PDB Chemical Component X25

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for X25

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C	C1	1.477	1.507
C1	C2	1.365	1.359
C1	C13	1.373	1.461
C2	O	1.193	1.350
C2	C14	1.321	1.469
O	C3	1.290	1.348
C14	N1	1.299	1.324
C14	O2	1.179	1.343
N1	C15	1.288	1.342
C15	C16	1.513	1.507
C15	N2	1.340	1.301
C16	C17	1.571	1.506
C17	C18	1.376	1.383
C17	C22	1.373	1.382
C18	C19	1.392	1.382
C19	C20	1.384	1.382
C20	C21	1.381	1.383
C21	C22	1.392	1.383
N2	O2	1.295	1.213
C3	C13	1.370	1.406
C3	C4	1.348	1.390
C13	C7	1.363	1.402
C4	C5	1.348	1.378
C5	C6	1.379	1.386
C6	C7	1.364	1.383
C7	O1	1.352	1.358
O1	C8	1.399	1.429
C8	C9	1.493	1.531
C8	C12	1.513	1.531
C9	C10	1.499	1.531
C10	N	1.435	1.468
N	C11	1.408	1.469
C11	C12	1.505	1.530
C	HC1	1.100	1.090
C	HC2	1.100	1.090
C	HC3	1.100	1.090
C16	H161	1.100	1.090
C16	H162	1.100	1.090
C18	H18	1.081	1.080
C22	H22	1.080	1.079
C19	H19	1.080	1.080
C20	H20	1.080	1.080
C21	H21	1.080	1.079
C4	H4	1.080	1.080
C5	H5	1.080	1.080
C6	H6	1.080	1.079
C8	H8	1.100	1.090
C9	H91C	1.099	1.090
C9	H92C	1.101	1.090
C12	H121	1.100	1.090
C12	H122	1.101	1.090
C10	H101	1.100	1.090
C10	H102	1.100	1.090
N	H	1.000	1.009
C11	H111	1.100	1.090
C11	H112	1.100	1.090

Bond Angles for X25

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C	C1	C2	132.6	126.9
C	C1	C13	122.4	127.0
C1	C	HC1	109.5	109.5
C1	C	HC2	109.5	109.4
C1	C	HC3	109.5	109.5
C2	C1	C13	104.9	106.1
C1	C2	O	114.9	109.7
C1	C2	C14	122.2	125.2
C1	C13	C3	100.6	105.8
C1	C13	C7	138.3	134.1
O	C2	C14	122.8	125.1
C2	O	C3	105.4	110.8
C2	C14	N1	120.5	126.7
C2	C14	O2	123.5	126.7
O	C3	C13	114.1	107.6
O	C3	C4	123.1	133.1
N1	C14	O2	115.7	106.6
C14	N1	C15	104.7	105.5
C14	O2	N2	105.1	109.7
N1	C15	C16	125.0	126.1
N1	C15	N2	104.9	107.7
C16	C15	N2	129.6	126.2
C15	C16	C17	101.8	109.5
C15	C16	H161	111.4	109.5
C15	C16	H162	111.4	109.4
C15	N2	O2	109.3	110.5
C16	C17	C18	119.2	120.0
C16	C17	C22	125.2	120.0
C17	C16	H161	111.3	109.5
C17	C16	H162	111.3	109.5
C18	C17	C22	115.5	120.0
C17	C18	C19	122.7	120.0
C17	C18	H18	118.6	120.0
C17	C22	C21	122.7	120.0
C17	C22	H22	118.6	120.0
