PDB Chemical Component X35
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for X35
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N1 |
C2 |
1.354 |
1.312 |
| N1 |
C14 |
1.338 |
1.302 |
| C2 |
N3 |
1.341 |
1.385 |
| C2 |
C4 |
1.401 |
1.384 |
| C4 |
C5 |
1.396 |
1.407 |
| C4 |
S13 |
1.733 |
1.762 |
| C5 |
C6 |
1.505 |
1.480 |
| C5 |
O12 |
1.350 |
1.219 |
| C6 |
C7 |
1.422 |
1.395 |
| C6 |
C11 |
1.431 |
1.400 |
| C7 |
N8 |
1.389 |
1.317 |
| N8 |
C9 |
1.389 |
1.319 |
| C9 |
C10 |
1.410 |
1.384 |
| C10 |
C11 |
1.427 |
1.383 |
| S13 |
C14 |
1.720 |
1.708 |
| C14 |
N15 |
1.355 |
1.376 |
| N15 |
C16 |
1.459 |
1.465 |
| C16 |
C17 |
1.500 |
1.508 |
| C17 |
C18 |
1.462 |
1.310 |
| N3 |
HN3 |
1.001 |
0.970 |
| N3 |
HN3A |
1.000 |
0.969 |
| C7 |
H7 |
1.080 |
1.080 |
| C9 |
H9 |
1.080 |
1.080 |
| C10 |
H10 |
1.080 |
1.080 |
| C11 |
H11 |
1.079 |
1.080 |
| N15 |
HN15 |
1.000 |
0.970 |
| C16 |
H16 |
1.100 |
1.090 |
| C16 |
H16A |
1.100 |
1.089 |
| C17 |
H17 |
1.080 |
1.081 |
| C18 |
H18 |
1.080 |
1.080 |
| C18 |
H18A |
1.080 |
1.080 |
Bond Angles for X35
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C14 |
111.4 |
117.3 |
| N1 |
C2 |
N3 |
120.4 |
123.3 |
| N1 |
C2 |
C4 |
114.5 |
113.6 |
| N1 |
C14 |
S13 |
114.9 |
110.9 |
| N1 |
C14 |
N15 |
120.8 |
124.6 |
| N3 |
C2 |
C4 |
125.2 |
123.1 |
| C2 |
N3 |
HN3 |
109.5 |
120.0 |
| C2 |
N3 |
HN3A |
109.4 |
120.0 |
| C2 |
C4 |
C5 |
125.6 |
126.2 |
| C2 |
C4 |
S13 |
110.0 |
107.6 |
| C5 |
C4 |
S13 |
124.4 |
126.2 |
| C4 |
C5 |
C6 |
124.9 |
120.0 |
| C4 |
C5 |
O12 |
120.0 |
120.0 |
| C4 |
S13 |
C14 |
89.1 |
90.6 |
| C6 |
C5 |
O12 |
115.2 |
120.0 |
| C5 |
C6 |
C7 |
121.7 |
120.5 |
| C5 |
C6 |
C11 |
120.2 |
120.6 |
| C7 |
C6 |
C11 |
118.1 |
118.8 |
| C6 |
C7 |
N8 |
119.5 |
120.6 |
| C6 |
C7 |
H7 |
120.2 |
119.7 |
| C6 |
C11 |
C10 |
121.4 |
118.3 |
| C6 |
C11 |
H11 |
119.3 |
120.8 |
| C7 |
N8 |
C9 |
122.7 |
121.9 |
| N8 |
C7 |
H7 |
120.2 |
119.7 |
| N8 |
C9 |
C10 |
119.9 |
121.1 |
| N8 |
C9 |
H9 |
120.1 |
119.5 |
| C9 |
C10 |
C11 |
118.4 |
119.3 |
| C10 |
C9 |
H9 |
120.0 |
119.5 |
| C9 |
C10 |
H10 |
120.8 |
120.3 |
| C11 |
C10 |
H10 |
120.8 |
