PDB Chemical Component WWV
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for WWV
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C2 |
C1 |
1.411 |
1.383 |
| C6 |
C1 |
1.401 |
1.383 |
| C1 |
S1 |
1.745 |
1.762 |
| N1 |
HN1 |
1.001 |
0.970 |
| N1 |
S1 |
1.589 |
1.657 |
| N1 |
HN1A |
1.000 |
0.970 |
| O1 |
S1 |
1.496 |
1.421 |
| S1 |
O2 |
1.518 |
1.421 |
| C3 |
C2 |
1.405 |
1.381 |
| C2 |
H2 |
1.079 |
1.081 |
| H3 |
C3 |
1.080 |
1.079 |
| C4 |
C3 |
1.405 |
1.389 |
| N7 |
C4 |
1.428 |
1.399 |
| C4 |
C5 |
1.392 |
1.389 |
| H5 |
C5 |
1.080 |
1.080 |
| C5 |
C6 |
1.395 |
1.382 |
| C6 |
H6 |
1.080 |
1.081 |
| C8 |
N7 |
1.326 |
1.348 |
| HN7 |
N7 |
1.000 |
0.969 |
| N9 |
C8 |
1.349 |
1.348 |
| O8 |
C8 |
1.231 |
1.216 |
| C10 |
N9 |
1.387 |
1.400 |
| N9 |
HN9 |
1.000 |
0.969 |
| C15 |
C10 |
1.400 |
1.388 |
| C10 |
C11 |
1.401 |
1.389 |
| C12 |
C11 |
1.395 |
1.381 |
| C11 |
C16 |
1.558 |
1.507 |
| C13 |
C12 |
1.403 |
1.383 |
| C12 |
H12 |
1.080 |
1.080 |
| C14 |
C13 |
1.400 |
1.382 |
| H13 |
C13 |
1.080 |
1.080 |
| H14 |
C14 |
1.080 |
1.080 |
| C14 |
C15 |
1.397 |
1.381 |
| H15 |
C15 |
1.079 |
1.080 |
| H16 |
C16 |
1.100 |
1.090 |
| C16 |
C17 |
1.538 |
1.530 |
| C16 |
C18 |
1.541 |
1.530 |
| H17B |
C17 |
1.100 |
1.090 |
| C17 |
H17 |
1.100 |
1.090 |
| C17 |
H17A |
1.100 |
1.090 |
| H18B |
C18 |
1.100 |
1.090 |
| C18 |
H18A |
1.100 |
1.090 |
| C18 |
H18 |
1.100 |
1.090 |
Bond Angles for WWV
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C1 |
S1 |
N1 |
106.4 |
107.2 |
| C1 |
S1 |
O1 |
107.1 |
106.4 |
| C1 |
S1 |
O2 |
108.5 |
106.4 |
| S1 |
N1 |
HN1 |
109.5 |
120.0 |
| HN1 |
N1 |
HN1A |
109.4 |
120.1 |
| S1 |
N1 |
HN1A |
109.5 |
119.9 |
| N1 |
S1 |
O1 |
111.3 |
106.4 |
| N1 |
S1 |
O2 |
110.8 |
106.4 |
| O1 |
S1 |
O2 |
112.5 |
123.2 |
| C3 |
C2 |
H2 |
119.7 |
120.0 |
| C4 |
C5 |
C6 |
121.1 |
119.9 |
| C5 |
C6 |
H6 |
120.6 |
120.0 |
| C10 |
N9 |
HN9 |
119.0 |
120.0 |
| C10 |
C11 |
C16 |
120.4 |
120.0 |
| C12 |
C11 |
C16 |
120.3 |
120.1 |
| C11 |
C16 |
C17 |
112.4 |
109.5 |
| C11 |
C16 |
C18 |
113.6 |
109.4 |
| C13 |
C12 |
H12 |
120.1 |
120.0 |
| C17 |
C16 |
C18 |
110.0 |
109.5 |
| C16 |
C17 |
H17 |
109.5 |
109.5 |
| C16 |
C17 |
H17A |
109.4 |
109.5 |
| C16 |
C18 |
H18A |
109.5 |
109.5 |
| C16 |
C18 |
H18 |
109.4 |
109.5 |
| H17 |
C17 |
H17A |
109.5 |
109.5 |
| H18 |
C18 |
H18A |
109.5 |
109.5 |
Torsion Angles for WWV
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
S1 |
O2 |
249.1 |
336.5 |
| C1 |
S1 |
N1 |
HN1 |
180.0 |
0.0 |
| C1 |
S1 |
N1 |