C18	C19	C20	121.4	120.0
C19	C18	H18	118.6	120.0
C18	C19	H19	119.3	120.0
C19	C20	C21	116.2	120.0
C20	C19	H19	119.3	120.0
C19	C20	H20	121.9	120.0
C20	C21	C22	121.5	120.0
C21	C20	H20	121.9	120.0
C20	C21	H21	119.2	120.0
C21	C22	H22	118.7	120.0
C22	C21	H21	119.2	120.0
C13	C3	C4	122.8	119.3
C3	C13	C7	121.1	120.0
C3	C4	C5	116.5	120.1
C3	C4	H4	121.7	119.9
C13	C7	C6	116.1	119.5
C13	C7	O1	123.1	120.2
C4	C5	C6	121.5	120.9
C5	C4	H4	121.8	120.0
C4	C5	H5	119.2	119.6
C5	C6	C7	121.9	120.2
C6	C5	H5	119.3	119.5
C5	C6	H6	119.0	120.0
C6	C7	O1	120.8	120.3
C7	C6	H6	119.1	119.8
C7	O1	C8	116.2	117.0
O1	C8	C9	112.2	109.5
O1	C8	C12	115.3	109.5
O1	C8	H8	107.7	109.5
C9	C8	C12	108.3	109.2
C8	C9	C10	105.1	109.2
C9	C8	H8	106.6	109.6
C8	C9	H91C	110.6	109.5
C8	C9	H92C	110.6	109.5
C8	C12	C11	111.9	109.3
C12	C8	H8	106.3	109.6
C8	C12	H121	108.8	109.5
C8	C12	H122	108.9	109.5
C9	C10	N	111.6	109.5
C10	C9	H91C	110.6	109.5
C10	C9	H92C	110.5	109.5
C9	C10	H101	108.9	109.5
C9	C10	H102	108.9	109.4
C10	N	C11	121.4	111.2
N	C10	H101	108.9	109.5
N	C10	H102	108.9	109.4
C10	N	H	106.4	111.0
N	C11	C12	117.0	109.5
C11	N	H	106.4	111.0
N	C11	H111	107.5	109.4
N	C11	H112	107.6	109.5
C11	C12	H121	108.9	109.5
C11	C12	H122	108.9	109.5
C12	C11	H111	107.5	109.5
C12	C11	H112	107.5	109.5
HC1	C	HC2	109.4	109.5
HC1	C	HC3	109.5	109.5
HC2	C	HC3	109.5	109.5
H161	C16	H162	109.5	109.4
H91C	C9	H92C	109.5	109.5
H121	C12	H122	109.5	109.5
H101	C10	H102	109.5	109.5
H111	C11	H112	109.5	109.4

Torsion Angles for X25

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C	C13	183.2	180.3
C	C1	C2	O	175.3	180.0
C	C1	C2	C14	358.9	0.0
C	C1	C13	C3	181.8	179.9
C	C1	C13	C7	2.4	359.9
HC1	C	C1	HC2	240.0	240.0
HC1	C	C1	HC3	120.0	120.0
HC2	C	C1	HC3	240.0	240.0
C	C1	C2	C13	177.2	179.8
C2	C1	C	HC1	91.9	90.0
C2	C1	C	HC2	211.9	210.0
C2	C1	C	HC3	331.9	330.0
C2	C1	C13	C3	359.4	359.6
C2	C1	C13	C7	180.0	179.7
O	C2	C1	C14	176.5	180.0
C1	C2	O	C3	3.6	360.0
C1	C2	C14	N1	357.3	180.0
C1	C2	C14	O2	184.4	359.6
C	C1	C13	C2	182.4	180.2
C13	C1	C	HC1	268.7	269.7
C13	C1	C	HC2	28.7	29.7
C13	C1	C	HC3	148.7	149.8
C13	C1	C2	O	358.1	0.2
