PDB Chemical Component X07
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for X07
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C2 |
1.411 |
1.380 |
| C1 |
C6 |
1.458 |
1.390 |
| C1 |
H1 |
1.080 |
1.080 |
| C2 |
C3 |
1.434 |
1.386 |
| C2 |
H2 |
1.080 |
1.080 |
| C3 |
C4 |
1.426 |
1.377 |
| C3 |
N11 |
1.334 |
1.480 |
| C4 |
C5 |
1.443 |
1.397 |
| C4 |
H4 |
1.080 |
1.080 |
| C5 |
C6 |
1.468 |
1.403 |
| C5 |
C8 |
1.384 |
1.474 |
| C6 |
N7 |
1.342 |
1.389 |
| N7 |
C14 |
1.475 |
1.465 |
| N7 |
HN7 |
1.000 |
0.970 |
| C8 |
N9 |
1.364 |
1.348 |
| C8 |
O10 |
1.338 |
1.216 |
| N9 |
HN9 |
1.000 |
0.970 |
| N9 |
HN9A |
1.000 |
0.971 |
| N11 |
O12 |
1.351 |
1.218 |
| N11 |
O13 |
1.224 |
1.217 |
| C14 |
C18 |
1.510 |
1.507 |
| C14 |
H14 |
1.100 |
1.090 |
| C14 |
H14A |
1.100 |
1.090 |
| C15 |
N16 |
1.383 |
1.319 |
| C15 |
C20 |
1.417 |
1.382 |
| C15 |
H15 |
1.080 |
1.080 |
| N16 |
C17 |
1.386 |
1.319 |
| C17 |
C18 |
1.426 |
1.382 |
| C17 |
H17 |
1.080 |
1.080 |
| C18 |
C19 |
1.428 |
1.387 |
| C19 |
C20 |
1.418 |
1.386 |
| C19 |
H19 |
1.080 |
1.080 |
| C20 |
H20 |
1.080 |
1.080 |
Bond Angles for X07
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
C6 |
121.9 |
120.0 |
| C2 |
C1 |
H1 |
119.1 |
120.0 |
| C1 |
C2 |
C3 |
121.3 |
120.4 |
| C1 |
C2 |
H2 |
119.4 |
119.7 |
| C6 |
C1 |
H1 |
119.0 |
119.9 |
| C1 |
C6 |
C5 |
117.4 |
119.7 |
| C1 |
C6 |
N7 |
122.1 |
120.2 |
| C3 |
C2 |
H2 |
119.4 |
119.8 |
| C2 |
C3 |
C4 |
117.8 |
120.3 |
| C2 |
C3 |
N11 |
121.6 |
119.8 |
| C4 |
C3 |
N11 |
120.6 |
119.8 |
| C3 |
C4 |
C5 |
123.0 |
120.0 |
| C3 |
C4 |
H4 |
118.5 |
120.0 |
| C3 |
N11 |
O12 |
121.4 |
120.0 |
| C3 |
N11 |
O13 |
121.2 |
120.0 |
| C5 |
C4 |
H4 |
118.5 |
120.1 |
| C4 |
C5 |
C6 |
118.7 |
119.6 |
| C4 |
C5 |
C8 |
117.8 |
120.2 |
| C6 |
C5 |
C8 |
123.4 |
120.2 |
| C5 |
C6 |
N7 |
120.5 |
120.2 |
| C5 |
C8 |
N9 |
122.5 |
120.0 |
| C5 |
C8 |
O10 |
120.4 |
120.1 |
| C6 |
N7 |
C14 |
127.3 |
120.0 |
| C6 |
N7 |
HN7 |
103.9 |
120.0 |
| C14 |
N7 |
HN7 |
103.9 |
120.0 |
| N7 |
C14 |
C18 |
113.4 |
109.4 |
| N7 |
C14 |
H14 |
108.2 |
109.5 |
| N7 |
C14 |
H14A |
108.2 |
109.4 |
| N9 |
C8 |
O10 |
117.1 |
120.0 |
| C8 |
N9 |
HN9 |
120.0 |
120.0 |
| C8 |
N9 |
HN9A |
120.0 |
120.0 |
| HN9 |
N9 |
HN9A |
120.0 |
120.0 |
| O12 |
N11 |
O13 |
117.3 |
120.0 |
| C18 |
C14 |
H14 |
108.2 |
109.5 |
| C18 |
C14 |
H14A |
108.2 |
