PDB Chemical Component W54

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for W54

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C31 C3 1.490 1.507
C31 H311 1.115 1.089
C31 H312 1.115 1.089
C31 H313 1.116 1.090
C3 C4 1.401 1.414
C3 N2 1.291 1.301
C4 C5 1.340 1.354
C4 H4 1.104 1.080
C5 O1 1.349 1.341
C5 C1C 1.481 1.507
O1 N2 1.420 1.210
C1C C2C 1.521 1.530
C1C H1C1 1.115 1.090
C1C H1C2 1.114 1.089
C2C C3C 1.522 1.530
C2C H2C1 1.115 1.089
C2C H2C2 1.115 1.089
C3C C4C 1.502 1.529
C3C H3C1 1.114 1.091
C3C H3C2 1.115 1.089
C4C C5C 1.522 1.530
C4C H4C1 1.115 1.088
C4C H4C2 1.115 1.090
C5C O1B 1.440 1.428
C5C H5C1 1.115 1.090
C5C H5C2 1.115 1.089
O1B C1B 1.373 1.359
C1B C2B 1.399 1.389
C1B C6B 1.388 1.389
C2B CL1 1.720 1.736
C2B C3B 1.377 1.380
C3B C4B 1.389 1.396
C3B H3B 1.103 1.080
C4B C5B 1.401 1.396
C4B C2A 1.458 1.478
C5B C6B 1.372 1.379
C5B H5B 1.103 1.080
C6B CL2 1.720 1.736
C2A N3A 1.431 1.297
C2A O1A 1.291 1.349
N3A C4A 1.360 1.476
C4A C5A 1.518 1.546
C4A H4A1 1.114 1.090
C4A H4A2 1.115 1.091
C5A O1A 1.379 1.444
C5A H5A1 1.114 1.090
C5A H5A2 1.115 1.090

Bond Angles for W54

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C3 C31 H311 129.0 109.5
C3 C31 H312 105.4 109.4
C3 C31 H313 105.4 109.5
C31 C3 C4 129.0 126.8
C31 C3 N2 119.9 126.8
H311 C31 H312 105.5 109.5
H311 C31 H313 105.4 109.5
H312 C31 H313 103.8 109.5
C4 C3 N2 111.1 106.4
C3 C4 C5 106.1 104.0
C3 C4 H4 128.6 128.0
C3 N2 O1 106.0 111.6
C5 C4 H4 125.3 128.0
C4 C5 O1 108.9 106.5
C4 C5 C1C 135.0 126.8
O1 C5 C1C 116.1 126.7
C5 O1 N2 107.9 111.5
C5 C1C C2C 113.1 109.5
C5 C1C H1C1 110.9 109.5
C5 C1C H1C2 110.9 109.5
C2C C1C H1C1 110.9 109.5
C2C C1C H1C2 110.8 109.5
C1C C2C C3C 113.1 109.5
C1C C2C H2C1 110.9 109.4
C1C C2C H2C2 110.9 109.4
H1C1 C1C H1C2 99.5 109.4
C3C C2C H2C1 110.9 109.5
C3C C2C H2C2 110.9 109.5
C2C C3C C4C 115.1 109.5
C2C C3C H3C1 110.2 109.5
C2C C3C H3C2 110.2 109.5
H2C1 C2C H2C2 99.4 109.6
C4C C3C H3C1 110.1 109.5
C4C C3C H3C2 110.2 109.5
C3C C4C C5C 114.1 109.5
C3C C4C H4C1 110.5 109.5
C3C C4C H4C2 110.5 109.4
H3C1 C3C H3C2 100.1 109.4
C5C C4C H4C1 110.5 109.5
C5C C4C H4C2 110.5 109.4
C4C C5C O1B 106.9 109.5
C4C C5C H5C1 113.2 109.5
C4C C5C H5C2 113.1 109.5
H4C1 C4C H4C2 99.7 109.5
O1B C5C H5C1 113.2 109.5
O1B C5C H5C2 113.1 109.5
C5C O1B C1B 120.5 106.8
