.5
C4	C3	H31C	108.6	109.5
C4	C3	H32C	108.1	109.5
N5	C4	C9	107.9	109.5
N5	C4	C11	107.2	109.6
C4	N5	H51N	109.5	111.0
C4	N5	H52N	109.5	111.1
C9	C4	C11	109.6	109.6
C4	C9	C10	111.4	109.3
C4	C9	H91C	108.9	109.5
C4	C9	H92C	108.4	109.5
C4	C11	O12	120.8	120.1
C4	C11	N13	118.0	120.0
C9	C10	H101	109.4	109.5
C9	C10	H102	109.3	109.5
C10	C9	H91C	108.8	109.5
C10	C9	H92C	108.4	109.5
O12	C11	N13	121.2	119.9
C11	N13	C14	121.0	120.0
C11	N13	H13	119.5	120.0
N13	C14	C15	111.4	109.5
C14	N13	H13	119.5	120.0
N13	C14	H141	108.8	109.4
N13	C14	H142	108.3	109.5
C14	C15	C16	120.6	120.0
C14	C15	C21	120.3	120.0
C15	C14	H141	108.8	109.4
C15	C14	H142	108.4	109.5
C16	C15	C21	119.1	120.0
C15	C16	C17	120.3	120.0
C15	C16	H16	119.8	120.0
C15	C21	C20	120.5	120.0
C15	C21	H21	119.8	120.0
C16	C17	C18	119.7	120.0
C17	C16	H16	119.8	120.0
C16	C17	H17	120.2	120.0
C17	C18	CL1	119.8	120.0
C17	C18	C20	120.7	120.0
C18	C17	H17	120.1	120.0
CL1	C18	C20	119.5	120.0
C18	C20	C21	119.7	120.0
C18	C20	H20	120.1	120.1
C20	C21	H21	119.8	120.0
C21	C20	H20	120.1	120.0
N23	C22	C31	120.2	118.3
C22	N23	C24	117.1	121.0
C22	C31	C26	115.5	118.7
C22	C31	C30	137.9	135.1
N23	C24	N25	127.9	122.8
N23	C24	H24	116.1	118.6
C24	N25	C26	113.9	120.7
N25	C24	H24	116.0	118.6
N25	C26	N27	127.6	134.3
N25	C26	C31	125.3	118.5
N27	C26	C31	107.1	107.2
C26	N27	C29	109.4	110.0
C26	N27	H27	125.3	125.0
C26	C31	C30	106.5	106.2
N27	C29	C30	107.6	109.8
C29	N27	H27	125.3	125.0
N27	C29	H29	126.2	125.1
C29	C30	C31	109.3	106.8
C30	C29	H29	126.2	125.1
C29	C30	H30	125.3	126.6
C31	C30	H30	125.3	126.6
H21C	C2	H22C	110.2	109.4
H101	C10	H102	109.7	109.5
H31C	C3	H32C	111.4	109.5
H51N	N5	H52N	109.5	111.0
H91C	C9	H92C	110.9	109.5
H141	C14	H142	111.1	109.5

Torsion Angles for X39

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C10	N1	C2	C22	153.0	124.1
C2	N1	C10	C9	297.8	61.7
C2	N1	C10	H101	57.8	181.7
C2	N1	C10	H102	177.9	301.7
C2	N1	C22	N23	157.3	360.0
C2	N1	C22	C31	336.3	179.7
N1	C2	C3	C4	306.8	59.2
C3	C2	N1	H21C	240.0	240.0
C3	C2	N1	H22C	119.6	120.1
N1	C2	C3	H31C	66.8	179.1
N1	C2	C3	H32C	187.9	299.2
H21C	C2	N1	H22C	239.6	240.1
