PDB Chemical Component VZV

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for VZV

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O10 C6 1.251 1.213
C6 N7 1.434 1.349
C6 C4 1.592 1.506
C8 N7 1.515 1.465
N7 C9 1.534 1.465
C4 C3 1.519 1.544
C4 N5 1.469 1.470
C3 C2 1.540 1.551
O43 C42 1.239 1.217
N5 C42 1.379 1.348
N5 C1 1.488 1.475
C2 C1 1.513 1.547
C42 C37 1.521 1.465
C37 S36 1.664 1.772
C37 C38 1.541 1.340
S36 C34 1.711 1.778
C41 C39 1.527 1.530
C38 C39 1.563 1.506
C38 N35 1.480 1.363
C40 C39 1.536 1.530
C34 N35 1.359 1.369
C34 N33 1.234 1.305
N35 C31 1.424 1.488
N33 C32 1.488 1.465
C31 C32 1.562 1.538
C31 C24 1.519 1.507
C32 C44 1.544 1.530
C32 C15 1.568 1.507
C25 C24 1.407 1.382
C25 C26 1.391 1.382
C24 C23 1.385 1.383
C26 C21 1.385 1.383
C15 C14 1.409 1.382
C15 C16 1.403 1.383
C14 C13 1.379 1.382
C23 C22 1.364 1.382
C21 C22 1.401 1.384
C21 CL2 1.764 1.736
C16 C11 1.379 1.382
C13 C12 1.398 1.383
C11 C12 1.373 1.383
C12 CL1 1.764 1.736
C4 H1 1.100 1.090
C9 H2 1.100 1.090
C9 H3 1.100 1.090
C9 H4 1.100 1.090
C8 H5 1.100 1.090
C8 H6 1.100 1.091
C8 H7 1.100 1.090
C3 H8 1.100 1.090
C3 H9 1.100 1.090
C2 H10 1.100 1.090
C2 H11 1.100 1.091
C1 H12 1.100 1.090
C1 H13 1.100 1.089
C39 H16 1.100 1.090
C41 H17 1.100 1.091
C41 H18 1.100 1.090
C41 H19 1.100 1.091
C40 H20 1.100 1.091
C40 H21 1.100 1.089
C40 H22 1.100 1.090
C31 H23 1.100 1.090
C23 H24 1.080 1.080
C22 H25 1.080 1.080
C25 H26 1.080 1.080
C26 H27 1.080 1.080
C44 H28 1.100 1.090
C44 H29 1.100 1.090
C44 H30 1.100 1.090
C16 H31 1.080 1.080
C11 H32 1.080 1.080
C14 H33 1.080 1.081
C13 H34 1.080 1.079

Bond Angles for VZV

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O10 C6 N7 118.2 120.0
C6 N7 C9 125.9 120.0
C6 C4 C3 114.0 109.9
C6 C4 H1 110.7 110.0
N7 C9 H2 109.5 109.5
N7 C9 H3 109.4 109.5
N7 C9 H4 109.5 109.4
C4 C3 C2 107.1 103.0
C3 C4 H1 111.8 109.8
C4 C3 H8 110.1 110.7
C4 C3 H9 110.1 110.7
C4 N5 C1 112.1 108.7
C3 C2 C1 101.7 101.7
C2 C3 H8 110.1 110.7
C2 C3 H9 110.1 110.7
C3 C2 H10 111.4 111.1
C3 C2 H11 111.4 110.9
O43 C42 C37 114.9 120.0
N5 C42 C37 123.0 120.0
N5 C1 C2 99.8 104.9
N5 C1 H12 111.8 110.3
N5 C1 H13 111.8 110.4
C1 C2 H10 111.4 111.1
C1 C2 H11 111.4 110.8
C2 C1 H12 111.8 110.4
C2 C1 H13 111.9 110.2
C42 C37 S36 119.5 127.2
C42 C37 C38 124.6 127.3
C38 C37 S36 113.7 105.5
C37 S36 C34 92.6 94.3
C37 C38 C39 125.3 120.7
C37 C38 N35 97.5 118.6
S36 C34 N33 133.3 140.0
C41 C39 H16 104.7 109.4
C39 C38 N35 110.9 120.7
C38 C39 H16 104.4 109.5
C38 N35 C31 129.9 136.5
C40 C39 H16 104.6 109.5
