PDB Chemical Component X11
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for X11
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N1 |
C2 |
1.356 |
1.330 |
| N1 |
C6 |
1.353 |
1.330 |
| C2 |
N3 |
1.354 |
1.329 |
| C2 |
N7 |
1.406 |
1.380 |
| N3 |
C4 |
1.351 |
1.329 |
| C4 |
N5 |
1.347 |
1.329 |
| C4 |
N8 |
1.395 |
1.380 |
| N5 |
C6 |
1.349 |
1.331 |
| C6 |
C9 |
1.489 |
1.481 |
| C9 |
C10 |
1.435 |
1.399 |
| C9 |
C14 |
1.429 |
1.394 |
| C10 |
C11 |
1.418 |
1.386 |
| C10 |
O15 |
1.373 |
1.358 |
| C11 |
C12 |
1.426 |
1.381 |
| C12 |
C13 |
1.431 |
1.384 |
| C13 |
C14 |
1.419 |
1.379 |
| N7 |
HN7 |
1.001 |
0.970 |
| N7 |
HN7A |
1.000 |
0.970 |
| N8 |
HN8 |
1.000 |
0.970 |
| N8 |
HN8A |
0.999 |
0.970 |
| C11 |
H11 |
1.080 |
1.080 |
| C12 |
H12 |
1.080 |
1.080 |
| C13 |
H13 |
1.080 |
1.080 |
| C14 |
H14 |
1.080 |
1.080 |
| O15 |
HO15 |
0.950 |
0.967 |
Bond Angles for X11
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C6 |
119.8 |
120.0 |
| N1 |
C2 |
N3 |
120.1 |
120.0 |
| N1 |
C2 |
N7 |
119.8 |
120.0 |
| N1 |
C6 |
N5 |
119.7 |
120.0 |
| N1 |
C6 |
C9 |
120.4 |
120.1 |
| N3 |
C2 |
N7 |
120.1 |
120.0 |
| C2 |
N3 |
C4 |
119.8 |
120.1 |
| C2 |
N7 |
HN7 |
109.5 |
120.0 |
| C2 |
N7 |
HN7A |
109.5 |
120.0 |
| N3 |
C4 |
N5 |
120.0 |
120.0 |
| N3 |
C4 |
N8 |
120.6 |
120.0 |
| N5 |
C4 |
N8 |
119.5 |
120.0 |
| C4 |
N5 |
C6 |
120.6 |
120.0 |
| C4 |
N8 |
HN8 |
109.5 |
120.0 |
| C4 |
N8 |
HN8A |
109.5 |
120.0 |
| N5 |
C6 |
C9 |
119.9 |
120.0 |
| C6 |
C9 |
C10 |
120.3 |
120.2 |
| C6 |
C9 |
C14 |
119.9 |
120.2 |
| C10 |
C9 |
C14 |
119.9 |
119.6 |
| C9 |
C10 |
C11 |
119.8 |
119.8 |
| C9 |
C10 |
O15 |
120.5 |
120.1 |
| C9 |
C14 |
C13 |
120.3 |
120.0 |
| C9 |
C14 |
H14 |
119.9 |
120.0 |
| C11 |
C10 |
O15 |
119.7 |
120.2 |
| C10 |
C11 |
C12 |
120.2 |
120.0 |
| C10 |
C11 |
H11 |
119.9 |
119.9 |
| C10 |
O15 |
HO15 |
109.5 |
114.0 |
| C11 |
C12 |
C13 |
120.3 |
120.4 |
| C12 |
C11 |
H11 |
119.9 |
120.0 |
| C11 |
C12 |
H12 |
119.8 |
119.8 |
| C12 |
C13 |
C14 |
119.6 |
120.2 |
| C13 |
C12 |
H12 |
119.9 |
119.8 |
| C12 |
C13 |
H13 |