C2	N1	C10	C22	206.1	235.9
C10	N1	C2	C3	60.0	298.3
C10	N1	C2	H21C	179.9	58.3
C10	N1	C2	H22C	300.3	178.2
C10	N1	C22	N23	6.2	235.8
C10	N1	C22	C31	185.2	55.5
C4	C9	C10	N1	57.5	300.8
C9	C10	N1	H101	240.0	240.0
C9	C10	N1	H102	119.9	120.0
N1	C10	C9	H91C	297.5	180.8
N1	C10	C9	H92C	176.7	60.8
H101	C10	N1	H102	239.9	240.0
C2	N1	C22	C10	151.1	124.2
C22	N1	C2	C3	267.0	174.2
C22	N1	C2	H21C	27.0	294.2
C22	N1	C2	H22C	147.4	54.1
C22	N1	C10	C9	91.7	185.8
C22	N1	C10	H101	211.7	305.8
C22	N1	C10	H102	331.8	65.8
N23	C22	N1	C31	181.0	180.2
N1	C22	N23	C24	179.9	180.0
N1	C22	C31	C26	180.7	179.7
N1	C22	C31	C30	0.3	0.6
C3	C2	N1	C10	60.0	298.3
C3	C2	N1	C22	267.0	174.2
N1	C2	C3	H21C	120.0	120.0
N1	C2	C3	H22C	240.4	239.9
C2	C3	C4	N5	167.8	62.2
C2	C3	C4	C9	49.6	302.3
C2	C3	C4	C11	286.4	182.4
C4	C3	C2	H31C	240.0	240.1
C4	C3	C2	H32C	119.0	120.0
H21C	C2	C3	H22C	120.4	119.9
H31C	C3	C2	H32C	238.9	239.9
C4	C3	C2	H21C	186.8	299.2
C4	C3	C2	H22C	66.5	179.2
C2	C3	C4	H31C	120.0	119.9
C2	C3	C4	H32C	241.1	240.0
N5	C4	C3	C9	118.2	119.9
N5	C4	C3	C11	241.3	239.8
C3	C4	N5	H51N	127.1	180.0
C3	C4	N5	H52N	247.1	304.0
C9	C4	C3	C11	123.1	120.0
C3	C4	C9	C10	308.4	57.7
C3	C4	C9	H91C	68.4	177.6
C3	C4	C9	H92C	189.2	297.7
C3	C4	C11	O12	138.1	25.0
C3	C4	C11	N13	317.5	205.0
H31C	C3	C4	H32C	121.1	120.1
C3	C4	N5	C9	240.1	240.4
C3	C4	N5	C11	122.1	120.1
N5	C4	C3	H31C	47.8	302.3
N5	C4	C3	H32C	286.7	182.2
C9	C4	N5	C11	242.1	239.8
N5	C4	C9	C10	189.7	297.8
N5	C4	C9	H91C	309.7	57.8
N5	C4	C9	H92C	70.5	177.8
N5	C4	C11	O12	257.6	145.1
N5	C4	C11	N13	77.0	325.1
H51N	N5	C4	H52N	240.0	236.0
N1	C10	C9	C4	57.5	300.8
C3	C4	C9	N5	118.7	119.9
C3	C4	C9	C11	235.0	240.1
C9	C4	C3	H31C	289.6	182.4
C9	C4	C3	H32C	168.5	62.3
N5	C4	C9	C11	116.4	120.2
C9	C4	N5	H51N	247.0	299.6
C9	C4	N5	H52N	7.0	63.6
C9	C4	C11	O12	14.4	265.3
C9	C4	C11	N13	193.8	85.3
C4	C9	C10	H101	297.5	180.9
C4	C9	C10	H102	177.4	60.8
C10	C9	C4	H91C	240.0	240.0
C10	C9	C4	H92C	119.2	120.0
H91C	C9	C4	H92C	239.2	239.9
C3	C4	C11	N5	240.5	239.9
C3	C4	C11	C9	123.7	119.7
C11	C4	C3	H31C	166.4	62.4
C11	C4	C3	H32C	45.4	302.3
N5	C4	C11	C9	243.2	239.8
C11	C4	N5	H51N	5.0	59.9