C34 N33 C32 108.2 110.2
N35 C31 C32 103.5 103.8
N35 C31 C24 110.3 110.6
N35 C31 H23 110.0 110.5
C31 C32 N33 102.1 104.1
N33 C32 C44 110.2 110.6
N33 C32 C15 114.4 110.5
C24 C31 C32 115.9 110.6
C31 C32 C44 109.3 110.5
C31 C32 C15 112.0 110.5
C32 C31 H23 108.2 110.6
C31 C24 C23 115.8 119.9
C24 C31 H23 108.7 110.6
C44 C32 C15 108.7 110.6
C32 C44 H28 109.5 109.5
C32 C44 H29 109.5 109.5
C32 C44 H30 109.5 109.5
C32 C15 C14 124.0 120.0
C32 C15 C16 116.5 120.0
C25 C26 C21 117.2 120.0
C26 C25 H26 120.2 120.0
C25 C26 H27 121.4 120.0
C24 C23 C22 117.3 120.0
C24 C23 H24 121.4 120.1
C26 C21 CL2 122.2 120.0
C21 C26 H27 121.4 120.0
C16 C15 C14 119.4 120.0
C15 C14 C13 118.6 120.1
C15 C14 H33 120.7 119.9
C15 C16 C11 121.5 120.0
C15 C16 H31 119.3 120.0
C14 C13 C12 120.7 120.0
C13 C14 H33 120.7 120.0
C14 C13 H34 119.7 120.0
C22 C23 H24 121.4 120.0
C23 C22 H25 119.6 120.0
C21 C22 H25 119.6 120.0
C16 C11 C12 118.4 120.0
C11 C16 H31 119.3 120.0
C16 C11 H32 120.8 120.0
C11 C12 C13 121.4 120.0
C13 C12 CL1 121.9 120.0
C12 C13 H34 119.7 120.0
C11 C12 CL1 116.7 120.0
C12 C11 H32 120.8 120.0
H2 C9 H3 109.5 109.5
H2 C9 H4 109.5 109.5
H3 C9 H4 109.5 109.5
H5 C8 H6 109.4 109.5
H5 C8 H7 109.4 109.6
H6 C8 H7 109.5 109.4
H8 C3 H9 109.4 110.8
H10 C2 H11 109.5 110.9
H12 C1 H13 109.5 110.4
H17 C41 H18 109.5 109.5
H17 C41 H19 109.5 109.4
H18 C41 H19 109.5 109.5
H20 C40 H21 109.5 109.5
H20 C40 H22 109.5 109.4
H21 C40 H22 109.4 109.5
H28 C44 H29 109.4 109.5
H28 C44 H30 109.5 109.4
H29 C44 H30 109.5 109.5

Torsion Angles for VZV

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O10 C6 N7 C9 115.2 360.0
O10 C6 C4 C3 274.8 118.6
O10 C6 C4 H1 41.9 239.6
N7 C6 C4 C3 96.4 298.5
N7 C6 C4 H1 223.5 59.6
C6 N7 C9 H2 180.0 90.0
C6 N7 C9 H3 300.0 210.0
C6 N7 C9 H4 60.0 330.0
C6 C4 C3 C2 233.8 218.4
C3 C4 C6 H1 232.9 239.0
C6 C4 C3 H8 353.4 336.8
C6 C4 C3 H9 114.1 100.0
C6 C4 N5 C1 105.1 118.5
C8 N7 C9 H2 359.0 270.0
C8 N7 C9 H3 119.0 30.0
C8 N7 C9 H4 239.0 150.0
H2 C9 N7 H3 240.0 240.0
H2 C9 N7 H4 120.0 120.0
H3 C9 N7 H4 240.0 240.0
C6 C4 C3 H1 126.6 121.1
C3 C4 N5 C1 345.7 359.1
C4 C3 C2 C1 34.6 35.3
C2 C3 C4 H8 240.4 241.6
C2 C3 C4 H9 119.7 118.4
C4 C3 C2 H10 153.4 153.6
C4 C3 C2 H11 275.9 277.4
H8 C3 C4 H9 239.3 236.8
C4 N5 C42 C37 171.5 184.5
C4 N5 C1 C2 35.7 23.8
C4 N5 C1 H12 154.1 142.8
C4 N5 C1 H13 277.3 265.1
C2 C3 C4 H1 107.2 97.3
C4 C3 C2 H8 119.6 118.3
C4 C3 C2 H9 240.4 241.6
N5 C1 C2 C3 319.4 323.3
C1 C2 C3 H10 241.3 241.7
C1 C2 C3 H11 118.7 117.9
C3 C2 C1 H12 201.0 204.4