C13	C1	C2	C14	181.7	180.2
O	C3	C13	C1	2.9	0.4
C1	C13	C3	C4	181.6	180.1
C3	C13	C1	C7	179.4	179.9
C1	C13	C7	C6	179.3	179.2
C1	C13	C7	O1	359.7	0.0
O	C2	C1	C13	358.1	0.2
C1	C2	O	C14	183.6	180.0
O	C2	C14	N1	181.1	360.0
O	C2	C14	O2	8.2	179.6
C2	O	C3	C13	355.9	359.8
C2	O	C3	C4	177.2	180.0
C14	C2	C1	C13	181.7	180.2
C1	C2	C14	O	176.2	180.0
C14	C2	O	C3	180.0	180.0
N1	C14	C2	O2	172.9	180.3
C2	C14	N1	C15	181.0	179.9
C2	C14	O2	N2	177.7	179.9
C1	C13	C3	O	2.9	0.4
C3	O	C2	C14	180.0	180.0
C13	C3	O	C4	178.7	179.7
O	C3	C13	C7	182.4	180.3
O	C3	C4	C5	175.8	180.0
O	C3	C4	H4	355.8	0.0
C2	C14	N1	O2	186.5	179.7
N1	C14	O2	N2	4.4	359.6
C14	N1	C15	C16	176.5	180.0
C14	N1	C15	N2	3.9	0.0
C2	C14	O2	N1	173.2	180.3
O2	C14	N1	C15	354.5	0.2
C15	N2	O2	C14	358.4	0.4
C15	N1	C14	O2	354.5	0.2
C16	C15	N1	N2	172.6	180.0
N1	C15	C16	C17	290.1	90.0
N1	C15	C16	H161	48.9	210.1
N1	C15	C16	H162	171.4	330.0
N1	C15	N2	O2	358.4	359.7
N1	C15	C16	N2	189.3	180.0
C16	C15	N2	O2	186.3	179.7
C15	C16	C17	C18	310.8	90.0
C15	C16	C17	C22	125.4	269.7
C17	C16	C15	H161	241.3	239.9
C17	C16	C15	H162	118.7	120.0
H161	C16	C15	H162	237.5	240.1
C14	O2	N2	C15	358.4	0.4
N1	C15	N2	C16	172.1	180.0
N2	C15	C16	C17	100.8	270.0
N2	C15	C16	H161	219.6	30.1
N2	C15	C16	H162	342.1	150.0
C17	C16	C15	N2	100.8	270.0
C15	C16	C17	H161	118.8	120.0
C15	C16	C17	H162	241.3	240.0
C18	C17	C16	C22	185.4	180.3
C16	C17	C18	C19	178.0	180.0
C16	C17	C18	H18	358.0	359.9
C16	C17	C22	C21	182.4	179.8
C16	C17	C22	H22	2.4	0.0
H161	C16	C17	H162	122.5	120.0
C16	C17	C18	C22	175.1	179.7
C18	C17	C16	H161	192.1	330.0
C18	C17	C16	H162	69.6	210.0
C18	C17	C22	C21	357.2	359.5
C18	C17	C22	H22	177.2	179.8
C17	C18	C19	C20	358.3	0.0
C19	C18	C17	H18	180.0	180.0
C17	C18	C19	H19	178.3	179.9
C16	C17	C22	C18	185.2	180.3
C22	C17	C16	H161	6.7	149.7
C22	C17	C16	H162	244.2	29.7
C22	C17	C18	C19	2.9	0.3
C22	C17	C18	H18	182.9	180.2
C20	C21	C22	C17	1.6	0.4
C21	C22	C17	H22	180.0	179.8
C17	C22	C21	H21	181.6	180.3
C19	C18	C17	C22	2.9	0.3
C17	C18	C19	H18	180.0	180.0
C18	C19	C20	C21	0.2	359.9
C20	C19	C18	H19	180.0	180.1
C18	C19	C20	H20	180.2	179.9
C20	C19	C18	H18	178.3	180.1