HN1A |
300.0 |
180.0 |
| N1 |
S1 |
C1 |
O1 |
119.1 |
246.5 |
| N1 |
S1 |
C1 |
O2 |
240.8 |
113.5 |
| O1 |
S1 |
C1 |
O2 |
121.7 |
227.0 |
| S1 |
N1 |
HN1 |
HN1A |
120.0 |
179.9 |
| HN1 |
N1 |
S1 |
O1 |
296.3 |
246.5 |
| HN1 |
N1 |
S1 |
O2 |
62.3 |
113.6 |
| C1 |
S1 |
N1 |
O1 |
243.7 |
113.5 |
| C1 |
S1 |
N1 |
O2 |
117.7 |
246.5 |
| HN1 |
N1 |
S1 |
HN1A |
240.0 |
180.1 |
| O1 |
S1 |
N1 |
O2 |
234.0 |
133.0 |
| S1 |
N1 |
HN1A |
HN1 |
240.0 |
180.1 |
| HN1A |
N1 |
S1 |
O1 |
56.3 |
66.5 |
| HN1A |
N1 |
S1 |
O2 |
182.2 |
293.5 |
| C1 |
S1 |
O1 |
N1 |
115.8 |
245.9 |
| C1 |
S1 |
O1 |
O2 |
240.9 |
123.0 |
| O1 |
S1 |
N1 |
HN1 |
296.3 |
246.5 |
| O1 |
S1 |
N1 |
HN1A |
56.3 |
66.5 |
| N1 |
S1 |
O1 |
O2 |
125.0 |
237.0 |
| C1 |
S1 |
O2 |
N1 |
243.6 |
114.1 |
| C1 |
S1 |
O2 |
O1 |
118.3 |
237.0 |
| O2 |
S1 |
N1 |
HN1 |
62.3 |
113.6 |
| O2 |
S1 |
N1 |
HN1A |
182.2 |
293.5 |
| N1 |
S1 |
O2 |
O1 |
234.7 |
123.0 |
| C4 |
C3 |
C2 |
H2 |
178.8 |
180.0 |
| C4 |
C5 |
C6 |
H6 |
181.9 |
180.0 |
| H5 |
C5 |
C6 |
H6 |
1.9 |
359.7 |
| C15 |
C10 |
N9 |
HN9 |
113.9 |
202.6 |
| C15 |
C10 |
C11 |
C16 |
179.0 |
180.2 |
| C11 |
C10 |
N9 |
HN9 |
293.5 |
22.9 |
| C12 |
C11 |
C10 |
C16 |
181.1 |
180.0 |
| C10 |
C11 |
C16 |
C17 |
157.4 |
125.2 |
| C10 |
C11 |
C16 |
C18 |
283.2 |
245.2 |
| C10 |
C11 |
C12 |
C16 |
178.9 |
180.0 |
| C12 |
C11 |
C16 |
C17 |
336.4 |
305.2 |
| C12 |
C11 |
C16 |
C18 |
102.1 |
65.2 |
| C17 |
C16 |
C11 |
C18 |
234.3 |
240.0 |
| C11 |
C16 |
C17 |
H17 |
300.0 |
300.0 |
| C11 |
C16 |
C17 |
H17A |
60.0 |
60.0 |
| C11 |
C16 |
C18 |
H18A |
300.0 |
60.0 |
| C11 |
C16 |
C18 |
H18 |
60.0 |
300.0 |
| C13 |
C12 |
C11 |
C16 |
180.1 |
180.0 |
| H12 |
C12 |
C11 |
C16 |
0.1 |
0.0 |
| C14 |
C13 |
C12 |
H12 |
181.4 |
180.0 |
| H16 |
C16 |
C17 |
H17 |
55.2 |
60.0 |
| H16 |
C16 |
C17 |
H17A |
175.3 |
180.0 |
| H16 |
C16 |
C18 |
H18A |
185.0 |
300.0 |
| H16 |
C16 |
C18 |
H18 |
304.9 |
180.0 |
| C11 |
C16 |
C17 |
C18 |
127.7 |
120.0 |
| C17 |
C16 |
C18 |
H18A |
67.0 |
180.0 |
| C17 |
C16 |
C18 |
H18 |
186.9 |
60.0 |
| H17 |
C17 |
C16 |
H17A |
240.0 |
240.0 |
| C11 |
C16 |
C18 |
C17 |
233.0 |
240.0 |
| C18 |
C16 |
C17 |
H17 |
172.3 |
180.0 |
| C18 |
C16 |
C17 |
H17A |
292.4 |
300.0 |
| H18 |
C18 |
C16 |
H18A |
120.0 |
239.9 |
| H17 |
C17 |
C16 |
C18 |
172.3 |
180.0 |
| C16 |
C17 |
H17 |
H17A |
120.0 |
120.0 |
| H17A |
C17 |
C16 |
C18 |
292.4 |
300.0 |
| C16 |
C17 |
H17A |
H17 |
240.0 |
240.0 |
| C16 |
C18 |
H18A |
H18 |
119.9 |
240.0 |
| C16 |
C18 |
H18 |
H18A |
240.0 |
120.0 |