120.4 |
| C10 |
C11 |
H11 |
119.3 |
120.9 |
| S13 |
C14 |
N15 |
124.3 |
124.6 |
| C14 |
N15 |
C16 |
120.4 |
120.0 |
| C14 |
N15 |
HN15 |
106.0 |
120.0 |
| N15 |
C16 |
C17 |
110.6 |
109.5 |
| C16 |
N15 |
HN15 |
106.0 |
120.0 |
| N15 |
C16 |
H16 |
109.1 |
109.5 |
| N15 |
C16 |
H16A |
109.1 |
109.5 |
| C16 |
C17 |
C18 |
121.9 |
120.0 |
| C17 |
C16 |
H16 |
109.1 |
109.4 |
| C17 |
C16 |
H16A |
109.1 |
109.5 |
| C16 |
C17 |
H17 |
119.0 |
120.0 |
| C18 |
C17 |
H17 |
119.0 |
120.0 |
| C17 |
C18 |
H18 |
120.0 |
120.0 |
| C17 |
C18 |
H18A |
120.0 |
120.0 |
| HN3 |
N3 |
HN3A |
109.5 |
120.0 |
| H16 |
C16 |
H16A |
109.9 |
109.5 |
| H18 |
C18 |
H18A |
120.0 |
120.0 |
Torsion Angles for X35
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C14 |
S13 |
0.1 |
360.0 |
| C2 |
N1 |
C14 |
N15 |
180.2 |
180.0 |
| N3 |
C2 |
N1 |
C4 |
179.4 |
179.9 |
| N1 |
C2 |
N3 |
HN3 |
0.0 |
360.0 |
| N1 |
C2 |
N3 |
HN3A |
120.0 |
180.0 |
| N1 |
C2 |
C4 |
C5 |
179.0 |
180.0 |
| N1 |
C2 |
C4 |
S13 |
359.3 |
359.9 |
| C14 |
N1 |
C2 |
N3 |
179.8 |
180.0 |
| C14 |
N1 |
C2 |
C4 |
0.4 |
0.1 |
| C4 |
S13 |
C14 |
N1 |
359.6 |
360.0 |
| S13 |
C14 |
N1 |
N15 |
179.9 |
180.0 |
| N1 |
C14 |
N15 |
C16 |
178.3 |
360.0 |
| N1 |
C14 |
N15 |
HN15 |
298.3 |
180.0 |
| N3 |
C2 |
N1 |
C14 |
179.8 |
180.0 |
| N1 |
C2 |
N3 |
C4 |
180.6 |
180.1 |
| N3 |
C2 |
C4 |
C5 |
359.6 |
0.1 |
| N3 |
C2 |
C4 |
S13 |
179.9 |
180.0 |
| HN3 |
N3 |
C2 |
HN3A |
240.0 |
180.0 |
| C4 |
C2 |
N1 |
C14 |
0.4 |
0.1 |
| N1 |
C2 |
C4 |
N3 |
179.4 |
179.9 |
| C4 |
C2 |
N3 |
HN3 |
179.4 |
179.9 |
| C4 |
C2 |
N3 |
HN3A |
299.4 |
359.9 |
| C5 |
C4 |
C2 |
S13 |
179.7 |
180.1 |
| C2 |
C4 |
C5 |
C6 |
181.5 |
173.3 |
| C2 |
C4 |
C5 |
O12 |
0.7 |
353.3 |
| C2 |
C4 |
S13 |
C14 |
0.6 |
0.1 |
| C2 |
C4 |
C5 |
S13 |
180.4 |
179.9 |
| C5 |
C4 |
S13 |
C14 |
180.9 |
180.0 |
| C6 |
C5 |
C4 |
O12 |
180.8 |
180.0 |
| C4 |
C5 |
C6 |
C7 |
226.8 |
154.2 |
| C4 |
C5 |
C6 |
C11 |
47.5 |
333.9 |
| N1 |
C14 |
S13 |
C4 |
359.6 |
360.0 |
| C2 |
C4 |
S13 |
C5 |
179.7 |
180.1 |
| S13 |
C4 |
C5 |
C6 |
1.1 |
353.4 |
| S13 |
C4 |
C5 |
O12 |
180.3 |
173.4 |
| C4 |
S13 |
C14 |
N15 |
179.5 |