120.2 |
119.9 |
| C14 |
C13 |
H13 |
120.2 |
119.8 |
| C13 |
C14 |
H14 |
119.9 |
120.0 |
| HN7 |
N7 |
HN7A |
109.5 |
120.0 |
| HN8 |
N8 |
HN8A |
109.5 |
120.0 |
Torsion Angles for X11
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C6 |
N5 |
360.0 |
360.0 |
| C2 |
N1 |
C6 |
C9 |
180.2 |
179.9 |
| N3 |
C2 |
N1 |
N7 |
180.1 |
180.2 |
| N1 |
C2 |
N3 |
C4 |
359.9 |
359.9 |
| N1 |
C2 |
N7 |
HN7 |
0.0 |
0.1 |
| N1 |
C2 |
N7 |
HN7A |
120.0 |
180.0 |
| C6 |
N1 |
C2 |
N3 |
0.0 |
0.1 |
| C6 |
N1 |
C2 |
N7 |
179.9 |
179.9 |
| C4 |
N5 |
C6 |
N1 |
0.1 |
360.0 |
| N5 |
C6 |
N1 |
C9 |
179.8 |
180.0 |
| N1 |
C6 |
C9 |
C10 |
179.6 |
180.0 |
| N1 |
C6 |
C9 |
C14 |
359.9 |
359.7 |
| N3 |
C2 |
N1 |
C6 |
0.0 |
0.1 |
| N1 |
C2 |
N3 |
N7 |
179.9 |
179.8 |
| N3 |
C2 |
N7 |
HN7 |
179.9 |
180.0 |
| N3 |
C2 |
N7 |
HN7A |
299.9 |
359.9 |
| C2 |
N3 |
C4 |
N5 |
0.1 |
0.0 |
| C2 |
N3 |
C4 |
N8 |
179.9 |
180.1 |
| N7 |
C2 |
N1 |
C6 |
179.9 |
179.9 |
| N1 |
C2 |
N7 |
N3 |
180.1 |
180.2 |
| N7 |
C2 |
N3 |
C4 |
180.0 |
180.1 |
| HN7 |
N7 |
C2 |
HN7A |
240.0 |
180.1 |
| C4 |
N3 |
C2 |
N7 |
180.0 |
180.1 |
| N5 |
C4 |
N3 |
N8 |
180.2 |
180.0 |
| N3 |
C4 |
N5 |
C6 |
359.9 |
0.0 |
| N3 |
C4 |
N8 |
HN8 |
360.0 |
0.0 |
| N3 |
C4 |
N8 |
HN8A |
120.0 |
180.0 |
| N1 |
C6 |
N5 |
C4 |
0.1 |
360.0 |
| N3 |
C4 |
N5 |
N8 |
179.8 |
180.0 |
| N5 |
C4 |
N8 |
HN8 |
179.8 |
180.0 |
| N5 |
C4 |
N8 |
HN8A |
299.8 |
360.0 |
| C4 |
N5 |
C6 |
C9 |
179.9 |
180.0 |
| N3 |
C4 |
N8 |
N5 |
180.2 |
180.0 |
| N8 |
C4 |
N5 |
C6 |
180.1 |
180.0 |
| HN8 |
N8 |
C4 |
HN8A |
240.0 |
180.0 |
| N1 |
C6 |
N5 |
C9 |
180.2 |
180.0 |
| C6 |
N5 |
C4 |
N8 |
180.1 |
180.0 |
| N5 |
C6 |
C9 |
C10 |
359.8 |
0.0 |
| N5 |
C6 |
C9 |
C14 |
180.1 |
179.7 |
| N1 |
C6 |
C9 |
N5 |
179.8 |
180.0 |
| C10 |
C9 |
C6 |
C14 |
179.7 |
180.3 |
| C6 |
C9 |
C10 |
C11 |
180.6 |
180.0 |
| C6 |
C9 |
C10 |
O15 |
0.6 |
359.9 |
| C6 |
C9 |
C14 |
C13 |
179.6 |
179.7 |
| C6 |
C9 |
C14 |
H14 |
359.6 |
0.1 |
| C6 |
C9 |
C10 |
C14 |
180.3 |
179.7 |
| C10 |
C9 |
C14 |
C13 |
359.9 |
359.4 |
| C10 |
C9 |
C14 |
H14 |
179.9 |
179.7 |
