PDB Chemical Component X1N
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for X1N
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O9B |
N7B |
1.452 |
1.218 |
| N7B |
O8B |
1.463 |
1.217 |
| N7B |
C3B |
1.338 |
1.481 |
| C3B |
C2B |
1.395 |
1.351 |
| C3B |
C4B |
1.394 |
1.455 |
| C2B |
C1B |
1.378 |
1.412 |
| C4B |
C5B |
1.386 |
1.335 |
| C5B |
C6B |
1.393 |
1.513 |
| C6B |
C1B |
1.392 |
1.514 |
| C1B |
N7 |
1.324 |
1.312 |
| N7 |
C2 |
1.332 |
1.361 |
| C2 |
N3 |
1.326 |
1.332 |
| C2 |
N1 |
1.344 |
1.330 |
| N3 |
C4 |
1.338 |
1.324 |
| C4 |
C5A |
1.380 |
1.472 |
| C4 |
C5 |
1.374 |
1.404 |
| C5A |
S4A |
1.678 |
1.750 |
| C5A |
C1A |
1.393 |
1.369 |
| S4A |
C3A |
1.697 |
1.710 |
| C3A |
C20 |
1.389 |
1.507 |
| C3A |
N2A |
1.339 |
1.292 |
| N2A |
C1A |
1.360 |
1.313 |
| C1A |
C6A |
1.526 |
1.519 |
| C6A |
C60 |
1.517 |
1.526 |
| C60 |
C5 |
1.521 |
1.501 |
| C5 |
C6 |
1.387 |
1.382 |
| C6 |
N1 |
1.315 |
1.324 |
| C2B |
H2B |
1.080 |
1.079 |
| C4B |
H4B |
1.080 |
1.080 |
| C5B |
H5B |
1.080 |
1.080 |
| C6B |
H6B1 |
1.100 |
1.090 |
| C6B |
H6B2 |
1.100 |
1.090 |
| C20 |
H201 |
1.100 |
1.090 |
| C20 |
H202 |
1.100 |
1.090 |
| C20 |
H203 |
1.099 |
1.091 |
| C6A |
H6A1 |
1.100 |
1.090 |
| C6A |
H6A2 |
1.100 |
1.090 |
| C60 |
H601 |
1.100 |
1.090 |
| C60 |
H602 |
1.100 |
1.090 |
| C6 |
H6 |
1.080 |
1.080 |
Bond Angles for X1N
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O9B |
N7B |
O8B |
120.2 |
120.0 |
| O9B |
N7B |
C3B |
121.0 |
120.0 |
| O8B |
N7B |
C3B |
118.8 |
120.0 |
| N7B |
C3B |
C2B |
119.9 |
118.6 |
| N7B |
C3B |
C4B |
119.0 |
118.6 |
| C2B |
C3B |
C4B |
121.1 |
122.8 |
| C3B |
C2B |
C1B |
119.6 |
120.9 |
| C3B |
C2B |
H2B |
120.2 |
119.5 |
| C3B |
C4B |
C5B |
119.7 |
121.6 |
| C3B |
C4B |
H4B |
120.2 |
119.2 |
| C2B |
C1B |
C6B |
118.8 |
118.3 |
| C2B |
C1B |
N7 |
121.6 |
120.8 |
| C1B |
C2B |
H2B |
120.2 |
119.6 |
| C4B |
C5B |
C6B |
118.4 |
118.8 |
| C5B |
C4B |
H4B |
120.1 |
119.2 |
| C4B |
C5B |
H5B |
120.8 |
120.6 |
| C5B |
C6B |
C1B |
122.3 |
117.6 |
| C6B |
C5B |
H5B |
120.8 |
120.6 |
| C5B |
C6B |
H6B1 |
105.4 |
107.8 |
| C5B |
C6B |
H6B2 |