180.0 |
| C6 |
C5 |
C4 |
S13 |
1.1 |
353.4 |
| C4 |
C5 |
C6 |
O12 |
179.2 |
180.0 |
| C7 |
C6 |
C5 |
C11 |
179.3 |
180.3 |
| C5 |
C6 |
C7 |
N8 |
180.4 |
180.0 |
| C5 |
C6 |
C7 |
H7 |
0.4 |
359.9 |
| C5 |
C6 |
C11 |
C10 |
179.8 |
179.7 |
| C5 |
C6 |
C11 |
H11 |
359.8 |
0.1 |
| O12 |
C5 |
C4 |
S13 |
180.3 |
173.4 |
| C4 |
C5 |
O12 |
C6 |
180.7 |
180.0 |
| O12 |
C5 |
C6 |
C7 |
47.6 |
334.2 |
| O12 |
C5 |
C6 |
C11 |
228.3 |
153.9 |
| C7 |
C6 |
C5 |
O12 |
47.6 |
334.2 |
| C5 |
C6 |
C7 |
C11 |
180.7 |
179.7 |
| C7 |
C6 |
C11 |
C10 |
0.4 |
359.4 |
| C7 |
C6 |
C11 |
H11 |
180.4 |
179.7 |
| C6 |
C7 |
N8 |
C9 |
359.9 |
360.0 |
| N8 |
C7 |
C6 |
H7 |
180.0 |
180.1 |
| C11 |
C6 |
C5 |
O12 |
228.3 |
153.9 |
| C5 |
C6 |
C11 |
C7 |
179.3 |
180.3 |
| C11 |
C6 |
C7 |
N8 |
359.7 |
0.3 |
| C11 |
C6 |
C7 |
H7 |
179.7 |
180.3 |
| C9 |
C10 |
C11 |
C6 |
359.8 |
0.6 |
| C6 |
C11 |
C10 |
H10 |
179.8 |
180.3 |
| C10 |
C11 |
C6 |
H11 |
180.0 |
179.6 |
| N8 |
C7 |
C6 |
C11 |
359.7 |
0.3 |
| C6 |
C7 |
N8 |
H7 |
180.0 |
179.9 |
| C7 |
N8 |
C9 |
C10 |
0.3 |
0.1 |
| C7 |
N8 |
C9 |
H9 |
180.3 |
180.0 |
| C9 |
N8 |
C7 |
H7 |
179.9 |
180.0 |
| N8 |
C9 |
C10 |
C11 |
359.8 |
359.6 |
| C10 |
C9 |
N8 |
H9 |
180.0 |
180.1 |
| N8 |
C9 |
C10 |
H10 |
179.8 |
179.9 |
| C6 |
C11 |
C10 |
C9 |
359.8 |
0.6 |
| N8 |
C9 |
C10 |
H9 |
180.0 |
179.9 |
| C11 |
C10 |
C9 |
H10 |
180.0 |
179.7 |
| C9 |
C10 |
C11 |
H11 |
179.8 |
180.3 |
| C6 |
C11 |
C10 |
H11 |
180.0 |
180.4 |
| C11 |
C10 |
C9 |
H9 |
179.8 |
179.7 |
| C9 |
C10 |
C11 |
H10 |
180.0 |
180.3 |
| N1 |
C14 |
S13 |
N15 |
180.1 |
180.0 |
| S13 |
C14 |
N15 |
C16 |
358.4 |
180.0 |
| S13 |
C14 |
N15 |
HN15 |
118.4 |
0.1 |
| N1 |
C14 |
N15 |
S13 |
179.9 |
180.0 |
| C14 |
N15 |
C16 |
C17 |
247.6 |
180.0 |
| C16 |
N15 |
C14 |
HN15 |
240.0 |
180.0 |
| C14 |
N15 |
C16 |
H16 |
7.6 |
300.0 |
| C14 |
N15 |
C16 |
H16A |
127.6 |
60.0 |
| C14 |
N15 |
C16 |
HN15 |
120.0 |
180.0 |
| N15 |
C16 |
C17 |
C18 |
86.9 |
124.9 |
| C17 |
C16 |
N15 |
H16 |
240.0 |
240.1 |
| C17 |
C16 |
N15 |
H16A |
120.0 |
120.0 |
| N15 |
C16 |
C17 |
H17 |
266.9 |
305.0 |
| H16 |
C16 |
N15 |
H16A |
240.0 |
240.0 |
