Atom Nomenclature for WRG

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for WRG

Atom Name (V3) Atom Name (V2)
CAW CAW
OAE OAE
CAB CAB
CAA CAA
NH1 NH1
OAG OAG
O O
CG CG
CD CD
CB CB
NAS NAS
NE NE
NH2 NH2
N N
CZ CZ
CAZ CAZ
C C
CA CA
CAC CAC
NBE NBE
CBD CBD
CAY CAY
OAF OAF
CAR CAR
CBB CBB
CAN CAN
CAL CAL
CAJ CAJ
CAK CAK
CAM CAM
OAI OAI
HAB HAB
HABA HABA
HABB HABB
HAA HAA
HAAA HAAA
HAAB HAAB
HNH1 HNH1
HG HG
HGA HGA
HD HD
HDA HDA
HB HB
HBA HBA
HNAS HNAS
HNE HNE
HNH2 HNH2
HN HN
HA HA
HAC HAC
HACA HACA
HACB HACB
HBD HBD
HAR HAR
HARA HARA
HAN HAN
HAL HAL
HAJ HAJ
HAK HAK
HAM HAM
HOA HOA