Atom Nomenclature for W11

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for W11

Atom Name (V3) Atom Name (V2)
O1 O1
N2 N2
C3 C3
CM3 CM3
C4 C4
C5 C5
C1C C1C
C2C C2C
C3C C3C
O1B O1B
C1B C1B
C2B C2B
CM2 CM2
C3B C3B
C4B C4B
C5B C5B
C6B C6B
CM6 CM6
C2A C2A
N1A N1A
N3A N3A
C3A C3A
CM4 CM4
O1A O1A
F1 F1
F2 F2
F3 F3
HM31 1HM3
HM32 2HM3
HM33 3HM3
H41 1H4
H1C1 1H1C
H1C2 2H1C
H2C1 1H2C
H2C2 2H2C
H3C1 1H3C
H3C2 2H3C
HM21 1HM2
HM22 2HM2
HM23 3HM2
H3B H3B
H5B H5B
HM61 1HM6
HM62 2HM6
HM63 3HM6