Atom Nomenclature for WTJ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for WTJ

Atom Name (V3) Atom Name (V2)
C01 C01
N02 N02
C03 C03
C04 C04
C05 C05
N06 N06
C07 C07
O08 O08
C09 C09
C10 C10
C11 C11
C12 C12
S13 S13
C14 C14
C15 C15
O16 O16
C17 C17
C18 C18
O19 O19
C20 C20
C21 C21
N22 N22
C23 C23
N24 N24
H011 H011
H012 H012
H013 H013
H031 H031
H032 H032
H033 H033
H041 H041
H042 H042
H051 H051
H052 H052
H06 H06
H10 H10
H21 H21
H14 H14
H171 H171
H172 H172
H181 H181
H182 H182
H241 H241
H242 H242