C3 C2 C1 H13 77.8 82.1
H8 C3 C2 H9 120.7 123.3
H10 C2 C3 H11 237.5 236.2
N5 C42 O43 C37 175.4 180.3
O43 C42 C37 S36 101.7 173.8
O43 C42 C37 C38 299.6 354.1
O43 C42 N5 C37 184.9 179.7
N5 C42 C37 S36 286.3 353.4
N5 C42 C37 C38 124.2 173.8
C3 C2 C1 N5 319.4 323.3
C1 N5 C42 C37 357.7 4.3
N5 C1 C2 H10 200.7 205.0
N5 C1 C2 H11 78.1 81.3
C2 C1 N5 H12 241.6 241.1
C2 C1 N5 H13 118.4 118.8
H12 C1 N5 H13 236.8 237.7
C1 C2 C3 H8 275.0 277.0
C1 C2 C3 H9 154.3 153.7
C3 C2 C1 H10 118.7 118.2
C3 C2 C1 H11 241.3 242.0
N5 C1 C2 H12 118.4 118.9
N5 C1 C2 H13 241.6 241.2
H10 C2 C1 H11 122.5 123.8
H12 C1 C2 H13 123.2 122.3
C38 C37 C42 S36 197.9 180.4
C42 C37 S36 C34 185.2 180.0
C42 C37 C38 C39 312.2 360.0
C42 C37 C38 N35 189.9 180.0
C42 C37 S36 C38 196.0 180.3
S36 C37 C38 C39 149.2 180.3
S36 C37 C38 N35 26.9 0.2
C37 S36 C34 N33 166.9 180.0
C42 C37 C38 S36 163.0 179.7
C38 C37 S36 C34 349.2 359.7
C39 C38 C37 N35 122.3 180.0
C37 C38 C39 H16 235.8 12.8
C37 C38 N35 C31 178.7 180.0
S36 C34 N33 C32 183.1 180.4
C41 C39 C38 N35 110.1 312.8
C38 C39 C41 H16 242.2 240.0
C40 C39 C41 H16 112.4 120.0
C39 C38 C37 S36 149.2 180.3
C37 C38 C39 N35 243.8 180.0
C41 C39 C38 H16 118.0 120.0
C39 C38 N35 C31 46.3 360.0
C40 C39 C38 H16 248.9 240.0
N35 C38 C37 S36 26.9 0.2
C37 C38 N35 C39 132.4 180.0
N35 C38 C39 H16 352.1 192.8
C38 N35 C31 C32 136.4 180.0
C38 N35 C31 C24 260.9 298.6
C38 N35 C31 H23 20.9 61.5
C41 C39 C40 H16 247.6 240.0
C40 C39 C38 N35 241.0 72.8
C38 C39 C40 H16 110.9 120.0
C37 S36 C34 N35 348.5 0.3
C34 N35 C31 C32 350.0 360.0
C34 N35 C31 H23 234.6 241.4
C31 C32 N33 C34 352.5 359.9
C34 N33 C32 C44 108.6 118.6
C34 N33 C32 C15 231.4 241.3
N35 C31 C32 N33 10.4 0.0
C24 C31 N35 C32 124.6 118.6
N35 C31 C32 C44 253.8 241.3
N35 C31 C32 C15 133.2 118.7
C32 C31 N35 H23 115.4 118.6
N35 C31 C24 C23 143.7 139.9
C24 C31 N35 H23 240.0 237.1
C24 C31 C32 N33 249.5 241.5
C31 C32 N33 C44 243.9 241.3
C31 C32 N33 C15 121.1 118.6
N33 C32 C31 H23 127.2 118.6
C44 C32 N33 C15 237.2 237.3
N33 C32 C44 H28 180.0 305.3
N33 C32 C44 H29 300.0 65.3
N33 C32 C44 H30 60.0 185.4
N33 C32 C15 C14 18.2 11.3
N33 C32 C15 C16 196.2 191.6
C34 N33 C32 C31 352.5 359.9
N35 C31 C32 C24 120.9 118.6
N35 C31 C32 H23 243.3 241.5
N33 C32 C31 C44 116.7 118.7
N33 C32 C31 C15 237.2 241.4
C32 C31 C24 C23 260.9 254.2
C24 C31 C32 H23 122.4 122.9
C44 C32 C31 C15 120.6 122.7
C31 C32 C44 H28 291.5 60.0
C31 C32 C44 H29 51.4 180.0
C31 C32 C44 H30 171.4 300.0
C31 C32 C15 C14 262.7 256.6
C31 C32 C15 C16 80.7 77.0
N35 C31 C24 C32 242.8 245.6