| C11 |
C10 |
C9 |
O15 |
180.0 |
180.1 |
| C9 |
C10 |
C11 |
C12 |
359.8 |
359.9 |
| C9 |
C10 |
C11 |
H11 |
179.8 |
180.0 |
| C9 |
C10 |
O15 |
HO15 |
180.0 |
90.1 |
| C6 |
C9 |
C14 |
C10 |
179.7 |
180.3 |
| C14 |
C9 |
C10 |
C11 |
0.3 |
0.3 |
| C14 |
C9 |
C10 |
O15 |
180.3 |
180.3 |
| C12 |
C13 |
C14 |
C9 |
359.8 |
0.6 |
| C9 |
C14 |
C13 |
H13 |
179.8 |
180.3 |
| C13 |
C14 |
C9 |
H14 |
180.0 |
179.6 |
| C11 |
C10 |
C9 |
C14 |
0.3 |
0.3 |
| C9 |
C10 |
C11 |
O15 |
180.0 |
179.9 |
| C11 |
C10 |
O15 |
HO15 |
360.0 |
270.0 |
| C10 |
C11 |
C12 |
C13 |
359.9 |
0.0 |
| C12 |
C11 |
C10 |
H11 |
180.0 |
180.0 |
| C10 |
C11 |
C12 |
H12 |
179.9 |
180.0 |
| O15 |
C10 |
C9 |
C14 |
180.3 |
180.3 |
| C9 |
C10 |
O15 |
C11 |
180.0 |
180.1 |
| O15 |
C10 |
C11 |
C12 |
179.8 |
180.0 |
| O15 |
C10 |
C11 |
H11 |
359.8 |
0.0 |
| C12 |
C11 |
C10 |
O15 |
179.8 |
180.0 |
| C10 |
C11 |
C12 |
H11 |
180.0 |
180.0 |
| C11 |
C12 |
C13 |
C14 |
0.3 |
359.7 |
| C13 |
C12 |
C11 |
H12 |
180.0 |
180.1 |
| C11 |
C12 |
C13 |
H13 |
180.4 |
180.0 |
| C9 |
C14 |
C13 |
C12 |
359.8 |
0.6 |
| C13 |
C12 |
C11 |
H11 |
179.9 |
180.0 |
| C11 |
C12 |
C13 |
H12 |
180.0 |
179.9 |
| C14 |
C13 |
C12 |
H13 |
180.0 |
179.7 |
| C12 |
C13 |
C14 |
H14 |
179.8 |
180.3 |
| C9 |
C14 |
C13 |
H14 |
180.0 |
180.4 |
| C14 |
C13 |
C12 |
H12 |
180.3 |
179.7 |
| C12 |
C13 |
C14 |
H13 |
180.0 |
180.3 |
| C2 |
N7 |
HN7 |
HN7A |
120.0 |
179.9 |
| C2 |
N7 |
HN7A |
HN7 |
240.0 |
180.1 |
| C4 |
N8 |
HN8 |
HN8A |
120.0 |
180.0 |
| C4 |
N8 |
HN8A |
HN8 |
240.0 |
180.0 |
| H11 |
C11 |
C10 |
O15 |
359.8 |
0.0 |
| C10 |
C11 |
H11 |
C12 |
180.0 |
180.0 |
| H11 |
C11 |
C12 |
C13 |
179.9 |
180.0 |
| H11 |
C11 |
C12 |
H12 |
359.8 |
360.0 |
| C11 |
C12 |
H12 |
C13 |
180.0 |
180.1 |
| H12 |
C12 |
C11 |
H11 |
359.8 |
360.0 |
| H12 |
C12 |
C13 |
C14 |
180.3 |
179.7 |
| H12 |
C12 |
C13 |
H13 |
0.4 |
0.0 |
| C12 |
C13 |
H13 |
C14 |
180.0 |
179.7 |
| H13 |
C13 |
C12 |
H12 |
0.4 |
0.0 |
| H13 |
C13 |
C14 |
H14 |
359.8 |
360.0 |
| C9 |
C14 |
H14 |
C13 |
180.0 |
179.6 |
| H14 |
C14 |
C13 |
H13 |
359.8 |
360.0 |