102.4 |
107.9 |
| C6B |
C1B |
N7 |
119.3 |
120.9 |
| C1B |
C6B |
H6B1 |
105.4 |
107.6 |
| C1B |
C6B |
H6B2 |
102.4 |
108.0 |
| C1B |
N7 |
C2 |
129.5 |
120.0 |
| N7 |
C2 |
N3 |
123.5 |
119.3 |
| N7 |
C2 |
N1 |
117.1 |
119.2 |
| N3 |
C2 |
N1 |
119.3 |
121.5 |
| C2 |
N3 |
C4 |
119.7 |
120.0 |
| C2 |
N1 |
C6 |
123.9 |
121.4 |
| N3 |
C4 |
C5A |
120.8 |
123.0 |
| N3 |
C4 |
C5 |
121.1 |
119.9 |
| C5A |
C4 |
C5 |
118.1 |
117.1 |
| C4 |
C5A |
S4A |
132.3 |
129.7 |
| C4 |
C5A |
C1A |
123.1 |
121.7 |
| C4 |
C5 |
C60 |
123.8 |
120.8 |
| C4 |
C5 |
C6 |
118.6 |
118.1 |
| S4A |
C5A |
C1A |
104.5 |
108.6 |
| C5A |
S4A |
C3A |
97.7 |
90.2 |
| C5A |
C1A |
N2A |
116.0 |
112.7 |
| C5A |
C1A |
C6A |
121.3 |
120.4 |
| S4A |
C3A |
C20 |
118.5 |
124.8 |
| S4A |
C3A |
N2A |
106.5 |
110.4 |
| C20 |
C3A |
N2A |
134.9 |
124.8 |
| C3A |
C20 |
H201 |
109.5 |
109.5 |
| C3A |
C20 |
H202 |
109.5 |
109.4 |
| C3A |
C20 |
H203 |
109.5 |
109.5 |
| C3A |
N2A |
C1A |
115.2 |
118.0 |
| N2A |
C1A |
C6A |
122.7 |
126.8 |
| C1A |
C6A |
C60 |
112.1 |
109.9 |
| C1A |
C6A |
H6A1 |
108.6 |
109.4 |
| C1A |
C6A |
H6A2 |
108.0 |
109.4 |
| C6A |
C60 |
C5 |
113.1 |
112.4 |
| C60 |
C6A |
H6A1 |
108.6 |
109.4 |
| C60 |
C6A |
H6A2 |
108.0 |
109.4 |
| C6A |
C60 |
H601 |
108.3 |
108.9 |
| C6A |
C60 |
H602 |
107.5 |
108.9 |
| C60 |
C5 |
C6 |
117.6 |
121.1 |
| C5 |
C60 |
H601 |
108.3 |
108.9 |
| C5 |
C60 |
H602 |
107.5 |
108.9 |
| C5 |
C6 |
N1 |
117.4 |
119.1 |
| C5 |
C6 |
H6 |
121.3 |
120.4 |
| N1 |
C6 |
H6 |
121.3 |
120.5 |
| H6B1 |
C6B |
H6B2 |
120.2 |
107.6 |
| H201 |
C20 |
H202 |
109.5 |
109.5 |
| H201 |
C20 |
H203 |
109.4 |
109.5 |
| H202 |
C20 |
H203 |
109.5 |
109.5 |
| H6A1 |
C6A |
H6A2 |
111.6 |
109.3 |
| H601 |
C60 |
H602 |
112.4 |
108.9 |
Torsion Angles for X1N
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O8B |
N7B |
O9B |
C3B |
178.6 |
180.3 |
| O9B |
N7B |
C3B |
C2B |
30.1 |
0.0 |
| O9B |
N7B |
C3B |
C4B |
208.0 |
179.7 |
| O9B |
N7B |
O8B |
C3B |
181.4 |
179.7 |
| O8B |
N7B |
C3B |
C2B |
211.5 |
179.7 |
| O8B |
N7B |
C3B |
C4B |
29.4 |
359.4 |
| O9B |
N7B |
C3B |
O8B |
178.6 |
180.3 |
| C2B |
C3B |
N7B |
