PDB Chemical Component X17
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for X17
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C2 |
C1 |
1.506 |
1.507 |
| C1 |
H1 |
1.099 |
1.090 |
| C1 |
H1A |
1.100 |
1.090 |
| C1 |
H1B |
1.100 |
1.091 |
| C11 |
N1 |
1.361 |
1.373 |
| N1 |
C12 |
1.456 |
1.465 |
| N1 |
C10 |
1.364 |
1.350 |
| C8 |
O1 |
1.423 |
1.429 |
| C7 |
O1 |
1.375 |
1.359 |
| C7 |
C2 |
1.402 |
1.387 |
| C3 |
C2 |
1.405 |
1.381 |
| N2 |
C11 |
1.301 |
1.297 |
| N2 |
C9 |
1.500 |
1.472 |
| C10 |
O2 |
1.223 |
1.213 |
| C4 |
C3 |
1.405 |
1.382 |
| C3 |
H3 |
1.079 |
1.081 |
| N3 |
C11 |
1.365 |
1.374 |
| N3 |
HN3 |
1.000 |
0.970 |
| N3 |
HN3A |
1.000 |
0.970 |
| C5 |
C4 |
1.403 |
1.383 |
| C9 |
C4 |
1.539 |
1.508 |
| C5 |
C6 |
1.403 |
1.381 |
| C5 |
H5 |
1.080 |
1.080 |
| C6 |
C7 |
1.402 |
1.387 |
| C6 |
H6 |
1.080 |
1.081 |
| C8 |
H8 |
1.100 |
1.089 |
| C8 |
H8A |
1.100 |
1.091 |
| C8 |
H8B |
1.100 |
1.090 |
| C13 |
C9 |
1.590 |
1.531 |
| C9 |
C10 |
1.544 |
1.515 |
| C12 |
H12 |
1.100 |
1.090 |
| C12 |
H12A |
1.100 |
1.089 |
| C12 |
H12B |
1.100 |
1.090 |
| C22 |
C13 |
1.563 |
1.530 |
| C14 |
C13 |
1.564 |
1.530 |
| C13 |
C18 |
1.560 |
1.530 |
| C15 |
C14 |
1.537 |
1.530 |
| C14 |
H14 |
1.099 |
1.090 |
| C14 |
H14A |
1.100 |
1.091 |
| C21 |
C15 |
1.538 |
1.531 |
| C15 |
C16 |
1.536 |
1.530 |
| C15 |
H15 |
1.100 |
1.089 |
| C16 |
C17 |
1.534 |
1.529 |
| C16 |
H16 |
1.100 |
1.090 |
| C16 |
H16A |
1.100 |
1.090 |
| C19 |
C17 |
1.534 |
1.530 |
| C17 |
C18 |
1.542 |
1.530 |
| C17 |
H17 |
1.100 |
1.091 |
| C18 |
H18 |
1.100 |
1.089 |
| C18 |
H18A |
1.100 |
1.090 |
| C20 |
C19 |
1.535 |
1.530 |
| C19 |
H19 |
1.100 |
1.090 |
| C19 |
H19A |
1.100 |
1.090 |
| C21 |
C20 |
1.534 |
1.530 |
| C20 |
C22 |
1.542 |
1.530 |
| C20 |
H20 |
1.100 |
1.090 |
| C21 |
H21 |
1.100 |
1.090 |
| C21 |
H21A |
1.100 |
1.089 |
| C22 |
H22 |
1.100 |
1.091 |
| C22 |
H22A |
1.100 |
1.090 |
Bond Angles for X17
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
H1 |
109.5 |
109.5 |
| C2 |
