PDB Chemical Component VXU

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for VXU

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C2	C3	1.376	1.383
C2	C1	1.368	1.384
C3	C4	1.370	1.384
C1	C11	1.379	1.385
C4	C5	1.367	1.385
C4	C12	1.477	1.507
C11	C5	1.375	1.388
C11	O10	1.379	1.365
C5	O6	1.393	1.364
C8	C9	1.510	1.520
C8	C7	1.513	1.521
C9	O10	1.432	1.429
C7	O6	1.414	1.429
C12	N13	1.456	1.469
C2	H2	1.080	1.079
C3	H3	1.080	1.080
C1	H1	1.080	1.080
C12	H121	1.101	1.090
C12	H122	1.100	1.090
C8	H81C	1.100	1.090
C8	H82C	1.100	1.090
C9	H91C	1.100	1.090
C9	H92C	1.100	1.091
C7	H71C	1.100	1.090
C7	H72C	1.100	1.090
N13	H131	1.000	1.010
N13	H132	1.000	1.009

Bond Angles for VXU

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C3	C2	C1	118.6	120.2
C2	C3	C4	120.3	120.2
C3	C2	H2	120.7	119.9
C2	C3	H3	119.9	119.9
C2	C1	C11	121.3	119.7
C1	C2	H2	120.7	119.9
C2	C1	H1	119.3	120.1
C3	C4	C5	121.1	119.7
C3	C4	C12	121.7	120.1
C4	C3	H3	119.9	119.8
C1	C11	C5	119.7	120.1
C1	C11	O10	117.9	120.3
C11	C1	H1	119.4	120.1
C5	C4	C12	117.2	120.1
C4	C5	C11	119.1	120.1
C4	C5	O6	114.7	120.3
C4	C12	N13	109.9	109.5
C4	C12	H121	109.4	109.5
C4	C12	H122	109.4	109.5
C5	C11	O10	122.4	119.6
C11	C5	O6	126.2	119.7
C11	O10	C9	105.3	115.9
C5	O6	C7	109.1	115.9
C9	C8	C7	107.3	112.3
C8	C9	O10	107.9	110.8
C9	C8	H81C	110.0	108.9
C9	C8	H82C	110.0	109.0
C8	C9	H91C	109.9	109.2
C8	C9	H92C	109.9	109.2
C8	C7	O6	105.2	110.8
C7	C8	H81C	110.0	108.9
C7	C8	H82C	110.0	108.8
C8	C7	H71C	110.5	109.2
C8	C7	H72C	110.5	109.2
O10	C9	H91C	109.8	109.3
O10	C9	H92C	109.8	109.2
O6	C7	H71C	110.5	109.2
O6	C7	H72C	110.5	109.2
N13	C12	H121	109.4	109.4
N13	C12	H122	109.4	109.5
C12	N13	H131	109.5	111.0
C12	N13	H132	109.5	111.0
H121	C12	H122	109.4	109.5
H81C	C8	H82C	109.5	108.8
H91C	C9	H92C	109.5	109.2
H71C	C7	H72C	109.5	109.2
H131	N13	H132	109.4	111.0

