Atom Nomenclature for WWX

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for WWX

Atom Name (V3) Atom Name (V2)
O16 O16
S14 S14
O15 O15
C18 C18
O20 O20
C17 C17
C8 C8
C7 C7
F12 F12
C6 C6
F11 F11
C9 C9
C10 C10
F13 F13
C5 C5
S1 S1
O3 O3
N4 N4
O2 O2
N19 N19
C21 C21
C30 C30
C35 C35
C34 C34
C33 C33
C32 C32
C31 C31
C22 C22
O29 O29
C23 C23
C28 C28
C27 C27
C26 C26
C25 C25
C24 C24
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21