C1 |
H1A |
109.5 |
109.5 |
| C2 |
C1 |
H1B |
109.5 |
109.4 |
| H1 |
C1 |
H1A |
109.4 |
109.5 |
| H1 |
C1 |
H1B |
109.5 |
109.5 |
| H1A |
C1 |
H1B |
109.5 |
109.4 |
| C11 |
N1 |
C12 |
127.1 |
124.7 |
| C10 |
N1 |
C12 |
123.6 |
124.7 |
| N1 |
C12 |
H12 |
109.5 |
109.4 |
| N1 |
C12 |
H12A |
109.5 |
109.4 |
| N1 |
C12 |
H12B |
109.5 |
109.4 |
| N1 |
C10 |
O2 |
126.3 |
127.4 |
| N1 |
C10 |
C9 |
107.0 |
105.1 |
| C9 |
N2 |
C11 |
108.1 |
107.5 |
| N2 |
C11 |
N3 |
123.2 |
123.6 |
| N2 |
C9 |
C4 |
110.2 |
110.5 |
| N2 |
C9 |
C10 |
101.1 |
103.9 |
| C4 |
C3 |
H3 |
119.0 |
120.0 |
| C11 |
N3 |
HN3 |
120.0 |
120.0 |
| C11 |
N3 |
HN3A |
120.0 |
120.0 |
| HN3 |
N3 |
HN3A |
120.0 |
120.0 |
| C6 |
C5 |
H5 |
119.4 |
120.0 |
| C5 |
C6 |
C7 |
120.5 |
119.9 |
| C5 |
C6 |
H6 |
119.8 |
120.0 |
| C7 |
C6 |
H6 |
119.8 |
120.1 |
| H8 |
C8 |
H8A |
109.5 |
109.5 |
| H8 |
C8 |
H8B |
109.5 |
109.5 |
| H8A |
C8 |
H8B |
109.5 |
109.5 |
| H12 |
C12 |
H12A |
109.4 |
109.5 |
| H12 |
C12 |
H12B |
109.5 |
109.5 |
| H12A |
C12 |
H12B |
109.5 |
109.5 |
| C14 |
C13 |
C18 |
107.4 |
109.5 |
| C13 |
C18 |
C17 |
111.4 |
109.4 |
| C13 |
C18 |
H18 |
108.8 |
109.5 |
| C13 |
C18 |
H18A |
108.8 |
109.5 |
| C15 |
C14 |
H14 |
108.8 |
109.5 |
| C15 |
C14 |
H14A |
108.7 |
109.5 |
| H14 |
C14 |
H14A |
110.2 |
109.4 |
| C21 |
C15 |
H15 |
109.2 |
109.5 |
| C16 |
C15 |
H15 |
109.2 |
109.5 |
| C15 |
C16 |
C17 |
109.8 |
109.5 |
| C15 |
C16 |
H16 |
109.4 |
109.4 |
| C15 |
C16 |
H16A |
109.4 |
109.5 |
| C17 |
C16 |
H16 |
109.4 |
109.5 |
| C17 |
C16 |
H16A |
109.4 |
109.5 |
| C16 |
C17 |
C18 |
108.9 |
109.5 |
| C16 |
C17 |
H17 |
109.8 |
109.5 |
| H16 |
C16 |
H16A |
109.5 |
109.4 |
| C19 |
C17 |
H17 |
109.2 |
109.5 |
| C18 |
C17 |
H17 |
109.9 |
109.5 |
| C17 |
C18 |
H18 |
108.9 |
109.5 |
| C17 |
C18 |
H18A |
108.8 |
109.4 |
| H18 |
C18 |
H18A |
110.1 |
109.5 |
| C20 |
C19 |
H19 |
109.2 |
109.5 |
| C20 |
C19 |
H19A |
109.2 |
109.5 |
| H19 |
C19 |
H19A |
109.8 |
109.4 |
| C21 |
C20 |
C22 |
109.7 |
109.5 |
| C21 |
C20 |
H20 |