C11	C4	N5	H52N	125.0	183.9
C11	C4	C9	C10	73.4	177.6
C11	C4	C9	H91C	193.4	297.5
C11	C4	C9	H92C	314.1	57.6
O12	C11	C4	N13	180.6	180.0
C4	C11	N13	C14	176.4	180.1
C4	C11	N13	H13	356.4	359.9
C9	C10	N1	C22	91.7	185.8
N1	C10	C9	H101	120.0	119.9
N1	C10	C9	H102	240.1	240.0
C10	C9	C4	C11	73.4	177.6
C4	C9	C10	H91C	120.0	120.0
C4	C9	C10	H92C	240.8	240.0
H101	C10	C9	H102	120.2	120.1
H91C	C9	C10	H92C	120.8	120.1
C4	C11	O12	N13	179.4	180.0
O12	C11	N13	C14	355.8	0.1
O12	C11	N13	H13	175.8	180.0
C4	C11	N13	O12	180.6	180.0
C11	N13	C14	C15	251.8	180.0
C14	N13	C11	H13	180.0	180.1
C11	N13	C14	H141	11.7	299.9
C11	N13	C14	H142	132.6	59.9
C11	N13	C14	H13	180.0	179.9
N13	C14	C15	C16	96.9	89.9
N13	C14	C15	C21	277.4	269.7
C15	C14	N13	H141	240.0	240.1
C15	C14	N13	H142	119.2	120.1
H141	C14	N13	H142	239.1	240.0
C15	C14	N13	H13	71.8	0.1
N13	C14	C15	H141	120.0	119.9
N13	C14	C15	H142	240.9	239.9
C16	C15	C14	C21	179.5	180.3
C14	C15	C16	C17	180.4	180.0
C14	C15	C16	H16	0.4	360.0
C14	C15	C21	C20	179.8	179.8
C14	C15	C21	H21	359.7	0.0
H141	C14	C15	H142	120.9	120.0
C14	C15	C16	C21	180.5	179.7
C16	C15	C14	H141	336.9	330.0
C16	C15	C14	H142	216.0	210.0
C16	C15	C21	C20	0.2	359.5
C16	C15	C21	H21	180.2	179.8
C15	C16	C17	C18	0.0	0.0
C17	C16	C15	H16	180.0	180.0
C15	C16	C17	H17	180.0	180.0
C14	C15	C21	C16	179.5	180.3
C21	C15	C14	H141	157.4	149.8
C21	C15	C14	H142	36.5	29.8
C21	C15	C16	C17	359.9	0.2
C21	C15	C16	H16	179.9	180.2
C18	C20	C21	C15	359.7	0.5
C20	C21	C15	H21	180.0	179.7
C15	C21	C20	H20	179.7	180.2
C17	C16	C15	C21	359.9	0.2
C15	C16	C17	H16	180.0	180.0
C16	C17	C18	CL1	180.1	180.0
C16	C17	C18	C20	359.9	360.0
C18	C17	C16	H17	180.0	180.0
C18	C17	C16	H16	180.0	180.0
C16	C17	C18	H17	180.0	180.0
CL1	C18	C17	C20	180.2	180.1
C17	C18	C20	C21	0.2	359.8
C17	C18	C20	H20	180.2	180.0
C17	C18	CL1	C20	179.8	179.9
CL1	C18	C17	H17	0.1	0.1
CL1	C18	C20	C21	180.0	179.7
CL1	C18	C20	H20	0.0	360.0
C15	C21	C20	C18	359.7	0.5
C17	C18	C20	CL1	180.2	180.1
C20	C18	C17	H17	179.9	180.0
C18	C20	C21	H21	179.7	180.2
C21	C20	C18	H20	180.0	179.8
C15	C21	C20	H21	180.0	180.3
C18	C20	C21	H20	180.0	180.2