C18	C19	C20	H19	180.0	179.9
C19	C20	C21	C22	359.8	359.8
C21	C20	C19	H20	180.0	180.0
C19	C20	C21	H21	179.8	180.0
C17	C22	C21	C20	1.6	0.4
C21	C20	C19	H19	180.3	180.0
C19	C20	C21	H20	180.0	180.0
C20	C21	C22	H22	181.6	180.2
C22	C21	C20	H21	180.0	179.8
C17	C22	C21	H22	180.0	180.2
C22	C21	C20	H20	179.8	179.8
C20	C21	C22	H21	180.0	180.2
C1	C13	C3	C7	180.5	180.1
O	C3	C13	C4	181.2	180.2
C13	C3	C4	C5	357.1	0.3
C13	C3	C4	H4	177.1	180.3
C3	C13	C7	C6	0.1	359.3
C3	C13	C7	O1	180.4	180.1
O	C3	C4	C13	178.6	179.7
C4	C3	C13	C7	1.1	0.1
C3	C4	C5	C6	3.6	360.0
C5	C4	C3	H4	180.0	180.0
C3	C4	C5	H5	183.6	180.0
C1	C13	C7	C3	179.3	179.9
C7	C13	C3	C4	1.1	0.1
C5	C6	C7	C13	0.7	1.0
C6	C7	C13	O1	179.6	179.2
C13	C7	C6	H6	180.7	180.4
C13	C7	O1	C8	130.2	184.6
C3	C4	C5	H4	180.0	180.0
C4	C5	C6	C7	357.3	359.4
C6	C5	C4	H5	180.0	180.0
C4	C5	C6	H6	177.3	180.0
C13	C7	C6	C5	0.7	1.0
C6	C5	C4	H4	183.6	180.0
C4	C5	C6	H5	180.0	180.0
C5	C6	C7	O1	180.3	180.2
C7	C6	C5	H6	180.0	179.4
C13	C7	C6	O1	180.4	180.8
C7	C6	C5	H5	177.3	179.3
C5	C6	C7	H6	180.0	180.6
C6	C7	O1	C8	310.6	5.4
C13	C7	O1	C6	179.6	179.2
O1	C7	C6	H6	0.4	359.6
C7	O1	C8	C9	124.7	155.2
C7	O1	C8	C12	249.3	274.9
C7	O1	C8	H8	7.7	35.1
C9	C8	O1	C12	235.4	240.3
O1	C8	C9	C10	58.5	177.6
C9	C8	O1	H8	116.9	120.2
O1	C8	C9	H91C	177.8	297.5
O1	C8	C9	H92C	299.2	57.6
O1	C8	C12	C11	287.9	182.4
C12	C8	O1	H8	241.6	239.8
O1	C8	C12	H121	48.3	302.4
O1	C8	C12	H122	167.5	62.5
O1	C8	C9	C12	128.4	119.9
O1	C8	C9	H8	242.4	239.9
C9	C8	C12	C11	54.5	302.3
C12	C8	C9	H8	114.0	120.0
C9	C8	C12	H121	174.9	62.3
C9	C8	C12	H122	294.2	182.3
C8	C9	C10	N	60.4	300.8
C10	C9	C8	H91C	240.7	240.1
C10	C9	C8	H92C	119.3	119.9
C8	C9	C10	H101	180.7	60.8
C8	C9	C10	H102	300.0	180.8
H91C	C9	C8	H92C	238.6	239.9
O1	C8	C12	C9	233.4	240.1
O1	C8	C12	H8	119.2	120.1
C12	C8	C9	C10	290.1	57.7
C9	C8	C12	H8	245.8	240.0
C12	C8	C9	H91C	49.4	177.6
C12	C8	C9	H92C	170.8	297.7
N	C11	C12	C8	331.1	59.2
C11	C12	C8	H121	239.6	240.0
C11	C12	C8	H122	120.4	120.0
C8	C12	C11	H111	210.0	299.2
C8	C12	C11	H112	92.2	179.2
H121	C12	C8	H122	240.7	239.9
C10	C9	C8	C12	290.1	57.7
C10	C9	C8	H8	176.1	297.7
C8	C9	C10	H91C	119.3	119.9