109.5 |
| C14 |
C18 |
C17 |
121.1 |
120.4 |
| C14 |
C18 |
C19 |
120.5 |
120.4 |
| H14 |
C14 |
H14A |
110.7 |
109.5 |
| N16 |
C15 |
C20 |
119.8 |
120.8 |
| N16 |
C15 |
H15 |
120.1 |
119.5 |
| C15 |
N16 |
C17 |
122.6 |
121.7 |
| C20 |
C15 |
H15 |
120.1 |
119.7 |
| C15 |
C20 |
C19 |
118.9 |
119.2 |
| C15 |
C20 |
H20 |
120.5 |
120.4 |
| N16 |
C17 |
C18 |
119.5 |
120.7 |
| N16 |
C17 |
H17 |
120.2 |
119.6 |
| C18 |
C17 |
H17 |
120.2 |
119.6 |
| C17 |
C18 |
C19 |
118.4 |
119.2 |
| C18 |
C19 |
C20 |
120.8 |
118.4 |
| C18 |
C19 |
H19 |
119.6 |
120.8 |
| C20 |
C19 |
H19 |
119.6 |
120.8 |
| C19 |
C20 |
H20 |
120.5 |
120.4 |
Torsion Angles for X07
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
C1 |
C2 |
H1 |
180.0 |
180.2 |
| C2 |
C1 |
C6 |
C5 |
359.9 |
0.0 |
| C2 |
C1 |
C6 |
N7 |
178.5 |
180.0 |
| C3 |
C2 |
C1 |
H2 |
180.0 |
180.0 |
| C1 |
C2 |
C3 |
C4 |
0.1 |
0.1 |
| C1 |
C2 |
C3 |
N11 |
180.0 |
180.0 |
| C2 |
C1 |
C6 |
H1 |
180.0 |
179.8 |
| C6 |
C1 |
C2 |
C3 |
0.1 |
359.9 |
| C6 |
C1 |
C2 |
H2 |
180.1 |
180.0 |
| C4 |
C5 |
C6 |
C1 |
359.9 |
360.0 |
| C1 |
C6 |
C5 |
C8 |
176.0 |
180.0 |
| C5 |
C6 |
C1 |
N7 |
181.5 |
180.0 |
| C1 |
C6 |
N7 |
C14 |
0.1 |
5.6 |
| C1 |
C6 |
N7 |
HN7 |
120.1 |
185.6 |
| C2 |
C1 |
H1 |
C6 |
180.0 |
180.2 |
| H1 |
C1 |
C2 |
C3 |
180.1 |
179.7 |
| H1 |
C1 |
C2 |
H2 |
0.1 |
359.8 |
| H1 |
C1 |
C6 |
C5 |
180.0 |
180.2 |
| H1 |
C1 |
C6 |
N7 |
358.5 |
0.2 |
| C3 |
C2 |
C1 |
C6 |
0.1 |
359.9 |
| C3 |
C2 |
C1 |
H1 |
180.1 |
179.7 |
| C1 |
C2 |
C3 |
H2 |
180.0 |
180.0 |
| C4 |
C3 |
C2 |
N11 |
180.0 |
180.1 |
| C2 |
C3 |
C4 |
C5 |
359.8 |
360.0 |
| C2 |
C3 |
C4 |
H4 |
179.8 |
179.9 |
| C2 |
C3 |
N11 |
O12 |
180.1 |
0.0 |
| C2 |
C3 |
N11 |
O13 |
0.0 |
180.0 |
| H2 |
C2 |
C1 |
C6 |
180.1 |
180.0 |
| H2 |
C2 |
C1 |
H1 |
0.1 |
359.8 |
| C1 |
C2 |
H2 |
C3 |
180.0 |
180.0 |
| H2 |
C2 |
C3 |
C4 |
180.1 |
180.0 |
| H2 |
C2 |
C3 |
N11 |
0.0 |
360.0 |
| C4 |
C3 |
C2 |
H2 |
180.1 |
180.0 |
| C2 |
C3 |
C4 |
N11 |
180.0 |
179.9 |
| C4 |
C3 |
N11 |
O12 |
0.0 |
180.0 |
| C4 |
C3 |
N11 |
O13 |
180.0 |
360.0 |
| C5 |
C4 |
C3 |
H4 |
180.0 |
180.0 |
| C3 |
C4 |
C5 |
C6 |
0.2 |
0.0 |
| C3 |
C4 |
C5 |
C8 |
183.9 |
180.0 |
| N11 |
C3 |
C2 |
H2 |
0.0 |
360.0 |
| C2 |
C3 |
N11 |
C4 |
180.0 |
180.1 |
| N11 |
C3 |
C4 |
C5 |
179.8 |
180.0 |
| N11 |
C3 |
C4 |
H4 |
359.8 |
360.0 |
| O12 |
N11 |
C3 |
O13 |
180.0 |