N1	C22	N23	C31	179.0	179.8
N23	C22	C31	C26	359.6	359.5
N23	C22	C31	C30	179.3	180.4
C22	N23	C24	N25	359.4	0.1
C22	N23	C24	H24	179.4	180.1
N1	C22	C31	N23	181.0	180.2
C31	C22	N23	C24	0.8	0.2
N25	C26	C31	C22	359.7	0.5
N27	C26	C31	C22	180.0	180.3
C26	C31	C22	C30	180.3	179.1
C29	C30	C31	C22	180.1	179.5
C22	C31	C30	H30	0.1	359.4
C24	N23	C22	C31	0.8	0.2
N23	C24	N25	C26	360.0	360.0
N25	C24	N23	H24	180.0	180.0
N23	C24	N25	H24	180.0	180.0
C24	N25	C26	N27	180.2	180.0
C24	N25	C26	C31	0.5	359.8
C22	C31	C26	N25	359.7	0.5
C26	N25	C24	H24	180.0	180.0
N27	C26	N25	C31	179.7	180.2
N25	C26	N27	C29	180.2	180.0
N25	C26	N27	H27	0.2	360.0
N25	C26	C31	C30	179.9	179.8
C22	C31	C26	N27	180.0	180.3
N25	C26	N27	C31	180.3	179.8
N27	C26	C31	C30	0.2	359.7
C26	N27	C29	C30	360.0	360.0
C29	N27	C26	H27	180.0	180.0
C26	N27	C29	H29	180.0	180.0
C22	C31	C26	C30	179.8	180.7
N25	C26	C31	N27	179.7	180.2
C31	C26	N27	C29	359.9	0.2
C31	C26	N27	H27	179.9	180.2
C29	C30	C31	C26	359.8	0.3
C26	C31	C30	H30	179.8	180.2
C29	N27	C26	C31	359.9	0.2
C26	N27	C29	H27	180.0	180.0
N27	C29	C30	C31	0.1	359.8
C30	C29	N27	H29	180.0	180.0
N27	C29	C30	H30	180.1	180.0
C22	C31	C30	C29	180.1	179.5
C26	C31	C30	C29	359.8	0.3
C30	C29	N27	H27	180.0	180.0
N27	C29	C30	H29	180.0	180.0
C31	C30	C29	H30	180.0	179.9
C22	C31	C30	C26	180.3	179.2
C31	C30	C29	H29	180.1	179.8
C29	C30	C31	H30	180.0	180.1
H21C	C2	N1	C10	179.9	58.3
H21C	C2	N1	C22	27.0	294.2
N1	C2	H21C	C3	239.3	240.0
N1	C2	H21C	H22C	119.7	120.0
H21C	C2	C3	C4	186.8	299.2
C3	C2	H21C	H22C	240.4	240.0
H21C	C2	C3	H31C	306.8	59.1
H21C	C2	C3	H32C	67.9	179.2
H22C	C2	N1	C10	300.3	178.2
H22C	C2	N1	C22	147.4	54.1
N1	C2	H22C	C3	120.4	120.1
N1	C2	H22C	H21C	240.2	240.0
H22C	C2	C3	C4	66.5	179.2
C3	C2	H22C	H21C	119.8	119.9
H22C	C2	C3	H31C	186.5	299.2
H22C	C2	C3	H32C	307.5	59.3
H101	C10	N1	C22	211.7	305.8
N1	C10	H101	C9	239.7	240.0
N1	C10	H101	H102	119.8	120.0
C9	C10	H101	H102	240.1	240.0
H101	C10	C9	H91C	177.5	60.9
H101	C10	C9	H92C	56.7	300.8
H102	C10	N1	C22	331.8	65.8
N1	C10	H102	C9	120.2	120.0
N1	C10	H102	H101	240.1	240.0
C9	C10	H102	H101	119.9	120.0
H102	C10	C9	H91C	57.3	300.8