Torsion Angles for VXU

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C3	C2	C1	C11	0.8	360.0
C1	C2	C3	H2	180.0	180.3
C3	C2	C1	H1	180.8	180.0
C2	C3	C4	C5	359.0	360.0
C2	C3	C4	C12	179.4	180.0
C4	C3	C2	H3	180.0	180.0
C1	C2	C3	C4	0.5	0.0
C3	C2	C1	H2	180.0	179.7
C1	C2	C3	H3	180.5	180.0
C2	C1	C11	C5	358.3	0.0
C2	C1	C11	O10	179.5	179.9
C11	C1	C2	H1	180.0	179.9
C4	C3	C2	C1	0.5	0.0
C4	C3	C2	H2	180.5	179.7
C2	C3	C4	H3	180.0	180.0
C5	C4	C3	C12	179.7	180.0
C3	C4	C5	C11	0.1	0.0
C3	C4	C5	O6	179.8	180.1
C3	C4	C12	N13	28.5	260.0
C3	C4	C12	H121	148.6	20.0
C3	C4	C12	H122	268.4	140.0
C11	C1	C2	H2	180.8	180.3
C2	C1	C11	H1	180.0	180.1
C4	C5	C11	C1	1.2	360.0
C5	C11	C1	O10	178.8	180.1
C1	C11	C5	O6	181.5	179.9
C1	C11	O10	C9	229.3	111.8
C3	C4	C5	C12	180.3	180.0
C5	C4	C3	H3	179.0	180.0
C1	C11	C5	C4	1.2	360.0
C5	C4	C12	N13	208.8	80.0
C5	C4	C12	H121	328.9	199.9
C5	C4	C12	H122	88.7	319.9
C4	C5	C11	O10	179.9	180.0
C11	C5	C4	O6	180.2	180.0
C4	C5	O6	C7	208.4	248.2
C3	C4	C12	C5	179.7	180.0
C12	C4	C3	H3	359.3	0.0
C12	C4	C5	C11	179.8	180.1
C12	C4	C5	O6	359.5	0.1
N13	C12	C4	H121	239.9	240.0
N13	C12	C4	H122	120.1	120.0
C4	C12	N13	H131	180.0	56.0
C4	C12	N13	H132	300.0	180.0
H121	C12	C4	H122	240.2	240.0
C1	C11	C5	O10	181.3	179.9
C5	C11	C1	H1	178.3	180.0
C11	C5	C4	C12	179.8	180.1
C4	C5	C11	O6	179.7	180.0
C5	C11	O10	C9	50.6	291.7
C11	C5	O6	C7	28.1	68.3
C1	C11	O10	C5	178.7	180.1
O10	C11	C1	H1	359.5	359.9
O10	C11	C5	O6	0.2	0.0
C8	C9	O10	C11	263.3	84.5
C11	O10	C9	H91C	143.6	324.1
C11	O10	C9	H92C	23.1	204.7
O6	C5	C4	C12	359.5	0.1
C4	C5	O6	C11	180.3	180.0
O6	C5	C11	O10	0.2	0.0
C8	C7	O6	C5	268.9	275.6
C5	O6	C7	H71C	149.6	155.3
C5	O6	C7	H72C	28.2	36.0
C11	O10	C9	C8	263.3	84.5
C9	C8	C7	O6	62.7	64.8
C7	C8	C9	H81C	240.3	239.3
C7	C8	C9	H82C	119.6	120.7
C9	C8	C7	H71C	182.1	185.1
C9	C8	C7	H72C	303.4	304.4
O10	C9	C8	H91C	240.3	239.6
O10	C9	C8	H92C	119.7	120.3
H81C	C8	C9	H82C	239.3	241.4
H91C	C9	C8	H92C	239.5	240.7
C5	O6	C7	C8	268.9	275.6
C7	C8	C9	O10	37.2	295.1
C9	C8	C7	H81C	119.7	120.8
C9	C8	C7	H82C	240.4	239.3
C7	C8	C9	H91C	157.0	55.5
C7	C8	C9	H92C	277.5	174.8
O6	C7	C8	H71C	240.7	239.7
O6	C7	C8	H72C	119.3	120.4
H81C	C8	C7	H82C	120.7	118.5
H71C	C7	C8	H72C	238.6	240.7
O10	C9	C8	C7	37.2	295.1
O10	C9	C8	H81C	156.9	55.9
O10	C9	C8	H82C	277.6	174.5