C4B |
182.1 |
180.3 |
| N7B |
C3B |
C2B |
C1B |
180.6 |
180.0 |
| N7B |
C3B |
C2B |
H2B |
0.6 |
360.0 |
| N7B |
C3B |
C4B |
C5B |
181.2 |
180.1 |
| N7B |
C3B |
C4B |
H4B |
1.2 |
360.0 |
| N7B |
C3B |
C2B |
C4B |
177.8 |
179.7 |
| C2B |
C3B |
C4B |
C5B |
359.1 |
359.7 |
| C2B |
C3B |
C4B |
H4B |
179.1 |
179.7 |
| C3B |
C2B |
C1B |
C6B |
356.1 |
360.0 |
| C3B |
C2B |
C1B |
N7 |
182.7 |
180.0 |
| C1B |
C2B |
C3B |
H2B |
180.0 |
180.0 |
| N7B |
C3B |
C4B |
C2B |
182.1 |
180.3 |
| C4B |
C3B |
C2B |
C1B |
2.8 |
0.3 |
| C4B |
C3B |
C2B |
H2B |
182.7 |
180.3 |
| C3B |
C4B |
C5B |
C6B |
0.3 |
360.0 |
| C5B |
C4B |
C3B |
H4B |
180.0 |
180.1 |
| C3B |
C4B |
C5B |
H5B |
180.3 |
180.0 |
| C1B |
C2B |
C3B |
C4B |
2.8 |
0.3 |
| C3B |
C2B |
C1B |
H2B |
180.0 |
180.0 |
| C5B |
C6B |
C1B |
C2B |
3.5 |
359.7 |
| C6B |
C1B |
C2B |
N7 |
173.4 |
180.0 |
| C2B |
C1B |
C6B |
H6B1 |
243.5 |
237.9 |
| C2B |
C1B |
C6B |
H6B2 |
117.0 |
122.0 |
| C2B |
C1B |
N7 |
C2 |
307.4 |
354.7 |
| C3B |
C4B |
C5B |
H4B |
180.0 |
179.9 |
| C4B |
C5B |
C6B |
C1B |
358.4 |
0.3 |
| C6B |
C5B |
C4B |
H5B |
180.0 |
179.9 |
| C4B |
C5B |
C6B |
H6B1 |
118.4 |
122.1 |
| C4B |
C5B |
C6B |
H6B2 |
244.9 |
238.0 |
| C2B |
C1B |
C6B |
C5B |
3.5 |
359.7 |
| C6B |
C5B |
C4B |
H4B |
180.3 |
180.0 |
| C4B |
C5B |
C6B |
H5B |
180.0 |
180.1 |
| C5B |
C6B |
C1B |
N7 |
177.0 |
179.8 |
| C1B |
C6B |
C5B |
H6B1 |
240.0 |
238.2 |
| C1B |
C6B |
C5B |
H6B2 |
113.5 |
122.3 |
| H6B1 |
C6B |
C5B |
H6B2 |
233.5 |
244.1 |
| C2B |
C1B |
C6B |
N7 |
186.5 |
180.0 |
| C6B |
C1B |
C2B |
H2B |
176.1 |
180.0 |
| C1B |
C6B |
C5B |
H5B |
178.3 |
180.2 |
| C5B |
C6B |
C1B |
H6B1 |
120.0 |
121.9 |
| C5B |
C6B |
C1B |
H6B2 |
246.5 |
237.7 |
| C6B |
C1B |
N7 |
C2 |
134.0 |
174.6 |
| H6B1 |
C6B |
C1B |
H6B2 |
126.5 |
115.9 |
| C2B |
C1B |
N7 |
C6B |
173.3 |
180.0 |
| N7 |
C1B |
C2B |
H2B |
2.7 |
360.0 |
| N7 |
C1B |
C6B |
H6B1 |
57.0 |
57.9 |
| N7 |
C1B |
C6B |
H6B2 |
290.5 |
302.0 |
| C1B |
N7 |
C2 |
N3 |
21.8 |
94.9 |
| C1B |
N7 |
C2 |
N1 |
198.7 |
274.6 |
| N3 |
C2 |
N7 |
N1 |
183.1 |
180.3 |
| N7 |
C2 |
N3 |
C4 |
178.9 |
180.0 |
| N7 |
C2 |
N1 |
C6 |