H102	C10	C9	H92C	296.6	180.8
C2	C3	H31C	C4	237.9	240.2
H31C	C3	C2	H21C	306.8	59.1
H31C	C3	C2	H22C	186.5	299.2
C2	C3	H31C	H32C	119.0	120.1
H31C	C3	C4	N5	47.8	302.3
H31C	C3	C4	C9	289.6	182.4
H31C	C3	C4	C11	166.4	62.4
C4	C3	H31C	H32C	241.0	239.9
C2	C3	H32C	C4	121.4	119.8
H32C	C3	C2	H21C	67.9	179.2
H32C	C3	C2	H22C	307.5	59.3
C2	C3	H32C	H31C	240.7	239.9
H32C	C3	C4	N5	286.7	182.2
H32C	C3	C4	C9	168.5	62.3
H32C	C3	C4	C11	45.4	302.3
C4	C3	H32C	H31C	119.3	120.1
H51N	N5	C4	C9	247.0	299.6
H51N	N5	C4	C11	5.0	59.9
C4	N5	H51N	H52N	120.0	124.0
H52N	N5	C4	C9	7.0	63.6
H52N	N5	C4	C11	125.0	183.9
C4	N5	H52N	H51N	240.0	236.0
H91C	C9	C4	C11	193.4	297.5
C4	C9	H91C	C10	238.4	240.2
C4	C9	H91C	H92C	119.2	120.1
H91C	C9	C10	H101	177.5	60.9
H91C	C9	C10	H102	57.3	300.8
C10	C9	H91C	H92C	240.8	239.9
H92C	C9	C4	C11	314.1	57.6
C4	C9	H92C	C10	121.0	119.8
C4	C9	H92C	H91C	240.5	239.9
H92C	C9	C10	H101	56.7	300.8
H92C	C9	C10	H102	296.6	180.8
C10	C9	H92C	H91C	119.5	120.1
C11	N13	H13	C14	180.0	180.1
H13	N13	C14	C15	71.8	0.1
H13	N13	C14	H141	191.7	120.0
H13	N13	C14	H142	312.6	240.0
N13	C14	H141	C15	238.4	240.0
H141	C14	N13	H13	191.7	120.0
N13	C14	H141	H142	119.2	120.0
H141	C14	C15	C16	336.9	330.0
H141	C14	C15	C21	157.4	149.8
C15	C14	H141	H142	240.8	240.0
N13	C14	H142	C15	121.1	120.1
H142	C14	N13	H13	312.6	240.0
N13	C14	H142	H141	240.5	240.0
H142	C14	C15	C16	216.0	210.0
H142	C14	C15	C21	36.5	29.8
C15	C14	H142	H141	119.4	120.0
H16	C16	C15	C21	179.9	180.2
C15	C16	H16	C17	180.0	180.0
H16	C16	C17	C18	180.0	180.0
H16	C16	C17	H17	0.0	360.0
C15	C21	H21	C20	180.0	179.7
H21	C21	C20	H20	359.7	360.0
C16	C17	H17	C18	180.0	180.0
H17	C17	C16	H16	0.0	360.0
H17	C17	C18	CL1	0.1	0.1
H17	C17	C18	C20	179.9	180.0
C18	C20	H20	C21	180.0	179.8
H20	C20	C21	H21	359.7	360.0
N23	C24	H24	N25	180.0	180.0
H24	C24	N25	C26	180.0	180.0
H27	N27	C26	C31	179.9	180.2
C26	N27	H27	C29	180.0	180.1
H27	N27	C29	C30	180.0	180.0
H27	N27	C29	H29	0.0	0.1
N27	C29	H29	C30	180.0	180.0
H29	C29	N27	H27	0.0	0.1
H29	C29	C30	C31	180.1	179.8
H29	C29	C30	H30	0.1	359.9
C29	C30	H30	C31	180.0	179.8
H30	C30	C29	H29	0.1	359.9