Atom Nomenclature for WGZ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for WGZ

Atom Name (V3) Atom Name (V2)
C01 C01
C02 C02
O03 O03
C04 C04
C05 C05
C06 C06
N07 N07
C08 C08
N09 N09
C10 C10
C11 C11
C12 C12
C13 C13
O14 O14
C15 C15
C16 C16
C17 C17
N18 N18
C19 C19
C20 C20
C21 C21
C22 C22
C23 C23
S24 S24
C25 C25
C26 C26
N27 N27
O28 O28
C29 C29
C30 C30
C31 C31
C32 C32
C33 C33
C34 C34
C35 C35
F36 F36
F37 F37
F38 F38
H011 H011
H012 H012
H013 H013
H02 H02
H05 H05
H08 H08
H11 H11
H12 H12
H22 H22
H15 H15
H161 H161
H162 H162
H211 H211
H212 H212
H171 H171
H172 H172
H191 H191
H192 H192
H193 H193
H201 H201
H202 H202
H271 H271
H272 H272
H30 H30
H31 H31
H32 H32
H33 H33