109.3 |
109.5 |
| C22 |
C20 |
H20 |
109.6 |
109.5 |
| C20 |
C22 |
H22 |
108.8 |
109.5 |
| C20 |
C22 |
H22A |
108.8 |
109.5 |
| H21 |
C21 |
H21A |
109.5 |
109.5 |
| H22 |
C22 |
H22A |
110.1 |
109.4 |
Torsion Angles for X17
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H1 |
C1 |
C2 |
H1A |
240.0 |
239.9 |
| H1 |
C1 |
C2 |
H1B |
120.0 |
120.0 |
| H1A |
C1 |
C2 |
H1B |
240.0 |
240.1 |
| C2 |
C1 |
H1 |
H1A |
120.0 |
120.1 |
| C2 |
C1 |
H1 |
H1B |
240.0 |
240.0 |
| H1A |
C1 |
H1 |
H1B |
120.0 |
120.0 |
| C2 |
C1 |
H1A |
H1 |
240.0 |
239.9 |
| C2 |
C1 |
H1A |
H1B |
120.0 |
119.9 |
| H1 |
C1 |
H1A |
H1B |
240.0 |
240.0 |
| C2 |
C1 |
H1B |
H1 |
120.0 |
120.0 |
| C2 |
C1 |
H1B |
H1A |
240.0 |
240.0 |
| H1 |
C1 |
H1B |
H1A |
119.9 |
120.0 |
| C10 |
N1 |
C11 |
C12 |
179.6 |
179.7 |
| C11 |
N1 |
C12 |
H12 |
180.0 |
269.7 |
| C11 |
N1 |
C12 |
H12A |
300.0 |
29.6 |
| C11 |
N1 |
C12 |
H12B |
60.0 |
149.7 |
| C12 |
N1 |
C10 |
O2 |
359.8 |
360.0 |
| C12 |
N1 |
C10 |
C9 |
179.3 |
180.0 |
| H12 |
C12 |
N1 |
H12A |
240.0 |
240.0 |
| H12 |
C12 |
N1 |
H12B |
120.0 |
120.0 |
| H12A |
C12 |
N1 |
H12B |
240.0 |
240.0 |
| C11 |
N1 |
C10 |
C12 |
180.4 |
180.3 |
| C10 |
N1 |
C12 |
H12 |
0.5 |
90.0 |
| C10 |
N1 |
C12 |
H12A |
120.5 |
210.0 |
| C10 |
N1 |
C12 |
H12B |
240.5 |
330.1 |
| N2 |
C9 |
C10 |
N1 |
1.2 |
359.8 |
| C7 |
C2 |
C1 |
H1 |
90.0 |
269.7 |
| C7 |
C2 |
C1 |
H1A |
209.9 |
29.8 |
| C7 |
C2 |
C1 |
H1B |
329.9 |
149.7 |
| C3 |
C2 |
C1 |
H1 |
270.0 |
90.0 |
| C3 |
C2 |
C1 |
H1A |
30.0 |
210.1 |
| C3 |
C2 |
C1 |
H1B |
150.0 |
330.0 |
| N2 |
C11 |
N1 |
C12 |
179.6 |
180.0 |
| C11 |
N2 |
C9 |
C4 |
239.4 |
241.3 |
| C11 |
N2 |
C9 |
C10 |
358.3 |
360.0 |
| N2 |
C11 |
N3 |
HN3 |
0.0 |
360.0 |
| N2 |
C11 |
N3 |
HN3A |
180.0 |
180.1 |
| N1 |
C10 |
C9 |
N2 |
1.2 |
359.8 |
| C9 |
N2 |
C11 |
N3 |
169.3 |
180.0 |
| O2 |
C10 |
N1 |
C12 |
359.8 |
360.0 |
| N1 |
C10 |
O2 |
C9 |
179.3 |
180.0 |
| N2 |
C9 |
C10 |
O2 |
180.6 |
179.8 |
| N2 |
C9 |
C4 |
C3 |
149.1 |
155.5 |
| N3 |
C11 |
N1 |
C12 |