C8	C9	O10	H91C	119.7	120.4
C8	C9	O10	H92C	240.3	239.7
H91C	C9	O10	H92C	120.5	119.4
O6	C7	C8	H81C	303.1	304.1
O6	C7	C8	H82C	182.4	185.6
C8	C7	O6	H71C	119.3	120.3
C8	C7	O6	H72C	240.7	239.6
H71C	C7	O6	H72C	121.4	119.3
C4	C12	N13	H121	120.1	120.0
C4	C12	N13	H122	239.9	240.0
H121	C12	N13	H122	119.8	120.0
H131	N13	C12	H132	240.0	236.0
C3	C2	H2	C1	180.0	180.3
H2	C2	C3	C4	180.5	179.7
H2	C2	C3	H3	0.5	359.6
H2	C2	C1	C11	180.8	180.3
H2	C2	C1	H1	0.8	0.4
H3	C3	C2	C1	180.5	180.0
C2	C3	H3	C4	180.0	180.0
H3	C3	C2	H2	0.5	359.6
H3	C3	C4	C5	179.0	180.0
H3	C3	C4	C12	359.3	0.0
C2	C1	H1	C11	180.0	179.9
H1	C1	C2	H2	0.8	0.4
H1	C1	C11	C5	178.3	180.0
H1	C1	C11	O10	359.5	359.9
C4	C12	H121	N13	239.6	240.0
C4	C12	H121	H122	119.8	120.0
N13	C12	H121	H122	240.2	240.0
H121	C12	N13	H131	60.0	296.0
H121	C12	N13	H132	179.9	60.0
C4	C12	H122	N13	120.4	120.0
C4	C12	H122	H121	240.2	240.0
N13	C12	H122	H121	119.8	120.0
H122	C12	N13	H131	300.1	176.1
H122	C12	N13	H132	60.1	300.0
C9	C8	H81C	C7	242.0	237.2
H81C	C8	C9	O10	156.9	55.9
C9	C8	H81C	H82C	121.0	118.7
H81C	C8	C9	H91C	276.6	176.2
H81C	C8	C9	H92C	37.2	295.6
H81C	C8	C7	O6	303.1	304.1
C7	C8	H81C	H82C	239.0	241.5
H81C	C8	C7	H71C	62.4	64.4
H81C	C8	C7	H72C	183.8	183.7
C9	C8	H82C	C7	117.9	122.8
H82C	C8	C9	O10	277.6	174.5
C9	C8	H82C	H81C	239.0	241.3
H82C	C8	C9	H91C	37.3	294.9
H82C	C8	C9	H92C	157.9	54.2
H82C	C8	C7	O6	182.4	185.6
C7	C8	H82C	H81C	121.0	118.5
H82C	C8	C7	H71C	301.7	305.9
H82C	C8	C7	H72C	63.1	65.2
H91C	C9	C8	C7	157.0	55.5
C8	C9	H91C	O10	241.5	238.7
H91C	C9	C8	H81C	276.6	176.2
H91C	C9	C8	H82C	37.3	294.9
C8	C9	H91C	H92C	120.7	119.3
O10	C9	H91C	H92C	239.3	240.6
H92C	C9	C8	C7	277.5	174.8
C8	C9	H92C	O10	118.5	121.3
H92C	C9	C8	H81C	37.2	295.6
H92C	C9	C8	H82C	157.9	54.2
C8	C9	H92C	H91C	239.3	240.7
O10	C9	H92C	H91C	120.7	119.4
C8	C7	H71C	O6	243.9	238.7
H71C	C7	C8	H81C	62.4	64.4
H71C	C7	C8	H82C	301.7	305.9
C8	C7	H71C	H72C	122.0	119.4
O6	C7	H71C	H72C	238.0	240.6
C8	C7	H72C	O6	116.1	121.3
H72C	C7	C8	H81C	183.8	183.7
H72C	C7	C8	H82C	63.1	65.2
C8	C7	H72C	H71C	238.0	240.7
O6	C7	H72C	H71C	122.0	119.3
H131	N13	C12	H121	60.0	296.0
H131	N13	C12	H122	300.1	176.1
C12	N13	H131	H132	120.0	124.0
H132	N13	C12	H121	179.9	60.0
H132	N13	C12	H122	60.1	300.0
C12	N13	H132	H131	240.0	236.0