181.3 |
180.5 |
| N7 |
C2 |
N3 |
N1 |
176.8 |
179.7 |
| N3 |
C2 |
N1 |
C6 |
358.3 |
0.2 |
| C2 |
N3 |
C4 |
C5A |
180.3 |
178.8 |
| C2 |
N3 |
C4 |
C5 |
358.6 |
358.6 |
| N7 |
C2 |
N1 |
N3 |
183.0 |
180.3 |
| N1 |
C2 |
N3 |
C4 |
2.0 |
0.3 |
| C5 |
C6 |
N1 |
C2 |
0.6 |
0.4 |
| C2 |
N1 |
C6 |
H6 |
180.5 |
180.2 |
| C4 |
N3 |
C2 |
N1 |
2.0 |
0.3 |
| C5A |
C4 |
N3 |
C5 |
181.6 |
180.2 |
| N3 |
C4 |
C5A |
S4A |
348.9 |
12.9 |
| N3 |
C4 |
C5A |
C1A |
166.6 |
194.4 |
| N3 |
C4 |
C5 |
C60 |
179.6 |
182.8 |
| N3 |
C4 |
C5 |
C6 |
0.2 |
2.0 |
| N3 |
C4 |
C5A |
C5 |
178.4 |
179.8 |
| C5A |
C4 |
C5 |
C60 |
358.0 |
2.7 |
| C5A |
C4 |
C5 |
C6 |
178.7 |
181.8 |
| S4A |
C5A |
C4 |
C1A |
182.4 |
178.5 |
| C4 |
C5A |
S4A |
C3A |
179.0 |
179.4 |
| C4 |
C5A |
C1A |
N2A |
181.3 |
181.4 |
| C4 |
C5A |
C1A |
C6A |
1.0 |
2.5 |
| N3 |
C4 |
C5 |
C5A |
181.6 |
180.2 |
| C5 |
C4 |
C5A |
S4A |
170.5 |
193.1 |
| C5 |
C4 |
C5A |
C1A |
348.2 |
14.6 |
| C6A |
C60 |
C5 |
C4 |
24.9 |
325.6 |
| C60 |
C5 |
C4 |
C6 |
179.3 |
180.8 |
| C4 |
C5 |
C60 |
H601 |
264.9 |
204.9 |
| C4 |
C5 |
C60 |
H602 |
143.4 |
86.3 |
| C4 |
C5 |
C6 |
N1 |
0.2 |
358.5 |
| C4 |
C5 |
C6 |
H6 |
180.2 |
178.7 |
| S4A |
C5A |
C4 |
C5 |
170.5 |
193.1 |
| C4 |
C5A |
S4A |
C1A |
178.0 |
181.3 |
| S4A |
C5A |
C1A |
N2A |
359.5 |
2.6 |
| S4A |
C5A |
C1A |
C6A |
179.2 |
183.7 |
| C5A |
S4A |
C3A |
C20 |
179.5 |
180.9 |
| C5A |
S4A |
C3A |
N2A |
358.6 |
0.9 |
| C1A |
C5A |
C4 |
C5 |
348.2 |
14.6 |
| C4 |
C5A |
C1A |
S4A |
181.8 |
178.8 |
| C1A |
C5A |
S4A |
C3A |
1.0 |
358.0 |
| C3A |
N2A |
C1A |
C5A |
359.4 |
358.0 |
| N2A |
C1A |
C5A |
C6A |
180.4 |
178.9 |
| C5A |
C1A |
C6A |
C60 |
22.0 |
326.3 |
| C5A |
C1A |
C6A |
H6A1 |
142.0 |
86.5 |
| C5A |
C1A |
C6A |
H6A2 |
263.1 |
206.3 |
| C3A |
S4A |
C5A |
C1A |
1.0 |
358.0 |
| C20 |
C3A |
S4A |
N2A |
180.9 |
179.9 |
| S4A |
C3A |
C20 |
H201 |
325.2 |
0.1 |
| S4A |
C3A |
C20 |
H202 |
85.2 |
120.0 |
| S4A |
C3A |
C20 |
H203 |
205.2 |
240.0 |
| S4A |
C3A |
N2A |
C1A |
1.3 |
0.4 |
| S4A |
C3A |
C20 |
N2A |
178.8 |
180.1 |
| C20 |
C3A |
N2A |
C1A |
180.2 |
180.5 |
| H201 |
C20 |
C3A |
H202 |
240.0 |
240.0 |