| C17 |
C16 |
N15 |
HN15 |
127.6 |
0.0 |
| N15 |
C16 |
C17 |
H16 |
120.0 |
120.0 |
| N15 |
C16 |
C17 |
H16A |
240.0 |
239.9 |
| C18 |
C17 |
C16 |
H17 |
180.0 |
180.0 |
| C16 |
C17 |
C18 |
H18 |
180.0 |
180.0 |
| C16 |
C17 |
C18 |
H18A |
0.0 |
0.1 |
| H16 |
C16 |
C17 |
H16A |
120.0 |
120.0 |
| C18 |
C17 |
C16 |
H16 |
326.9 |
5.0 |
| C18 |
C17 |
C16 |
H16A |
206.9 |
245.0 |
| C16 |
C17 |
C18 |
H17 |
180.0 |
180.0 |
| H18 |
C18 |
C17 |
H18A |
180.0 |
179.9 |
| HN3 |
N3 |
C2 |
C4 |
179.4 |
179.9 |
| C2 |
N3 |
HN3 |
HN3A |
120.0 |
180.0 |
| HN3A |
N3 |
C2 |
C4 |
299.4 |
359.9 |
| C2 |
N3 |
HN3A |
HN3 |
240.0 |
180.0 |
| H7 |
C7 |
C6 |
C11 |
179.7 |
180.3 |
| C6 |
C7 |
H7 |
N8 |
180.0 |
180.1 |
| H7 |
C7 |
N8 |
C9 |
179.9 |
180.0 |
| N8 |
C9 |
H9 |
C10 |
180.0 |
180.1 |
| H9 |
C9 |
C10 |
C11 |
179.8 |
179.7 |
| H9 |
C9 |
C10 |
H10 |
359.8 |
0.0 |
| C9 |
C10 |
H10 |
C11 |
180.0 |
179.7 |
| H10 |
C10 |
C9 |
H9 |
359.8 |
0.0 |
| H10 |
C10 |
C11 |
H11 |
359.8 |
360.0 |
| C6 |
C11 |
H11 |
C10 |
180.0 |
179.6 |
| H11 |
C11 |
C10 |
H10 |
359.8 |
360.0 |
| C14 |
N15 |
HN15 |
C16 |
230.9 |
180.0 |
| HN15 |
N15 |
C16 |
C17 |
127.6 |
0.0 |
| HN15 |
N15 |
C16 |
H16 |
247.5 |
120.0 |
| HN15 |
N15 |
C16 |
H16A |
7.5 |
240.0 |
| N15 |
C16 |
H16 |
C17 |
239.1 |
240.0 |
| H16 |
C16 |
N15 |
HN15 |
247.5 |
120.0 |
| N15 |
C16 |
H16 |
H16A |
119.5 |
120.1 |
| H16 |
C16 |
C17 |
C18 |
326.9 |
5.0 |
| C17 |
C16 |
H16 |
H16A |
240.4 |
240.0 |
| H16 |
C16 |
C17 |
H17 |
146.9 |
185.0 |
| N15 |
C16 |
H16A |
C17 |
120.9 |
120.0 |
| H16A |
C16 |
N15 |
HN15 |
7.5 |
240.0 |
| N15 |
C16 |
H16A |
H16 |
240.5 |
240.0 |
| H16A |
C16 |
C17 |
C18 |
206.9 |
245.0 |
| C17 |
C16 |
H16A |
H16 |
119.5 |
119.9 |
| H16A |
C16 |
C17 |
H17 |
26.9 |
65.0 |
| C16 |
C17 |
H17 |
C18 |
180.0 |
180.0 |
| H17 |
C17 |
C16 |
H16 |
146.9 |
185.0 |
| H17 |
C17 |
C16 |
H16A |
26.9 |
65.0 |
| H17 |
C17 |
C18 |
H18 |
360.0 |
359.9 |
| H17 |
C17 |
C18 |
H18A |
180.0 |
180.0 |
| H18 |
C18 |
C17 |
H17 |
360.0 |
359.9 |
| C17 |
C18 |
H18 |
H18A |
180.0 |
180.1 |
| H18A |
C18 |
C17 |
H17 |
180.0 |
180.0 |
| C17 |
C18 |
H18A |
H18 |
180.0 |
179.9 |