PDB Chemical Component X03

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for X03

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
N1	N2	1.425	1.289
N1	C5	1.343	1.322
N2	C3	1.375	1.343
C3	C4	1.379	1.356
C3	C10	1.554	1.508
C4	C5	1.479	1.406
C4	C13	1.545	1.503
C5	C6	1.481	1.477
C6	N7	1.349	1.347
C6	O9	1.243	1.216
N7	N8	1.435	1.367
C10	C11	1.602	1.534
C11	C12	1.620	1.531
C12	C13	1.604	1.534
C12	C14	1.660	1.530
C14	C15	1.619	1.529
C14	C17	1.578	1.530
C14	C18	1.562	1.531
C15	C16	1.482	1.530
N2	HN2	1.000	0.970
N7	HN7	1.000	0.970
N8	HN8	1.000	1.009
N8	HN8A	1.000	1.009
C10	H10	1.100	1.090
C10	H10A	1.100	1.090
C11	H11	1.100	1.089
C11	H11A	1.100	1.091
C12	H12	1.100	1.091
C13	H13	1.100	1.090
C13	H13A	1.100	1.091
C15	H15	1.100	1.090
C15	H15A	1.100	1.091
C16	H16	1.100	1.091
C16	H16A	1.100	1.090
C16	H16B	1.100	1.089
C17	H17	1.100	1.089
C17	H17A	1.100	1.090
C17	H17B	1.100	1.089
C18	H18	1.101	1.089
C18	H18A	1.100	1.091
C18	H18B	1.100	1.090

Bond Angles for X03

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
N2	N1	C5	109.5	110.1
N1	N2	C3	108.0	110.0
N1	N2	HN2	126.0	124.9
N1	C5	C4	106.6	106.7
N1	C5	C6	126.5	126.7
N2	C3	C4	109.0	107.3
N2	C3	C10	128.3	128.8
C3	N2	HN2	126.0	125.1
C4	C3	C10	122.7	123.9
C3	C4	C5	106.9	105.9
C3	C4	C13	122.7	124.6
C3	C10	C11	114.8	108.3
C3	C10	H10	107.7	109.6
C3	C10	H10A	107.7	109.7
C5	C4	C13	130.3	129.5
C4	C5	C6	126.8	126.6
C4	C13	C12	114.7	108.3
C4	C13	H13	107.7	109.7
C4	C13	H13A	107.8	109.7
C5	C6	N7	119.7	120.0
C5	C6	O9	120.3	120.0
N7	C6	O9	120.0	120.0
C6	N7	N8	121.5	120.0
C6	N7	HN7	119.2	120.0
N8	N7	HN7	119.2	120.0
N7	N8	HN8	109.5	111.0
N7	N8	HN8A	109.5	111.0
C10	C11	C12	115.2	109.7
C11	C10	H10	107.7	109.7
C11	C10	H10A	107.7	109.7
C10	C11	H11	107.6	109.5
C10	C11	H11A	107.6	109.4
C11	C12	C13	106.5	109.5
C11	C12	C14	117.1	109.5
C12	C11	H11	107.6	109.5
C12	C11	H11A	107.6	109.4
C11	C12	H12	107.3	109.4
C13	C12	C14	112.0	109.5
C13	C12	H12	112.9	109.4
C12	C13	H13	107.8	109.7
C12	C13	H13A	107.7	109.8
C12	C14	C15	110.0	109.5
C12	C14	C17	110.5	109.5
C12	C14	C18	112.3	109.4
C14	C12	H12	101.1	109.5
C15	C14	C17	110.1	109.5
C15	C14	C18	107.3	109.4
C14	C15	C16	106.4	109.5
C14	C15	H15	110.5	109.5