N35 C31 C24 H23 120.8 122.8
C24 C31 C32 C44 132.9 122.8
C24 C31 C32 C15 12.3 0.1
C32 C31 C24 H23 237.9 237.2
C31 C24 C23 C22 178.7 180.0
C31 C24 C23 H24 358.7 359.9
C31 C32 C44 N33 111.5 114.7
N33 C32 C44 C15 126.0 122.7
C31 C32 C44 C15 237.5 237.4
C44 C32 C31 H23 10.5 359.9
C44 C32 C15 C14 141.8 134.0
C44 C32 C15 C16 319.8 314.4
H28 C44 C32 H29 240.0 240.0
H28 C44 C32 H30 120.0 120.0
H29 C44 C32 H30 240.0 240.0
C31 C32 C15 N33 244.5 245.4
N33 C32 C15 C44 236.4 237.2
C31 C32 C15 C44 120.9 122.6
C15 C32 C31 H23 249.9 237.2
C15 C32 C44 H28 54.0 182.6
C15 C32 C44 H29 173.9 302.6
C15 C32 C44 H30 293.9 62.6
C16 C15 C32 C14 178.0 180.3
C32 C15 C14 C13 178.4 180.0
C32 C15 C14 H33 358.3 0.1
C32 C15 C16 C11 181.3 180.0
C32 C15 C16 H31 1.3 360.0
C25 C24 C31 C32 81.9 73.9
C25 C24 C31 H23 204.0 196.7
C25 C24 C23 H24 177.7 180.2
C25 C26 C21 CL2 178.9 180.0
C21 C26 C25 H27 180.0 180.0
C23 C24 C31 C32 260.9 254.2
C23 C24 C31 H23 23.0 17.1
C22 C23 C24 H24 180.0 180.1
C24 C23 C22 H25 181.2 179.9
C21 C26 C25 H26 179.6 180.0
C25 C26 C21 H27 180.0 180.0
C26 C21 C22 H25 180.2 179.8
C32 C15 C14 C16 177.9 180.3
C14 C15 C16 C11 359.4 0.3
C14 C15 C16 H31 179.4 180.3
C15 C14 C13 C12 359.9 0.0
C13 C14 C15 H33 180.0 179.9
C15 C14 C13 H34 179.9 180.0
C32 C15 C16 C14 181.9 179.7
C16 C15 C14 C13 0.4 359.7
C16 C15 C14 H33 180.4 179.8
C15 C16 C11 C12 0.4 360.0
C11 C16 C15 H31 180.0 180.0
C15 C16 C11 H32 180.4 180.0
C15 C14 C13 H33 180.0 180.1
C11 C12 C13 C14 359.9 0.3
C14 C13 C12 CL1 178.7 180.0
C12 C13 C14 H34 180.0 180.0
C24 C23 C22 H24 180.0 179.9
C21 C22 C23 H25 180.0 180.1
C21 C22 C23 H24 181.2 180.0
C23 C22 C21 H25 180.0 179.9
CL2 C21 C26 H27 358.8 0.0
CL2 C21 C22 H25 0.7 0.1
C11 C16 C15 C14 359.4 0.3
C15 C16 C11 H31 180.0 180.0
C16 C11 C12 C13 360.0 359.7
C16 C11 C12 CL1 181.1 180.0
C12 C11 C16 H32 180.0 180.0
C12 C13 C14 H33 179.9 179.9
C14 C13 C12 H34 180.0 180.0
C11 C12 C13 CL1 181.1 180.3
C13 C12 C11 H32 180.0 179.7
C14 C13 C12 C11 359.9 0.3
C12 C11 C16 H31 180.4 179.9
C16 C11 C12 H32 180.0 180.0
C13 C12 C11 CL1 178.9 179.7
C11 C12 C13 H34 179.9 180.3
C11 C12 CL1 C13 178.9 179.7
CL1 C12 C13 H34 358.7 0.0
CL1 C12 C11 H32 1.0 360.0
C6 C4 H1 C3 231.7 238.9
H1 C4 C3 C2 107.2 97.3
H1 C4 C3 H8 226.9 215.6
H1 C4 C3 H9 347.6 338.9
H1 C4 N5 C1 226.0 239.7
N7 C9 H2 H3 120.0 120.0
N7 C9 H2 H4 240.0 240.0
H3 C9 H2 H4 120.0 120.0
N7 C9 H3 H2 240.0 240.0
N7 C9 H3 H4 120.0 120.0
H2 C9 H3 H4 240.0 240.0
N7 C9 H4 H2 120.0 120.0
N7 C9 H4 H3 240.0 240.0
H2 C9 H4 H3 120.0 120.0
