Atom Nomenclature for WSH

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for WSH

Atom Name (V3) Atom Name (V2)
C17 C17
C10 C10
C18 C18
C16 C16
C22 C22
C11 C11
C9 C9
C23 C23
C19 C19
C15 C15
C21 C21
C12 C12
C8 C8
C24 C24
C14 C14
C20 C20
C7 C7
C25 C25
C3 C3
C2 C2
C13 C13
C5 C5
C4 C4
C1 C1
C6 C6
N2 N2
N1 N1
N4 N4
N5 N5
N3 N3
O1 O1
O2 O2
H17 H17
H18 H18
H16 H16
H10 H10
H11 H11
H9 H9
H19 H19
H15 H15
H22 H22
H23 H23
H21 H21
H12 H12
H8 H8
H24 H24
H61C H61C
H62C H62C
H4 H4
H11C H11C
H12C H12C
H13C H13C
H3 H3