H5C1 C5C H5C2 97.4 109.5
O1B C1B C2B 125.3 119.9
O1B C1B C6B 115.0 119.9
C2B C1B C6B 119.7 120.1
C1B C2B CL1 120.0 120.0
C1B C2B C3B 119.7 120.1
C1B C6B C5B 120.3 120.1
C1B C6B CL2 120.0 120.0
CL1 C2B C3B 120.2 119.9
C2B C3B C4B 120.7 119.9
C2B C3B H3B 119.2 120.0
C4B C3B H3B 120.1 120.1
C3B C4B C5B 119.1 119.8
C3B C4B C2A 121.3 120.1
C5B C4B C2A 119.6 120.1
C4B C5B C6B 120.4 119.9
C4B C5B H5B 120.9 120.0
C4B C2A N3A 126.2 123.1
C4B C2A O1A 123.7 123.1
C6B C5B H5B 118.7 120.1
C5B C6B CL2 119.7 119.9
N3A C2A O1A 110.1 113.8
C2A N3A C4A 112.7 108.4
C2A O1A C5A 106.9 107.6
N3A C4A C5A 98.6 102.0
N3A C4A H4A1 116.4 110.9
N3A C4A H4A2 116.4 110.9
C5A C4A H4A1 116.4 111.0
C5A C4A H4A2 116.4 111.0
C4A C5A O1A 111.7 101.3
C4A C5A H5A1 111.4 111.1
C4A C5A H5A2 111.4 111.1
H4A1 C4A H4A2 94.0 110.8
O1A C5A H5A1 111.4 111.3
O1A C5A H5A2 111.4 110.9
H5A1 C5A H5A2 99.0 110.9

Torsion Angles for W54

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
H311 C31 C3 H312 234.6 240.0
H311 C31 C3 H313 125.2 120.0
H312 C31 C3 H313 250.6 239.9
C4 C3 C31 N2 179.9 180.4
C31 C3 C4 C5 180.0 180.0
C31 C3 C4 H4 360.0 359.9
C31 C3 N2 O1 180.0 179.8
C3 C31 H311 H312 125.3 119.9
C3 C31 H311 H313 234.8 240.0
H311 C31 C3 C4 179.9 90.0
H311 C31 C3 N2 0.0 269.7
H312 C31 H311 H313 109.4 120.1
C3 C31 H312 H311 221.1 240.0
C3 C31 H312 H313 110.6 120.0
H312 C31 C3 C4 305.3 210.0
H312 C31 C3 N2 125.4 29.6
H311 C31 H312 H313 249.4 240.0
C3 C31 H313 H311 138.8 120.0
C3 C31 H313 H312 249.5 240.0
H313 C31 C3 C4 54.7 330.1
H313 C31 C3 N2 234.8 149.7
H311 C31 H313 H312 110.6 120.0
C4 C3 C31 H311 179.9 90.0
C4 C3 C31 H312 305.3 210.0
C4 C3 C31 H313 54.7 330.1
C31 C3 C4 N2 180.1 179.7
C4 C3 N2 O1 0.0 359.5
C5 C4 C3 H4 180.0 180.1
C3 C4 C5 O1 0.1 0.0
C3 C4 C5 C1C 180.0 180.0
N2 C3 C31 H311 0.0 269.7
N2 C3 C31 H312 125.4 29.6
N2 C3 C31 H313 234.8 149.7
C31 C3 N2 C4 179.9 180.3
N2 C3 C4 C5 359.9 0.3
N2 C3 C4 H4 179.9 180.2
C5 O1 N2 C3 360.0 0.5
C5 C4 C3 N2 359.9 0.3
C3 C4 C5 H4 180.0 179.9
O1 C5 C4 C1C 180.0 180.0
C4 C5 O1 N2 360.0 359.7
C4 C5 C1C C2C 238.0 90.0
C4 C5 C1C H1C1 3.2 210.1
C4 C5 C1C H1C2 112.8 330.0
H4 C4 C3 N2 179.9 180.2
C3 C4 H4 C5 180.1 180.1
H4 C4 C5 O1 180.1 180.1
H4 C4 C5 C1C 0.1 0.0
C3 N2 O1 C5 360.0 0.5
O1 C5 C4 H4 180.1 180.1
C4 C5 O1 C1C 180.0 180.0
O1 C5 C1C C2C 58.0 270.0