H6 C8 H5 H7 120.0 120.0
H5 C8 H6 H7 240.1 239.9
H5 C8 H7 H6 119.9 120.0
C4 C3 H8 C2 242.2 246.5
H8 C3 C4 H1 226.9 215.6
C4 C3 H8 H9 121.1 123.2
H8 C3 C2 C1 275.0 277.0
C2 C3 H8 H9 238.9 236.7
H8 C3 C2 H10 33.7 35.2
H8 C3 C2 H11 156.3 159.1
C4 C3 H9 C2 117.8 113.5
H9 C3 C4 H1 347.6 338.9
C4 C3 H9 H8 238.9 236.8
H9 C3 C2 C1 154.3 153.7
C2 C3 H9 H8 121.1 123.3
H9 C3 C2 H10 273.0 272.0
H9 C3 C2 H11 35.5 35.8
C3 C2 H10 C1 247.3 247.6
H10 C2 C3 H8 33.7 35.2
H10 C2 C3 H9 273.0 272.0
C3 C2 H10 H11 123.6 123.9
C1 C2 H10 H11 236.4 236.3
H10 C2 C1 H12 82.3 86.1
H10 C2 C1 H13 319.1 323.9
C3 C2 H11 C1 112.7 112.2
H11 C2 C3 H8 156.3 159.1
H11 C2 C3 H9 35.5 35.8
C3 C2 H11 H10 236.4 236.1
C1 C2 H11 H10 123.6 123.9
H11 C2 C1 H12 319.7 322.4
H11 C2 C1 H13 196.5 200.1
N5 C1 H12 C2 249.1 244.4
N5 C1 H12 H13 124.5 122.3
H12 C1 C2 H10 82.3 86.1
H12 C1 C2 H11 319.7 322.4
C2 C1 H12 H13 235.4 237.8
N5 C1 H13 C2 110.9 115.5
N5 C1 H13 H12 235.5 237.8
H13 C1 C2 H10 319.1 323.9
H13 C1 C2 H11 196.5 200.1
C2 C1 H13 H12 124.5 122.3
H16 C39 C38 N35 352.1 192.8
H17 C41 C39 H16 297.8 179.9
H18 C41 H17 H19 120.0 120.0
H18 C41 C39 H16 57.8 300.0
H17 C41 H18 H19 240.0 240.1
H19 C41 C39 H16 177.8 60.0
H17 C41 H19 H18 120.0 120.0
H20 C40 C39 H16 292.4 289.9
H21 C40 H20 H22 120.0 120.0
H21 C40 C39 H16 52.4 50.0
H20 C40 H21 H22 240.0 240.0
H22 C40 C39 H16 172.4 170.0
H20 C40 H22 H21 120.0 120.0
N35 C31 H23 C32 112.4 114.3
N35 C31 H23 C24 239.0 237.2
H23 C31 C32 N33 127.2 118.6
C24 C31 H23 C32 233.4 237.2
H23 C31 C32 C44 10.5 359.9
H23 C31 C32 C15 249.9 237.2
H23 C31 C24 C23 23.0 17.1
C24 C23 H24 C22 180.0 180.1
H24 C23 C22 H25 1.2 360.0
H25 C22 C23 H24 1.2 360.0
H26 C25 C26 C21 179.6 180.0
H26 C25 C26 H27 359.6 0.0
C25 C26 H27 C21 180.0 180.0
H27 C26 C25 H26 359.6 0.0
H27 C26 C21 CL2 358.8 0.0
H28 C44 C32 C15 54.0 182.6
C32 C44 H28 H29 120.0 120.0
C32 C44 H28 H30 240.0 240.0
H29 C44 H28 H30 120.0 120.0
H29 C44 C32 C15 173.9 302.6
C32 C44 H29 H28 240.0 240.0
C32 C44 H29 H30 120.0 120.0
H28 C44 H29 H30 240.0 240.0
H30 C44 C32 C15 293.9 62.6
C32 C44 H30 H28 120.1 120.0
C32 C44 H30 H29 240.0 240.0
H28 C44 H30 H29 120.0 120.0
H31 C16 C15 C14 179.4 180.3
C15 C16 H31 C11 180.0 180.0
H31 C16 C11 C12 180.4 179.9
H31 C16 C11 H32 0.4 359.9
C16 C11 H32 C12 180.0 180.0
H32 C11 C16 H31 0.4 359.9
H32 C11 C12 C13 180.0 179.7
H32 C11 C12 CL1 1.0 360.0
C15 C14 H33 C13 180.0 179.9
H33 C14 C13 C12 179.9 179.9
H33 C14 C13 H34 359.9 359.9
C14 C13 H34 C12 180.0 180.0
H34 C13 C14 H33 359.9 359.9
H34 C13 C12 CL1 358.7 0.0