C8	C9	C10	H92C	240.7	240.0
C9	C10	N	C11	322.7	61.8
N	C10	C9	H101	239.7	239.9
N	C10	C9	H102	120.3	120.0
C9	C10	N	H	84.3	185.8
H91C	C9	C10	H92C	121.4	120.1
H101	C10	C9	H102	240.7	240.0
N	C10	C9	H91C	301.0	180.9
N	C10	C9	H92C	179.7	60.7
C9	C10	N	H101	120.3	120.1
C9	C10	N	H102	239.7	240.1
C10	N	C11	C12	21.0	298.2
C11	N	C10	H	238.3	236.0
C10	N	C11	H111	142.1	58.3
C10	N	C11	H112	259.9	178.2
H101	C10	N	H102	119.4	120.0
C8	C12	C11	N	331.1	59.2
C11	N	C10	H101	202.3	301.7
C11	N	C10	H102	83.0	181.7
C10	N	C11	H	121.7	124.0
N	C11	C12	H121	210.8	299.2
N	C11	C12	H122	91.5	179.1
C12	C11	N	H111	238.9	240.0
C12	C11	N	H112	121.1	120.0
H111	C11	N	H112	242.2	240.1
C11	C12	C8	H8	168.7	62.3
C8	C12	C11	H121	120.3	119.9
C8	C12	C11	H122	239.6	240.0
C12	C11	N	H	259.3	174.2
N	C11	C12	H111	121.1	120.0
N	C11	C12	H112	238.9	240.0
H121	C12	C11	H122	119.3	120.1
H111	C11	C12	H112	117.8	120.0
HC1	C	C1	C2	91.9	90.0
HC1	C	C1	C13	268.7	269.7
C1	C	HC1	HC2	120.0	120.0
C1	C	HC1	HC3	240.0	240.0
HC2	C	HC1	HC3	120.0	120.0
HC2	C	C1	C2	211.9	210.0
HC2	C	C1	C13	28.7	29.7
C1	C	HC2	HC1	240.0	240.0
C1	C	HC2	HC3	120.0	120.0
HC1	C	HC2	HC3	240.0	240.0
HC3	C	C1	C2	331.9	330.0
HC3	C	C1	C13	148.7	149.8
C1	C	HC3	HC1	120.0	120.0
C1	C	HC3	HC2	240.0	240.0
HC1	C	HC3	HC2	120.0	120.0
H161	C16	C15	N2	219.6	30.1
C15	C16	H161	C17	247.1	240.0
C15	C16	H161	H162	123.6	119.9
H161	C16	C17	C18	192.1	330.0
H161	C16	C17	C22	6.7	149.7
C17	C16	H161	H162	236.4	240.0
H162	C16	C15	N2	342.1	150.0
C15	C16	H162	C17	112.8	120.0
C15	C16	H162	H161	236.4	240.1
H162	C16	C17	C18	69.6	210.0
H162	C16	C17	C22	244.2	29.7
C17	C16	H162	H161	123.6	120.1
H18	C18	C17	C22	182.9	180.2
C17	C18	H18	C19	180.0	180.0
H18	C18	C19	C20	178.3	180.1
H18	C18	C19	H19	358.3	360.0
C17	C22	H22	C21	180.0	179.8
H22	C22	C21	H21	1.6	0.0
C18	C19	H19	C20	180.0	180.1
H19	C19	C18	H18	358.3	360.0
H19	C19	C20	C21	180.3	180.0
H19	C19	C20	H20	0.3	0.0
C19	C20	H20	C21	180.0	180.0
H20	C20	C19	H19	0.3	0.0
H20	C20	C21	C22	179.8	179.8
H20	C20	C21	H21	359.8	0.0
C20	C21	H21	C22	180.0	179.8
H21	C21	C20	H20	359.8	0.0
H21	C21	C22	H22	1.6	0.0
C3	C4	H4	C5	180.0	180.0