O1 C5 C1C H1C1 183.2 30.0
O1 C5 C1C H1C2 292.7 150.0
C1C C5 C4 H4 0.1 0.0
C4 C5 C1C O1 180.0 180.0
C1C C5 O1 N2 180.0 179.7
C2C C1C C5 H1C1 234.8 239.9
C2C C1C C5 H1C2 125.2 120.0
C5 C1C C2C C3C 185.8 180.0
C5 C1C C2C H2C1 311.1 300.0
C5 C1C C2C H2C2 60.5 60.1
H1C1 C1C C5 H1C2 250.5 240.1
N2 O1 C5 C1C 180.0 179.7
C5 C1C C2C H1C1 125.2 120.1
C5 C1C C2C H1C2 234.7 240.0
H1C1 C1C C2C H1C2 109.5 119.9
C3C C2C C1C H2C1 234.7 240.0
C3C C2C C1C H2C2 125.3 120.0
C1C C2C C3C C4C 225.6 180.0
C1C C2C C3C H3C1 350.8 300.0
C1C C2C C3C H3C2 100.3 59.9
H2C1 C2C C1C H2C2 250.5 239.9
C5 C1C H1C1 C2C 233.5 240.0
C5 C1C H1C1 H1C2 116.8 120.0
C2C C1C H1C1 H1C2 243.3 240.0
H1C1 C1C C2C C3C 60.6 60.0
H1C1 C1C C2C H2C1 185.8 179.9
H1C1 C1C C2C H2C2 295.3 300.0
C5 C1C H1C2 C2C 126.5 120.0
C5 C1C H1C2 H1C1 243.2 240.0
C2C C1C H1C2 H1C1 116.8 120.0
H1C2 C1C C2C C3C 311.1 300.1
H1C2 C1C C2C H2C1 76.3 60.0
H1C2 C1C C2C H2C2 185.8 180.1
C3C C2C C1C H1C1 60.6 60.0
C3C C2C C1C H1C2 311.1 300.1
C1C C2C C3C H2C1 125.3 119.9
C1C C2C C3C H2C2 234.7 240.1
H2C1 C2C C3C H2C2 109.4 120.1
C4C C3C C2C H3C1 234.8 240.0
C4C C3C C2C H3C2 125.3 120.1
C2C C3C C4C C5C 203.4 180.0
C2C C3C C4C H4C1 328.7 300.0
C2C C3C C4C H4C2 78.1 60.0
H3C1 C3C C2C H3C2 250.5 240.1
H2C1 C2C C1C H1C1 185.8 179.9
H2C1 C2C C1C H1C2 76.3 60.0
C1C C2C H2C1 C3C 233.5 240.0
C1C C2C H2C1 H2C2 116.8 120.0
C3C C2C H2C1 H2C2 243.3 239.9
H2C1 C2C C3C C4C 100.3 60.1
H2C1 C2C C3C H3C1 225.5 180.1
H2C1 C2C C3C H3C2 335.0 300.0
H2C2 C2C C1C H1C1 295.3 300.0
H2C2 C2C C1C H1C2 185.8 180.1
C1C C2C H2C2 C3C 126.5 120.0
C1C C2C H2C2 H2C1 243.2 240.0
C3C C2C H2C2 H2C1 116.7 120.1
H2C2 C2C C3C C4C 350.8 299.9
H2C2 C2C C3C H3C1 116.1 59.9
H2C2 C2C C3C H3C2 225.6 179.9
C4C C3C C2C H2C1 100.3 60.1
C4C C3C C2C H2C2 350.8 299.9
C2C C3C C4C H3C1 125.3 120.0
C2C C3C C4C H3C2 234.7 239.9
H3C1 C3C C4C H3C2 109.5 119.9
C5C C4C C3C H4C1 234.7 239.9
C5C C4C C3C H4C2 125.3 120.0
C3C C4C C5C O1B 300.3 180.0
C3C C4C C5C H5C1 65.6 300.0
C3C C4C C5C H5C2 175.1 60.0
H4C1 C4C C3C H4C2 250.6 240.0
H3C1 C3C C2C H2C1 225.5 180.1
H3C1 C3C C2C H2C2 116.1 59.9
C2C C3C H3C1 C4C 232.0 240.0
C2C C3C H3C1 H3C2 116.0 120.0
C4C C3C H3C1 H3C2 244.0 240.0
H3C1 C3C C4C C5C 78.2 60.0
H3C1 C3C C4C H4C1 203.5 180.0
H3C1 C3C C4C H4C2 312.9 300.0
H3C2 C3C C2C H2C1 335.0 300.0