C14	C15	H15A	110.5	109.4
C17	C14	C18	106.6	109.5
C14	C17	H17	109.5	109.5
C14	C17	H17A	109.5	109.4
C14	C17	H17B	109.5	109.4
C14	C18	H18	109.5	109.5
C14	C18	H18A	109.5	109.4
C14	C18	H18B	109.5	109.5
C16	C15	H15	110.5	109.5
C16	C15	H15A	110.5	109.4
C15	C16	H16	109.5	109.5
C15	C16	H16A	109.5	109.5
C15	C16	H16B	109.5	109.5
HN8	N8	HN8A	109.5	111.1
H10	C10	H10A	111.1	109.7
H11	C11	H11A	111.2	109.4
H13	C13	H13A	111.1	109.7
H15	C15	H15A	108.4	109.4
H16	C16	H16A	109.5	109.4
H16	C16	H16B	109.5	109.5
H16A	C16	H16B	109.5	109.4
H17	C17	H17A	109.5	109.5
H17	C17	H17B	109.5	109.5
H17A	C17	H17B	109.4	109.4
H18	C18	H18A	109.5	109.5
H18	C18	H18B	109.4	109.5
H18A	C18	H18B	109.5	109.4

Torsion Angles for X03

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
N2	N1	C5	C4	0.5	360.0
N2	N1	C5	C6	180.4	179.9
N1	N2	C3	C4	0.4	0.1
N1	N2	C3	C10	180.6	180.3
C3	N2	N1	HN2	180.0	180.1
C5	N1	N2	C3	359.4	360.0
C5	N1	N2	HN2	179.4	179.9
C3	C4	C5	N1	359.8	0.1
N1	C5	C4	C13	179.5	180.2
C4	C5	N1	C6	180.1	180.0
N1	C5	C6	N7	358.9	0.0
N1	C5	C6	O9	179.0	180.1
C3	N2	N1	C5	359.4	360.0
N1	N2	C3	HN2	180.0	179.9
C4	C3	N2	C10	179.9	179.8
N2	C3	C4	C5	359.8	359.9
N2	C3	C4	C13	180.1	179.8
N2	C3	C10	C11	178.4	163.2
N2	C3	C10	H10	298.4	282.9
N2	C3	C10	H10A	58.3	43.5
N1	C5	C4	C3	359.8	0.1
N2	C3	C4	C10	180.1	180.2
C4	C3	N2	HN2	180.5	180.2
C4	C3	C10	C11	358.5	343.5
C4	C3	C10	H10	118.5	103.1
C4	C3	C10	H10A	238.5	223.7
C5	C4	C3	C13	179.7	180.1
C3	C4	C5	C6	179.9	180.1
C3	C4	C13	C12	333.4	343.8
C3	C4	C13	H13	93.4	103.5
C3	C4	C13	H13A	213.4	224.1
N2	C3	C10	C4	179.8	179.8
C10	C3	N2	HN2	0.6	0.3
C10	C3	C4	C5	179.7	179.7
C10	C3	C4	C13	360.0	359.7
C3	C10	C11	C12	29.5	49.9
C11	C10	C3	H10	240.0	240.3
C11	C10	C3	H10A	120.0	119.8
C3	C10	C11	H11	149.5	170.1
C3	C10	C11	H11A	269.5	289.9
H10	C10	C3	H10A	240.0	239.5
N1	C5	C4	C6	179.9	180.0
C5	C4	C3	C10	179.7	179.7
C3	C4	C5	C13	180.3	179.9
C5	C4	C13	C12	153.7	163.7
C5	C4	C13	H13	273.8	283.4
C5	C4	C13	H13A	33.8	44.0
C4	C5	C6	N7	178.8	179.9
C4	C5	C6	O9	358.9	0.0
C13	C4	C3	C10	360.0	359.7
C3	C4	C13	C5	179.7	180.1
C13	C4	C5	C6	359.6	0.2
C11	C12	C13	C4	50.1	49.4
C4	C13	C12	C14	179.3	169.5
C4	C13	C12	H12	292.6	289.5
C12	C13	C4	H13	240.0	240.3