180.0 |
| C1 |
C6 |
C5 |
C4 |
359.9 |
360.0 |
| C5 |
C4 |
C3 |
N11 |
179.8 |
180.0 |
| C3 |
C4 |
C5 |
H4 |
180.0 |
180.0 |
| C6 |
C5 |
C4 |
C8 |
176.4 |
180.0 |
| C4 |
C5 |
C6 |
N7 |
181.3 |
180.0 |
| C4 |
C5 |
C8 |
N9 |
29.3 |
354.1 |
| C4 |
C5 |
C8 |
O10 |
208.8 |
174.1 |
| H4 |
C4 |
C3 |
N11 |
359.8 |
360.0 |
| C3 |
C4 |
H4 |
C5 |
180.0 |
180.0 |
| H4 |
C4 |
C5 |
C6 |
180.3 |
180.1 |
| H4 |
C4 |
C5 |
C8 |
3.9 |
0.0 |
| C5 |
C6 |
C1 |
H1 |
180.0 |
180.2 |
| C1 |
C6 |
C5 |
N7 |
178.6 |
180.0 |
| C6 |
C5 |
C4 |
H4 |
180.3 |
180.1 |
| C4 |
C5 |
C6 |
C8 |
183.9 |
180.0 |
| C6 |
C5 |
C8 |
N9 |
213.1 |
174.1 |
| C6 |
C5 |
C8 |
O10 |
32.6 |
354.1 |
| C5 |
C6 |
N7 |
C14 |
178.6 |
185.5 |
| C5 |
C6 |
N7 |
HN7 |
298.6 |
5.6 |
| C8 |
C5 |
C4 |
H4 |
3.9 |
0.0 |
| C4 |
C5 |
C8 |
C6 |
176.2 |
180.0 |
| C8 |
C5 |
C6 |
N7 |
357.5 |
0.1 |
| N9 |
C8 |
C5 |
O10 |
180.5 |
180.0 |
| C5 |
C8 |
N9 |
HN9 |
179.5 |
360.0 |
| C5 |
C8 |
N9 |
HN9A |
359.5 |
180.1 |
| N7 |
C6 |
C1 |
H1 |
358.5 |
0.2 |
| C1 |
C6 |
N7 |
C5 |
181.5 |
180.0 |
| N7 |
C6 |
C5 |
C8 |
357.5 |
0.1 |
| C14 |
N7 |
C6 |
HN7 |
240.0 |
180.0 |
| C6 |
N7 |
C14 |
C18 |
79.0 |
180.0 |
| C6 |
N7 |
C14 |
H14 |
199.0 |
300.0 |
| C6 |
N7 |
C14 |
H14A |
319.0 |
60.0 |
| C6 |
N7 |
C14 |
HN7 |
120.0 |
180.0 |
| C18 |
C14 |
N7 |
H14 |
240.0 |
240.0 |
| C18 |
C14 |
N7 |
H14A |
120.0 |
120.0 |
| N7 |
C14 |
C18 |
C17 |
56.0 |
90.0 |
| N7 |
C14 |
C18 |
C19 |
236.1 |
270.0 |
| H14 |
C14 |
N7 |
H14A |
240.0 |
240.0 |
| C6 |
N7 |
HN7 |
C14 |
225.2 |
180.0 |
| HN7 |
N7 |
C14 |
C18 |
319.0 |
360.0 |
| HN7 |
N7 |
C14 |
H14 |
79.0 |
120.0 |
| HN7 |
N7 |
C14 |
H14A |
199.0 |
240.0 |
| C5 |
C8 |
N9 |
O10 |
179.5 |
180.0 |
| HN9 |
N9 |
C8 |
HN9A |
180.0 |
179.9 |
| C5 |
C8 |
O10 |
N9 |
180.5 |
180.0 |
| O10 |
C8 |
N9 |
HN9 |
360.0 |
180.0 |
| O10 |
C8 |
N9 |
HN9A |
180.0 |
0.1 |
| HN9 |
N9 |
C8 |
O10 |
360.0 |
180.0 |
| C8 |
N9 |
HN9 |
HN9A |
180.0 |
180.1 |
| HN9A |
N9 |
C8 |
O10 |
180.0 |
0.1 |
| C8 |
N9 |
HN9A |
HN9 |
180.0 |
179.9 |
| C3 |
N11 |
O12 |
O13 |
180.0 |
180.0 |
| C3 |
N11 |
O13 |
O12 |
180.0 |
180.0 |
| C18 |
C14 |
N7 |
HN7 |
319.0 |
360.0 |
| N7 |
C14 |
C18 |
H14 |
120.0 |
120.0 |
| N7 |
C14 |
C18 |
H14A |
240.0 |
240.0 |
| H14 |
C14 |
C18 |
H14A |
120.0 |
120.0 |
| N16 |
C17 |
C18 |
C14 |
180.0 |
180.0 |
| C14 |
C18 |
C17 |
H17 |
0.0 |
359.9 |
| C17 |
C18 |
C14 |