11.7 |
0.2 |
| HN3 |
N3 |
C11 |
HN3A |
180.0 |
179.9 |
| C11 |
N3 |
HN3 |
HN3A |
180.0 |
180.1 |
| C11 |
N3 |
HN3A |
HN3 |
180.0 |
179.9 |
| N2 |
C9 |
C4 |
C5 |
328.8 |
335.4 |
| C5 |
C4 |
C3 |
H3 |
180.1 |
180.1 |
| N1 |
C10 |
C9 |
C4 |
118.6 |
118.4 |
| C4 |
C9 |
N2 |
C11 |
239.4 |
241.3 |
| N2 |
C9 |
C4 |
C10 |
111.9 |
114.5 |
| C9 |
C4 |
C3 |
H3 |
359.8 |
360.0 |
| C7 |
C6 |
C5 |
H6 |
180.0 |
179.7 |
| H5 |
C5 |
C6 |
C7 |
180.1 |
179.8 |
| H5 |
C5 |
C6 |
H6 |
0.1 |
0.1 |
| C7 |
C6 |
C5 |
H5 |
180.1 |
179.8 |
| C5 |
C6 |
C7 |
H6 |
180.0 |
180.3 |
| H6 |
C6 |
C5 |
H5 |
0.1 |
0.1 |
| C5 |
C6 |
H6 |
C7 |
180.0 |
179.7 |
| H8A |
C8 |
H8 |
H8B |
120.0 |
120.0 |
| H8 |
C8 |
H8A |
H8B |
240.0 |
240.0 |
| H8 |
C8 |
H8B |
H8A |
120.0 |
120.0 |
| C9 |
C10 |
N1 |
C12 |
179.3 |
180.0 |
| N1 |
C10 |
C9 |
O2 |
180.6 |
180.0 |
| C10 |
C9 |
N2 |
C11 |
358.3 |
360.0 |
| N2 |
C9 |
C10 |
C4 |
242.6 |
241.4 |
| N1 |
C12 |
H12 |
H12A |
120.0 |
120.0 |
| N1 |
C12 |
H12 |
H12B |
240.0 |
240.1 |
| H12A |
C12 |
H12 |
H12B |
120.0 |
120.1 |
| N1 |
C12 |
H12A |
H12 |
240.0 |
240.1 |
| N1 |
C12 |
H12A |
H12B |
120.0 |
120.0 |
| H12 |
C12 |
H12A |
H12B |
240.0 |
239.9 |
| N1 |
C12 |
H12B |
H12 |
120.0 |
119.9 |
| N1 |
C12 |
H12B |
H12A |
240.0 |
240.0 |
| H12 |
C12 |
H12B |
H12A |
120.0 |
120.1 |
| C22 |
C13 |
C18 |
H18 |
62.5 |
60.0 |
| C22 |
C13 |
C18 |
H18A |
182.5 |
180.0 |
| C14 |
C13 |
C18 |
C17 |
57.5 |
60.0 |
| C14 |
C13 |
C18 |
H18 |
177.5 |
180.0 |
| C14 |
C13 |
C18 |
H18A |
297.5 |
300.1 |
| C16 |
C17 |
C18 |
C13 |
299.6 |
300.0 |
| C13 |
C18 |
C17 |
H17 |
179.3 |
180.0 |
| C17 |
C18 |
C13 |
H18 |
240.0 |
240.0 |
| C17 |
C18 |
C13 |
H18A |
120.0 |
120.0 |
| H18 |
C18 |
C13 |
H18A |
240.0 |
240.0 |
| C15 |
C14 |
C13 |
C18 |
302.8 |
300.0 |
| H14 |
C14 |
C15 |
H14A |
120.0 |
120.0 |
| H14 |
C14 |
C13 |
C18 |
62.7 |
60.0 |
| C15 |
C14 |
H14 |
H14A |
240.9 |
240.0 |
| H14A |
C14 |
C13 |
C18 |
182.8 |
180.0 |
| C15 |
C14 |
H14A |
H14 |
119.1 |
120.0 |
| C21 |
C15 |
C14 |
H14 |
179.4 |