| H201 |
C20 |
C3A |
H203 |
120.0 |
120.0 |
| H202 |
C20 |
C3A |
H203 |
240.0 |
240.0 |
| C5A |
C1A |
N2A |
C3A |
359.4 |
358.0 |
| S4A |
C3A |
N2A |
C20 |
181.1 |
179.9 |
| N2A |
C3A |
C20 |
H201 |
146.3 |
180.0 |
| N2A |
C3A |
C20 |
H202 |
266.4 |
300.0 |
| N2A |
C3A |
C20 |
H203 |
26.4 |
60.0 |
| C3A |
N2A |
C1A |
C6A |
179.8 |
176.8 |
| C5A |
C1A |
N2A |
C6A |
179.6 |
181.2 |
| N2A |
C1A |
C6A |
C60 |
201.6 |
147.6 |
| N2A |
C1A |
C6A |
H6A1 |
321.6 |
267.8 |
| N2A |
C1A |
C6A |
H6A2 |
82.8 |
27.5 |
| C5A |
C1A |
C6A |
N2A |
180.4 |
178.7 |
| C1A |
C6A |
C60 |
C5 |
327.8 |
47.5 |
| C60 |
C6A |
C1A |
H6A1 |
240.0 |
239.8 |
| C60 |
C6A |
C1A |
H6A2 |
118.9 |
120.1 |
| C1A |
C6A |
C60 |
H601 |
87.8 |
168.2 |
| C1A |
C6A |
C60 |
H602 |
209.3 |
286.8 |
| H6A1 |
C6A |
C1A |
H6A2 |
238.8 |
240.2 |
| C4 |
C5 |
C60 |
C6A |
24.9 |
325.6 |
| C1A |
C6A |
C60 |
H6A1 |
120.0 |
120.2 |
| C1A |
C6A |
C60 |
H6A2 |
241.1 |
239.9 |
| C6A |
C60 |
C5 |
C6 |
204.2 |
146.4 |
| C5 |
C60 |
C6A |
H601 |
240.0 |
239.3 |
| C5 |
C60 |
C6A |
H602 |
118.4 |
120.7 |
| H6A1 |
C6A |
C60 |
H6A2 |
121.1 |
119.8 |
| H601 |
C60 |
C6A |
H602 |
238.4 |
241.4 |
| C4 |
C5 |
C60 |
C6 |
180.7 |
179.1 |
| C5 |
C60 |
C6A |
H6A1 |
207.8 |
287.3 |
| C5 |
C60 |
C6A |
H6A2 |
86.7 |
167.6 |
| C6A |
C60 |
C5 |
H601 |
120.0 |
120.7 |
| C6A |
C60 |
C5 |
H602 |
241.6 |
239.2 |
| C60 |
C5 |
C6 |
N1 |
180.8 |
177.7 |
| C60 |
C5 |
C6 |
H6 |
0.8 |
357.9 |
| H601 |
C60 |
C5 |
H602 |
121.6 |
118.5 |
| C2 |
N1 |
C6 |
C5 |
0.6 |
0.4 |
| C4 |
C5 |
C6 |
C60 |
179.4 |
180.8 |
| C6 |
C5 |
C60 |
H601 |
84.3 |
25.7 |
| C6 |
C5 |
C60 |
H602 |
322.7 |
267.2 |
| N1 |
C6 |
C5 |
H6 |
180.0 |
179.8 |
| C5 |
C6 |
N1 |
H6 |
180.0 |
180.2 |
| H2B |
C2B |
C3B |
C4B |
182.7 |
180.3 |
| C3B |
C2B |
H2B |
C1B |
180.0 |
180.0 |
| H2B |
C2B |
C1B |
C6B |
176.1 |
180.0 |
| H2B |
C2B |
C1B |
N7 |
2.7 |
360.0 |
| C3B |
C4B |
H4B |
C5B |
180.0 |
180.1 |
| H4B |
C4B |
C5B |
C6B |
180.3 |
180.0 |
| H4B |
C4B |
C5B |
H5B |
0.4 |
0.1 |
| C4B |
C5B |
H5B |
C6B |
180.0 |
179.9 |
| H5B |
C5B |
C4B |
H4B |
0.4 |
0.1 |
| H5B |
C5B |
C6B |
C1B |
178.3 |
180.2 |