C19 |
180.0 |
180.0 |
| C14 |
C18 |
C19 |
C20 |
180.0 |
180.0 |
| C14 |
C18 |
C19 |
H19 |
359.9 |
0.0 |
| H14 |
C14 |
N7 |
HN7 |
79.0 |
120.0 |
| N7 |
C14 |
H14 |
C18 |
236.8 |
240.0 |
| N7 |
C14 |
H14 |
H14A |
118.4 |
120.0 |
| C18 |
C14 |
H14 |
H14A |
241.6 |
239.9 |
| H14 |
C14 |
C18 |
C17 |
296.0 |
330.0 |
| H14 |
C14 |
C18 |
C19 |
116.1 |
150.0 |
| H14A |
C14 |
N7 |
HN7 |
199.0 |
240.0 |
| N7 |
C14 |
H14A |
C18 |
123.2 |
120.0 |
| N7 |
C14 |
H14A |
H14 |
241.6 |
240.0 |
| C18 |
C14 |
H14A |
H14 |
118.4 |
120.0 |
| H14A |
C14 |
C18 |
C17 |
176.0 |
210.0 |
| H14A |
C14 |
C18 |
C19 |
356.1 |
30.0 |
| C20 |
C15 |
N16 |
H15 |
180.0 |
180.3 |
| N16 |
C15 |
C20 |
C19 |
0.0 |
360.0 |
| N16 |
C15 |
C20 |
H20 |
180.0 |
179.9 |
| C15 |
N16 |
C17 |
C18 |
0.1 |
359.9 |
| C15 |
N16 |
C17 |
H17 |
180.1 |
180.0 |
| N16 |
C15 |
C20 |
H15 |
180.0 |
179.7 |
| C20 |
C15 |
N16 |
C17 |
360.0 |
0.1 |
| C18 |
C19 |
C20 |
C15 |
0.0 |
360.0 |
| C15 |
C20 |
C19 |
H19 |
180.0 |
180.0 |
| C19 |
C20 |
C15 |
H20 |
180.0 |
180.0 |
| N16 |
C15 |
H15 |
C20 |
180.0 |
180.3 |
| H15 |
C15 |
N16 |
C17 |
180.0 |
179.8 |
| H15 |
C15 |
C20 |
C19 |
180.0 |
180.3 |
| H15 |
C15 |
C20 |
H20 |
0.0 |
0.2 |
| C14 |
C18 |
C17 |
N16 |
180.0 |
180.0 |
| C17 |
N16 |
C15 |
C20 |
360.0 |
0.1 |
| C17 |
N16 |
C15 |
H15 |
180.0 |
179.8 |
| C18 |
C17 |
N16 |
H17 |
180.0 |
179.9 |
| N16 |
C17 |
C18 |
C19 |
360.0 |
0.0 |
| C17 |
C18 |
C14 |
H14 |
296.0 |
330.0 |
| C17 |
C18 |
C14 |
H14A |
176.0 |
210.0 |
| C14 |
C18 |
C17 |
C19 |
180.0 |
180.0 |
| N16 |
C17 |
C18 |
H17 |
180.0 |
180.1 |
| C17 |
C18 |
C19 |
C20 |
360.0 |
0.0 |
| C17 |
C18 |
C19 |
H19 |
180.0 |
180.0 |
| N16 |
C17 |
H17 |
C18 |
180.0 |
179.9 |
| H17 |
C17 |
C18 |
C19 |
180.0 |
180.0 |
| C19 |
C18 |
C14 |
H14 |
116.1 |
150.0 |
| C19 |
C18 |
C14 |
H14A |
356.1 |
30.0 |
| C14 |
C18 |
C19 |
C17 |
180.0 |
180.0 |
| C15 |
C20 |
C19 |
C18 |
0.0 |
360.0 |
| C19 |
C18 |
C17 |
H17 |
180.0 |
180.0 |
| C20 |
C19 |
C18 |
H19 |
180.0 |
180.0 |
| C18 |
C19 |
C20 |
H20 |
180.0 |
180.0 |
| C19 |
C20 |
C15 |
H15 |
180.0 |
180.3 |
| C15 |
C20 |
C19 |
H20 |
180.0 |
180.0 |
| C18 |
C19 |
C20 |
H19 |
180.0 |
180.0 |
| C18 |
C19 |
H19 |
C20 |
180.0 |
180.0 |
| H19 |
C19 |
C20 |
H20 |
0.0 |
0.1 |
| H20 |
C20 |
C15 |
H15 |
0.0 |
0.2 |
| C15 |
C20 |
H20 |
C19 |
180.0 |
180.0 |
| H20 |
C20 |
C19 |
H19 |
0.0 |
0.1 |