C12	C13	C4	H13A	120.0	119.8
H13	C13	C4	H13A	240.0	239.4
N1	C5	C6	C4	180.1	180.1
C6	C5	C4	C13	359.6	0.2
N7	C6	C5	O9	179.9	179.9
C5	C6	N7	N8	180.2	180.0
C5	C6	N7	HN7	0.2	0.1
C5	C6	N7	O9	180.1	180.1
N8	N7	C6	HN7	180.0	179.9
C6	N7	N8	HN8	180.0	180.0
C6	N7	N8	HN8A	300.0	304.0
C5	C6	O9	N7	179.9	179.9
O9	C6	N7	N8	0.1	359.9
O9	C6	N7	HN7	180.1	180.0
N8	N7	C6	O9	0.1	359.9
C6	N7	N8	HN7	180.0	180.1
HN8	N8	N7	HN8A	240.0	236.0
C3	C10	C11	H10	120.0	119.6
C3	C10	C11	H10A	240.0	240.2
C10	C11	C12	C13	307.9	290.0
C10	C11	C12	C14	181.7	169.9
C12	C11	C10	H11	240.0	239.9
C12	C11	C10	H11A	120.0	120.0
C10	C11	C12	H12	69.0	50.0
H10	C10	C11	H10A	120.0	120.6
H11	C11	C10	H11A	240.0	240.1
C4	C13	C12	C11	50.1	49.4
C12	C11	C10	H10	269.5	290.3
C12	C11	C10	H10A	149.5	169.7
C10	C11	C12	H11	120.0	120.1
C10	C11	C12	H11A	240.0	240.0
C13	C12	C11	C14	126.2	120.1
C13	C12	C11	H12	238.9	240.0
C11	C12	C13	H13	290.1	289.8
C11	C12	C13	H13A	170.1	169.1
C11	C12	C14	C15	243.8	300.0
C11	C12	C14	C17	122.1	60.1
C11	C12	C14	C18	3.2	180.0
C14	C12	C11	H12	112.7	120.0
H11	C11	C12	H11A	120.0	119.8
C4	C13	C12	H13	120.0	119.7
C4	C13	C12	H13A	240.0	240.3
C11	C12	C13	C14	230.8	239.9
C13	C12	C11	H11	187.9	169.9
C13	C12	C11	H11A	68.0	50.0
C11	C12	C13	H12	117.4	119.9
C13	C12	C14	C15	120.4	179.9
C13	C12	C14	C17	358.7	300.0
C13	C12	C14	C18	239.8	59.9
C14	C12	C13	H12	246.7	240.0
H13	C13	C12	H13A	120.0	120.6
C11	C12	C14	C13	123.4	120.1
C14	C12	C11	H11	61.7	49.8
C14	C12	C11	H11A	301.8	290.0
C11	C12	C14	H12	243.9	240.1
C13	C12	C14	H12	120.4	120.0
C14	C12	C13	H13	59.3	49.8
C14	C12	C13	H13A	299.3	289.2
C15	C14	C12	C17	121.8	239.9
C15	C14	C12	C18	240.6	120.0
C12	C14	C15	C16	58.2	180.0
C12	C14	C15	H15	178.2	300.1
C12	C14	C15	H15A	298.2	60.0
C17	C14	C12	C18	118.9	240.0
C12	C14	C17	H17	180.0	60.0
C12	C14	C17	H17A	300.0	180.0
C12	C14	C17	H17B	60.0	300.0
C12	C14	C18	H18	180.0	60.0
C12	C14	C18	H18A	300.0	180.0
C12	C14	C18	H18B	60.0	300.0
C12	C14	C15	C17	238.0	120.0
C12	C14	C15	C18	122.4	240.0
C15	C14	C12	H12	360.0	59.9
C17	C14	C15	C18	244.4	120.0
C15	C14	C17	H17	58.3	180.0
C15	C14	C17	H17A	178.3	300.1
C15	C14	C17	H17B	298.3	60.0
C15	C14	C18	H18	300.9	300.0
C15	C14	C18	H18A	60.9	60.0