H3C2 C3C C2C H2C2 225.6 179.9
C2C C3C H3C2 C4C 128.0 120.0
C2C C3C H3C2 H3C1 244.0 240.0
C4C C3C H3C2 H3C1 116.0 120.0
H3C2 C3C C4C C5C 328.7 300.0
H3C2 C3C C4C H4C1 94.0 60.1
H3C2 C3C C4C H4C2 203.4 180.1
C5C C4C C3C H3C1 78.2 60.0
C5C C4C C3C H3C2 328.7 300.0
C3C C4C C5C H4C1 125.3 120.0
C3C C4C C5C H4C2 234.7 240.0
H4C1 C4C C5C H4C2 109.4 120.0
O1B C5C C4C H5C1 234.7 240.0
O1B C5C C4C H5C2 125.2 120.0
C4C C5C O1B C1B 181.2 180.0
H5C1 C5C C4C H5C2 250.5 240.0
H4C1 C4C C3C H3C1 203.5 180.0
H4C1 C4C C3C H3C2 94.0 60.1
C3C C4C H4C1 C5C 232.7 240.0
C3C C4C H4C1 H4C2 116.3 120.0
C5C C4C H4C1 H4C2 243.6 240.0
H4C1 C4C C5C O1B 175.0 60.0
H4C1 C4C C5C H5C1 300.3 179.9
H4C1 C4C C5C H5C2 49.8 300.0
H4C2 C4C C3C H3C1 312.9 300.0
H4C2 C4C C3C H3C2 203.4 180.1
C3C C4C H4C2 C5C 127.3 120.0
C3C C4C H4C2 H4C1 243.7 240.0
C5C C4C H4C2 H4C1 116.4 120.0
H4C2 C4C C5C O1B 65.6 300.0
H4C2 C4C C5C H5C1 190.9 59.9
H4C2 C4C C5C H5C2 300.4 180.0
O1B C5C C4C H4C1 175.0 60.0
O1B C5C C4C H4C2 65.6 300.0
C4C C5C O1B H5C1 125.2 120.0
C4C C5C O1B H5C2 234.8 240.0
H5C1 C5C O1B H5C2 109.5 120.0
C5C O1B C1B C2B 69.2 90.0
C5C O1B C1B C6B 249.1 269.7
H5C1 C5C C4C H4C1 300.3 179.9
H5C1 C5C C4C H4C2 190.9 59.9
C4C C5C H5C1 O1B 238.2 240.0
C4C C5C H5C1 H5C2 119.1 120.0
O1B C5C H5C1 H5C2 240.9 240.0
H5C1 C5C O1B C1B 55.9 60.0
H5C2 C5C C4C H4C1 49.8 300.0
H5C2 C5C C4C H4C2 300.4 180.0
C4C C5C H5C2 O1B 121.8 120.0
C4C C5C H5C2 H5C1 240.9 240.0
O1B C5C H5C2 H5C1 119.1 120.0
H5C2 C5C O1B C1B 306.4 300.0
C1B O1B C5C H5C1 55.9 60.0
C1B O1B C5C H5C2 306.4 300.0
C2B C1B O1B C6B 180.1 180.3
O1B C1B C2B CL1 359.8 360.0
O1B C1B C2B C3B 177.8 180.0
O1B C1B C6B C5B 182.1 179.7
O1B C1B C6B CL2 1.1 0.3
O1B C1B C2B C6B 179.9 179.7
C2B C1B C6B C5B 2.0 359.4
C2B C1B C6B CL2 181.1 180.0
CL1 C2B C1B C3B 182.0 180.0
C1B C2B C3B C4B 0.6 359.9
C1B C2B C3B H3B 180.6 180.0
O1B C1B C6B C2B 180.1 180.3
C6B C1B C2B CL1 179.9 180.3
C6B C1B C2B C3B 357.9 0.3
C4B C5B C6B C1B 359.7 0.6
C1B C6B C5B H5B 179.7 180.3
C5B C6B C1B CL2 180.9 179.4
CL1 C2B C1B C6B 179.9 180.3
C1B C2B CL1 C3B 178.0 180.0
CL1 C2B C3B C4B 178.6 180.0
CL1 C2B C3B H3B 358.6 0.0
C3B C2B C1B C6B 357.9 0.3
C1B C2B C3B CL1 182.0 180.0
C4B C3B C2B H3B 180.0 179.9
C2B C3B C4B C5B 1.1 0.1
C2B C3B C4B C2A 182.6 180.0
C2B C3B C4B H3B 180.0 180.1
