Atom Nomenclature for W66

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for W66

Atom Name (V3) Atom Name (V2)
C07 C07
C06 C06
C05 C05
C04 C04
C03 C03
C02 C02
N02 N02
N01 N01
C08 C08
C09 C09
C16 C16
C15 C15
C14 C14
C13 C13
C12 C12
N11 N11
C17 C17
C18 C18
N20 N20
C19 C19
C21 C21
H021 H021
H022 H022
H03 H03
H071 H071
H072 H072
H073 H073
H05 H05
H081 H081
H082 H082
H091 H091
H092 H092
H14 H14
H12 H12
H16 H16
H171 H171
H172 H172
H181 H181
H182 H182
H191 H191
H192 H192
H20 H20
H211 H211
H212 H212
H213 H213