| H5B |
C5B |
C6B |
H6B1 |
298.3 |
302.0 |
| H5B |
C5B |
C6B |
H6B2 |
64.9 |
57.9 |
| C5B |
C6B |
H6B1 |
C1B |
229.4 |
232.2 |
| H6B1 |
C6B |
C5B |
H5B |
298.3 |
302.0 |
| C5B |
C6B |
H6B1 |
H6B2 |
114.7 |
116.1 |
| H6B1 |
C6B |
C1B |
N7 |
57.0 |
57.9 |
| C1B |
C6B |
H6B1 |
H6B2 |
245.3 |
243.9 |
| C5B |
C6B |
H6B2 |
C1B |
127.5 |
128.1 |
| H6B2 |
C6B |
C5B |
H5B |
64.9 |
57.9 |
| C5B |
C6B |
H6B2 |
H6B1 |
243.7 |
244.0 |
| H6B2 |
C6B |
C1B |
N7 |
290.5 |
302.0 |
| C1B |
C6B |
H6B2 |
H6B1 |
116.3 |
115.9 |
| H201 |
C20 |
C3A |
N2A |
146.3 |
180.0 |
| C3A |
C20 |
H201 |
H202 |
120.0 |
119.9 |
| C3A |
C20 |
H201 |
H203 |
240.0 |
240.0 |
| H202 |
C20 |
H201 |
H203 |
120.0 |
120.0 |
| H202 |
C20 |
C3A |
N2A |
266.4 |
300.0 |
| C3A |
C20 |
H202 |
H201 |
240.0 |
240.0 |
| C3A |
C20 |
H202 |
H203 |
120.0 |
120.0 |
| H201 |
C20 |
H202 |
H203 |
240.0 |
240.0 |
| H203 |
C20 |
C3A |
N2A |
26.4 |
60.0 |
| C3A |
C20 |
H203 |
H201 |
120.0 |
120.0 |
| C3A |
C20 |
H203 |
H202 |
240.0 |
240.0 |
| H201 |
C20 |
H203 |
H202 |
120.0 |
120.0 |
| C1A |
C6A |
H6A1 |
C60 |
237.8 |
239.6 |
| C1A |
C6A |
H6A1 |
H6A2 |
118.9 |
119.8 |
| H6A1 |
C6A |
C60 |
C5 |
207.8 |
287.3 |
| C60 |
C6A |
H6A1 |
H6A2 |
241.1 |
240.2 |
| H6A1 |
C6A |
C60 |
H601 |
327.8 |
48.0 |
| H6A1 |
C6A |
C60 |
H602 |
89.4 |
166.6 |
| C1A |
C6A |
H6A2 |
C60 |
121.5 |
120.4 |
| C1A |
C6A |
H6A2 |
H6A1 |
240.7 |
240.2 |
| H6A2 |
C6A |
C60 |
C5 |
86.7 |
167.6 |
| C60 |
C6A |
H6A2 |
H6A1 |
119.2 |
119.8 |
| H6A2 |
C6A |
C60 |
H601 |
206.6 |
288.2 |
| H6A2 |
C6A |
C60 |
H602 |
328.2 |
46.8 |
| C6A |
C60 |
H601 |
C5 |
237.0 |
237.2 |
| H601 |
C60 |
C6A |
H6A1 |
327.8 |
48.0 |
| H601 |
C60 |
C6A |
H6A2 |
206.6 |
288.2 |
| C6A |
C60 |
H601 |
H602 |
118.5 |
118.6 |
| H601 |
C60 |
C5 |
C6 |
84.3 |
25.7 |
| C5 |
C60 |
H601 |
H602 |
241.5 |
241.5 |
| C6A |
C60 |
H602 |
C5 |
122.0 |
122.9 |
| H602 |
C60 |
C6A |
H6A1 |
89.4 |
166.6 |
| H602 |
C60 |
C6A |
H6A2 |
328.2 |
46.8 |
| C6A |
C60 |
H602 |
H601 |
241.0 |
241.4 |
| H602 |
C60 |
C5 |
C6 |
322.7 |
267.2 |
| C5 |
C60 |
H602 |
H601 |
119.0 |
118.5 |
| C5 |
C6 |
H6 |
N1 |
180.0 |
179.8 |