C15	C14	C18	H18B	180.9	180.0
C16	C15	C14	H15	240.0	239.9
C16	C15	C14	H15A	120.0	119.9
C14	C15	C16	H16	180.0	60.1
C14	C15	C16	H16A	300.0	180.0
C14	C15	C16	H16B	60.0	300.0
H15	C15	C14	H15A	240.0	240.0
C12	C14	C17	C15	121.7	239.9
C12	C14	C17	C18	237.7	120.0
C17	C14	C12	H12	238.2	180.0
C15	C14	C17	C18	116.0	240.0
C17	C14	C15	C16	180.2	59.9
C17	C14	C15	H15	300.2	180.0
C17	C14	C15	H15A	60.2	300.0
C17	C14	C18	H18	58.8	180.0
C17	C14	C18	H18A	178.8	300.0
C17	C14	C18	H18B	298.8	59.9
H17	C17	C14	H17A	240.0	240.0
H17	C17	C14	H17B	120.0	120.0
H17A	C17	C14	H17B	240.0	240.1
C12	C14	C18	C15	239.1	120.0
C12	C14	C18	C17	121.2	240.0
C18	C14	C12	H12	119.3	300.0
C15	C14	C18	C17	242.1	120.0
C18	C14	C15	C16	295.8	299.9
C18	C14	C15	H15	55.8	60.0
C18	C14	C15	H15A	175.8	180.0
C18	C14	C17	H17	302.3	300.0
C18	C14	C17	H17A	62.3	60.1
C18	C14	C17	H17B	182.3	180.0
H18	C18	C14	H18A	240.0	240.0
H18	C18	C14	H18B	120.0	120.1
H18A	C18	C14	H18B	240.0	240.1
C16	C15	C14	C17	180.2	59.9
C16	C15	C14	C18	295.8	299.9
C14	C15	C16	H15	120.0	120.1
C14	C15	C16	H15A	240.0	240.1
H15	C15	C16	H15A	120.0	120.0
H16	C16	C15	H16A	240.0	240.1
H16	C16	C15	H16B	120.0	120.1
H16A	C16	C15	H16B	240.0	240.0
HN2	N2	N1	C5	179.4	179.9
N1	N2	HN2	C3	180.0	180.1
HN2	N2	C3	C4	180.5	180.2
HN2	N2	C3	C10	0.6	0.3
HN7	N7	C6	O9	180.1	180.0
C6	N7	HN7	N8	180.0	179.9
HN7	N7	N8	HN8	0.0	359.9
HN7	N7	N8	HN8A	120.0	123.9
HN8	N8	N7	HN7	0.0	359.9
N7	N8	HN8	HN8A	120.0	124.0
HN8A	N8	N7	HN7	120.0	123.9
N7	N8	HN8A	HN8	240.0	236.0
C3	C10	H10	C11	235.6	241.2
C3	C10	H10	H10A	117.8	120.6
H10	C10	C11	C12	269.5	290.3
C11	C10	H10	H10A	242.2	239.4
H10	C10	C11	H11	29.5	50.4
H10	C10	C11	H11A	149.5	170.3
C3	C10	H10A	C11	124.4	118.9
C3	C10	H10A	H10	242.2	239.5
H10A	C10	C11	C12	149.5	169.7
C11	C10	H10A	H10	117.8	120.6
H10A	C10	C11	H11	269.5	289.8
H10A	C10	C11	H11A	29.5	49.7
C10	C11	H11	C12	235.3	239.7
H11	C11	C10	H10	29.5	50.4
H11	C11	C10	H10A	269.5	289.8
C10	C11	H11	H11A	117.7	119.9
H11	C11	C12	C13	187.9	169.9
H11	C11	C12	C14	61.7	49.8
C12	C11	H11	H11A	242.4	240.2
H11	C11	C12	H12	309.0	289.8
C10	C11	H11A	C12	124.7	120.2
H11A	C11	C10	H10	149.5	170.3
H11A	C11	C10	H10A	29.5	49.7
C10	C11	H11A	H11	242.3	240.1
H11A	C11	C12	C13	68.0	50.0
