Atom Nomenclature for W9T

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for W9T

Atom Name (V3) Atom Name (V2)
C1 C12
C2 C11
C3 C10
C4 C7
C5 C8
C6 C9
O1 O11
O2 O10
O3 O9
O4 O6
O5 O7
O6 O8
C11 C6
C12 C5
C13 C4
C14 C3
C15 C2
C16 C1
O12 O4
O13 O3
O14 O2
O15 O5
O16 O1
H20 H20
H21 H21
H17 H17
H12 H12
H13 H13
H14 H14
H15 H15
H22 H22
H19 H19
H18 H18
H16 H16
H11 H11
H9 H9
H7 H7
H5 H5
H4 H4
H2 H2
H3 H3
H10 H10
H8 H8
H6 H6
H1 H1