C5B C4B C3B C2A 178.5 180.1
C3B C4B C5B C6B 358.7 359.6
C3B C4B C5B H5B 178.8 180.0
C3B C4B C2A N3A 359.1 180.0
C3B C4B C2A O1A 178.8 359.8
C2B C3B H3B C4B 180.0 179.9
H3B C3B C4B C5B 181.1 180.0
H3B C3B C4B C2A 2.6 359.9
C1B C6B C5B C4B 359.7 0.6
C5B C4B C3B H3B 181.1 180.0
C3B C4B C5B C2A 181.5 179.9
C5B C4B C2A N3A 180.6 359.9
C5B C4B C2A O1A 0.3 179.7
C6B C5B C4B H5B 180.0 179.7
C4B C5B C6B CL2 180.7 180.0
C2A C4B C3B H3B 2.6 359.9
C3B C4B C2A C5B 178.5 180.1
C2A C4B C5B C6B 177.3 179.7
C2A C4B C5B H5B 357.3 0.1
N3A C2A C4B O1A 180.3 180.2
C4B C2A N3A C4A 179.7 180.4
C4B C2A O1A C5A 180.2 162.5
C1B C6B C5B CL2 179.1 180.6
C6B C5B C4B C2A 177.3 179.7
C4B C5B C6B H5B 180.0 180.3
H5B C5B C4B C2A 357.3 0.1
C4B C5B H5B C6B 180.0 179.7
H5B C5B C6B CL2 0.6 359.7
C1B C6B CL2 C5B 180.9 179.4
CL2 C6B C5B H5B 0.6 359.7
C4B C2A N3A O1A 179.7 179.8
N3A C2A O1A C5A 360.0 342.3
C2A N3A C4A C5A 0.1 15.1
C2A N3A C4A H4A1 125.4 133.3
C2A N3A C4A H4A2 234.9 256.9
C4B C2A O1A N3A 180.3 180.2
O1A C2A N3A C4A 359.9 0.6
C4A C5A O1A C2A 0.1 25.2
C2A O1A C5A H5A1 234.8 267.1
C2A O1A C5A H5A2 125.3 143.2
C4A N3A C2A O1A 359.9 0.6
C5A C4A N3A H4A1 234.7 241.8
C5A C4A N3A H4A2 125.3 118.2
N3A C4A C5A O1A 359.9 336.3
N3A C4A C5A H5A1 125.1 94.6
N3A C4A C5A H5A2 234.6 218.5
H4A1 C4A N3A H4A2 250.5 236.5
C2A O1A C5A C4A 0.1 25.2
N3A C4A C5A H4A1 125.2 118.2
N3A C4A C5A H4A2 234.8 241.8
H4A1 C4A C5A H4A2 109.6 123.7
O1A C5A C4A H5A1 234.7 241.7
O1A C5A C4A H5A2 125.2 117.8
H5A1 C5A C4A H5A2 250.5 236.1
N3A C4A H4A1 C5A 244.4 247.3
N3A C4A H4A1 H4A2 122.1 123.6
C5A C4A H4A1 H4A2 237.8 236.2
H4A1 C4A C5A O1A 234.6 218.1
H4A1 C4A C5A H5A1 359.9 336.4
H4A1 C4A C5A H5A2 109.4 100.3
N3A C4A H4A2 C5A 115.6 112.6
N3A C4A H4A2 H4A1 237.8 236.4
C5A C4A H4A2 H4A1 122.2 123.8
H4A2 C4A C5A O1A 125.1 94.4
H4A2 C4A C5A H5A1 250.3 212.7
H4A2 C4A C5A H5A2 359.8 336.6
O1A C5A C4A H4A1 234.6 218.1
O1A C5A C4A H4A2 125.1 94.4
C4A C5A O1A H5A1 125.3 118.1
C4A C5A O1A H5A2 234.8 242.1
H5A1 C5A O1A H5A2 109.5 123.9
H5A1 C5A C4A H4A1 359.9 336.4
H5A1 C5A C4A H4A2 250.3 212.7
C4A C5A H5A1 O1A 234.5 247.9
C4A C5A H5A1 H5A2 117.3 124.0
O1A C5A H5A1 H5A2 242.7 236.1
H5A2 C5A C4A H4A1 109.4 100.3
H5A2 C5A C4A H4A2 359.8 336.6
C4A C5A H5A2 O1A 125.4 111.8
C4A C5A H5A2 H5A1 242.7 236.0
O1A C5A H5A2 H5A1 117.3 124.2