180.0 |
| C21 |
C15 |
C14 |
H14A |
59.4 |
60.0 |
| C16 |
C15 |
C21 |
H15 |
119.8 |
120.0 |
| C21 |
C15 |
C16 |
H16 |
179.0 |
180.0 |
| C21 |
C15 |
C16 |
H16A |
298.9 |
299.9 |
| C16 |
C15 |
C14 |
H14 |
299.7 |
299.9 |
| C16 |
C15 |
C14 |
H14A |
179.7 |
180.0 |
| C21 |
C15 |
C16 |
H15 |
240.2 |
240.0 |
| C17 |
C16 |
C15 |
H16 |
240.0 |
240.0 |
| C17 |
C16 |
C15 |
H16A |
120.0 |
120.1 |
| C15 |
C16 |
C17 |
C18 |
61.0 |
60.0 |
| C15 |
C16 |
C17 |
H17 |
181.4 |
180.0 |
| H16 |
C16 |
C15 |
H16A |
240.0 |
240.1 |
| H15 |
C15 |
C14 |
H14 |
59.6 |
60.0 |
| H15 |
C15 |
C14 |
H14A |
299.6 |
300.0 |
| H15 |
C15 |
C16 |
C17 |
178.8 |
180.0 |
| H15 |
C15 |
C16 |
H16 |
298.8 |
300.0 |
| H15 |
C15 |
C16 |
H16A |
58.8 |
59.9 |
| C13 |
C18 |
C17 |
C16 |
299.6 |
300.0 |
| C17 |
C16 |
C15 |
H15 |
178.8 |
180.0 |
| C15 |
C16 |
C17 |
H16 |
120.0 |
120.0 |
| C15 |
C16 |
C17 |
H16A |
240.0 |
240.0 |
| H16 |
C16 |
C17 |
H16A |
120.0 |
120.0 |
| C19 |
C17 |
C16 |
H17 |
120.0 |
120.0 |
| C18 |
C17 |
C16 |
H17 |
239.6 |
240.0 |
| C16 |
C17 |
C18 |
H18 |
179.6 |
180.0 |
| C16 |
C17 |
C18 |
H18A |
59.6 |
60.0 |
| H16 |
C16 |
C15 |
H15 |
298.8 |
300.0 |
| C15 |
C16 |
H16 |
C17 |
239.7 |
240.0 |
| C15 |
C16 |
H16 |
H16A |
119.9 |
119.9 |
| C17 |
C16 |
H16 |
H16A |
240.1 |
239.9 |
| H16 |
C16 |
C17 |
C18 |
301.0 |
300.0 |
| H16 |
C16 |
C17 |
H17 |
61.4 |
60.0 |
| H16A |
C16 |
C15 |
H15 |
58.8 |
59.9 |
| C15 |
C16 |
H16A |
C17 |
120.3 |
120.1 |
| C15 |
C16 |
H16A |
H16 |
240.1 |
240.1 |
| C17 |
C16 |
H16A |
H16 |
119.9 |
120.0 |
| H16A |
C16 |
C17 |
C18 |
181.0 |
180.0 |
| H16A |
C16 |
C17 |
H17 |
301.4 |
300.0 |
| C19 |
C17 |
C16 |
H16 |
181.3 |
180.0 |
| C19 |
C17 |
C16 |
H16A |
61.4 |
60.0 |
| C16 |
C17 |
C19 |
H17 |
239.7 |
240.0 |
| C18 |
C17 |
C19 |
H17 |
120.4 |
120.0 |
| C19 |
C17 |
C18 |
H18 |
299.3 |
300.0 |
| C19 |
C17 |
C18 |
H18A |
179.3 |
180.0 |
| C13 |
C18 |
C17 |
H18 |
120.0 |
120.0 |
| C13 |
C18 |
C17 |
H18A |
240.0 |
240.0 |
| C18 |
C17 |
C16 |
H16 |
301.0 |
300.0 |
| C18 |
C17 |
C16 |
