Atom Nomenclature for X19

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for X19

Atom Name (V3) Atom Name (V2)
N01 N01
N02 N02
N03 N03
C04 C04
C05 C05
C06 C06
C07 C07
C08 C08
C09 C09
C10 C10
C11 C11
C12 C12
C13 C13
C14 C14
C15 C15
C16 C16
C17 C17
O18 O18
HN01 HN01
HN03 HN03
H07 H07
H07A H07A
H08 H08
H08A H08A
H09 H09
H10 H10
H10A H10A
H13 H13
H13A H13A
H13B H13B
H14 H14
H14A H14A
H14B H14B
H15 H15
H15A H15A
H15B H15B
H16 H16
H16A H16A
H17 H17
H17A H17A
H17B H17B