H11A	C11	C12	C14	301.8	290.0
C12	C11	H11A	H11	117.6	119.9
H11A	C11	C12	H12	189.1	170.0
C11	C12	H12	C13	243.0	240.0
C11	C12	H12	C14	123.2	120.0
H12	C12	C11	H11	309.0	289.8
H12	C12	C11	H11A	189.1	170.0
C13	C12	H12	C14	240.2	240.0
H12	C12	C13	H13	172.7	169.8
H12	C12	C13	H13A	52.7	49.2
H12	C12	C14	C15	360.0	59.9
H12	C12	C14	C17	238.2	180.0
H12	C12	C14	C18	119.3	300.0
C4	C13	H13	C12	235.7	241.2
C4	C13	H13	H13A	117.9	120.5
H13	C13	C12	C14	59.3	49.8
H13	C13	C12	H12	172.7	169.8
C12	C13	H13	H13A	242.2	239.4
C4	C13	H13A	C12	124.3	118.9
C4	C13	H13A	H13	242.2	239.5
H13A	C13	C12	C14	299.3	289.2
H13A	C13	C12	H12	52.7	49.2
C12	C13	H13A	H13	117.9	120.6
H15	C15	C14	C17	300.2	180.0
H15	C15	C14	C18	55.8	60.0
C14	C15	H15	C16	242.5	239.9
C14	C15	H15	H15A	121.3	120.0
C16	C15	H15	H15A	238.8	240.1
H15	C15	C16	H16	60.0	300.0
H15	C15	C16	H16A	180.0	59.9
H15	C15	C16	H16B	300.0	179.9
H15A	C15	C14	C17	60.2	300.0
H15A	C15	C14	C18	175.8	180.0
C14	C15	H15A	C16	117.5	120.0
C14	C15	H15A	H15	238.7	240.0
C16	C15	H15A	H15	121.2	120.0
H15A	C15	C16	H16	300.0	180.0
H15A	C15	C16	H16A	60.0	300.0
H15A	C15	C16	H16B	180.0	60.0
H16	C16	C15	H15	60.0	300.0
H16	C16	C15	H15A	300.0	180.0
C15	C16	H16	H16A	120.0	120.0
C15	C16	H16	H16B	240.0	239.9
H16A	C16	H16	H16B	120.0	119.9
H16A	C16	C15	H15	180.0	59.9
H16A	C16	C15	H15A	60.0	300.0
C15	C16	H16A	H16	240.0	240.0
C15	C16	H16A	H16B	120.0	120.1
H16	C16	H16A	H16B	240.0	240.0
H16B	C16	C15	H15	300.0	179.9
H16B	C16	C15	H15A	180.0	60.0
C15	C16	H16B	H16	120.0	120.0
C15	C16	H16B	H16A	240.0	240.0
H16	C16	H16B	H16A	120.0	119.9
H17	C17	C14	C18	302.3	300.0
C14	C17	H17	H17A	120.0	120.0
C14	C17	H17	H17B	240.0	240.0
H17A	C17	H17	H17B	120.0	120.0
H17A	C17	C14	C18	62.3	60.1
C14	C17	H17A	H17	240.0	240.0
C14	C17	H17A	H17B	120.0	119.9
H17	C17	H17A	H17B	240.0	239.9
H17B	C17	C14	C18	182.3	180.0
C14	C17	H17B	H17	120.0	120.0
C14	C17	H17B	H17A	240.0	240.1
H17	C17	H17B	H17A	120.0	120.1
C14	C18	H18	H18A	120.0	119.9
C14	C18	H18	H18B	240.0	239.9
H18A	C18	H18	H18B	120.0	120.0
C14	C18	H18A	H18	239.9	240.0
C14	C18	H18A	H18B	120.0	120.0
H18	C18	H18A	H18B	240.1	240.0
C14	C18	H18B	H18	120.0	120.1
C14	C18	H18B	H18A	240.0	240.1
H18	C18	H18B	H18A	120.0	120.0