H16A |
181.0 |
180.0 |
| C16 |
C17 |
C18 |
H17 |
120.3 |
120.0 |
| C19 |
C17 |
C18 |
H17 |
240.0 |
240.0 |
| H18 |
C18 |
C17 |
H18A |
120.0 |
120.0 |
| H17 |
C17 |
C16 |
H16 |
61.4 |
60.0 |
| H17 |
C17 |
C16 |
H16A |
301.4 |
300.0 |
| C16 |
C17 |
H17 |
C18 |
240.2 |
240.0 |
| H17 |
C17 |
C18 |
H18 |
59.2 |
60.0 |
| H17 |
C17 |
C18 |
H18A |
299.3 |
300.0 |
| C13 |
C18 |
H18 |
C17 |
238.4 |
240.0 |
| C13 |
C18 |
H18 |
H18A |
119.2 |
120.0 |
| H18 |
C18 |
C17 |
H17 |
59.2 |
60.0 |
| C17 |
C18 |
H18 |
H18A |
240.8 |
240.0 |
| C13 |
C18 |
H18A |
C17 |
121.6 |
120.0 |
| C13 |
C18 |
H18A |
H18 |
240.8 |
240.0 |
| H18A |
C18 |
C17 |
H17 |
299.3 |
300.0 |
| C17 |
C18 |
H18A |
H18 |
119.2 |
120.0 |
| C20 |
C19 |
C17 |
H17 |
179.8 |
180.0 |
| H19 |
C19 |
C20 |
H19A |
120.0 |
119.9 |
| H19 |
C19 |
C17 |
H17 |
299.8 |
300.0 |
| C20 |
C19 |
H19 |
H19A |
240.3 |
240.1 |
| H19A |
C19 |
C17 |
H17 |
59.8 |
60.0 |
| C20 |
C19 |
H19A |
H19 |
119.7 |
120.0 |
| C20 |
C21 |
C15 |
H15 |
180.7 |
180.0 |
| C21 |
C20 |
C19 |
H19 |
180.2 |
179.9 |
| C21 |
C20 |
C19 |
H19A |
60.2 |
60.0 |
| C22 |
C20 |
C21 |
H20 |
120.2 |
120.0 |
| C21 |
C20 |
C22 |
H22 |
299.5 |
300.0 |
| C21 |
C20 |
C22 |
H22A |
179.5 |
180.1 |
| C22 |
C20 |
C19 |
H19 |
300.1 |
299.9 |
| C22 |
C20 |
C19 |
H19A |
180.0 |
180.0 |
| C21 |
C20 |
C22 |
H20 |
240.0 |
240.0 |
| H22 |
C22 |
C20 |
H22A |
120.0 |
120.0 |
| H20 |
C20 |
C19 |
H19 |
60.2 |
59.9 |
| H20 |
C20 |
C19 |
H19A |
300.2 |
300.0 |
| C21 |
C20 |
H20 |
C22 |
120.3 |
120.0 |
| H20 |
C20 |
C22 |
H22 |
59.6 |
60.0 |
| H20 |
C20 |
C22 |
H22A |
299.5 |
300.1 |
| H21 |
C21 |
C15 |
H15 |
300.8 |
300.0 |
| H21 |
C21 |
C20 |
C22 |
180.1 |
180.0 |
| H21 |
C21 |
C20 |
H20 |
59.9 |
60.0 |
| H21A |
C21 |
C15 |
H15 |
60.8 |
60.0 |
| H21A |
C21 |
C20 |
C22 |
60.1 |
60.0 |
| H21A |
C21 |
C20 |
H20 |
299.9 |
300.0 |
| H22 |
C22 |
C20 |
H20 |
59.6 |
60.0 |
| C20 |
C22 |
H22 |
H22A |
240.8 |
240.0 |
| H22A |
C22 |
C20 |
H20 |
299.5 |
300.1 |
| C20 |
C22 |
H22A |
H22 |
119.2 |
120.0 |