H4	C4	C5	C6	183.6	180.0
H4	C4	C5	H5	3.6	0.0
C4	C5	H5	C6	180.0	180.0
H5	C5	C4	H4	3.6	0.0
H5	C5	C6	C7	177.3	179.3
H5	C5	C6	H6	357.3	359.9
C5	C6	H6	C7	180.0	179.4
H6	C6	C5	H5	357.3	359.9
H6	C6	C7	O1	0.4	359.6
O1	C8	H8	C9	120.6	120.1
O1	C8	H8	C12	235.9	239.9
C9	C8	H8	C12	115.4	119.8
H8	C8	C9	C10	176.1	297.7
H8	C8	C9	H91C	295.4	57.6
H8	C8	C9	H92C	56.8	177.7
H8	C8	C12	C11	168.7	62.3
H8	C8	C12	H121	289.1	182.3
H8	C8	C12	H122	48.3	302.3
H91C	C9	C8	C12	49.4	177.6
C8	C9	H91C	C10	244.1	240.3
H91C	C9	C8	H8	295.4	57.6
C8	C9	H91C	H92C	122.0	120.1
H91C	C9	C10	N	301.0	180.9
C10	C9	H91C	H92C	238.0	239.9
H91C	C9	C10	H101	61.4	300.9
H91C	C9	C10	H102	180.7	60.9
H92C	C9	C8	C12	170.8	297.7
C8	C9	H92C	C10	115.9	119.8
H92C	C9	C8	H8	56.8	177.7
C8	C9	H92C	H91C	238.0	239.9
H92C	C9	C10	N	179.7	60.7
C10	C9	H92C	H91C	122.0	120.1
H92C	C9	C10	H101	300.0	180.8
H92C	C9	C10	H102	59.3	300.8
C8	C12	H121	C11	237.8	240.2
H121	C12	C8	H8	289.1	182.3
C8	C12	H121	H122	118.9	120.1
C11	C12	H121	H122	241.1	239.9
H121	C12	C11	H111	89.7	179.2
H121	C12	C11	H112	331.9	59.2
C8	C12	H122	C11	122.2	119.8
H122	C12	C8	H8	48.3	302.3
C8	C12	H122	H121	241.1	239.9
C11	C12	H122	H121	118.9	120.1
H122	C12	C11	H111	330.4	59.1
H122	C12	C11	H112	212.6	299.1
C9	C10	H101	N	238.0	239.9
H101	C10	C9	H91C	61.4	300.9
H101	C10	C9	H92C	300.0	180.8
C9	C10	H101	H102	119.0	119.9
H101	C10	N	C11	202.3	301.7
N	C10	H101	H102	241.0	240.0
H101	C10	N	H	324.0	65.8
C9	C10	H102	N	122.0	120.0
H102	C10	C9	H91C	180.7	60.9
H102	C10	C9	H92C	59.3	300.8
C9	C10	H102	H101	241.0	240.0
H102	C10	N	C11	83.0	181.7
N	C10	H102	H101	119.0	120.0
H102	C10	N	H	204.6	305.8
C10	N	H	C11	229.2	235.8
H	N	C10	H101	324.0	65.8
H	N	C10	H102	204.6	305.8
H	N	C11	C12	259.3	174.2
H	N	C11	H111	20.4	294.2
H	N	C11	H112	138.2	54.1
N	C11	H111	C12	233.1	240.0
H111	C11	N	H	20.4	294.2
N	C11	H111	H112	116.6	119.9
H111	C11	C12	H121	89.7	179.2
H111	C11	C12	H122	330.4	59.1
C12	C11	H111	H112	243.4	240.0
N	C11	H112	C12	126.9	120.0
H112	C11	N	H	138.2	54.1
N	C11	H112	H111	243.4	240.1
H112	C11	C12	H121	331.9	59.2
H112	C11	C12	H122	212.6	299.1
C12	C11	H112	H111	116.6	120.0