PDB Chemical Component VXR

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for VXR

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.366	1.376
C1	O5	1.351	1.359
C1	C6	1.520	1.470
C2	C3	1.429	1.415
C2	H2	1.080	1.081
C3	C4	1.370	1.363
C3	H3	1.079	1.082
C4	C8	1.467	1.436
C4	O5	1.367	1.347
C6	C7	1.526	1.534
C6	H61	1.100	1.110
C6	H62	1.100	1.109
C7	H71	1.100	1.095
C7	H72	1.100	1.094
C7	H73	1.100	1.095
C8	C9	1.340	1.333
C8	H8	1.080	1.090
C9	S10	1.692	1.714
C9	C13	1.455	1.486
S10	C11	1.667	1.756
C11	N14	1.327	1.313
C11	N12	1.266	1.298
N12	C13	1.333	1.382
C13	O28	1.215	1.223
N14	C15	1.459	1.474
N14	HN14	1.000	1.006
C15	C17	1.509	1.524
C15	C16	1.535	1.491
C15	H15	1.100	1.106
C16	C26	1.417	1.395
C16	C22	1.430	1.394
C17	N21	1.309	1.280
C17	N18	1.367	1.330
N18	N19	1.348	1.341
N18	HN18	1.000	1.013
N19	N20	1.312	1.328
N20	N21	1.376	1.376
C22	C23	1.419	1.395
C22	H22	1.080	1.087
C23	C24	1.420	1.395
C23	H23	1.080	1.086
C24	C25	1.411	1.395
C24	F	1.328	1.339
C25	C26	1.416	1.396
C25	H25	1.080	1.086
C26	H26	1.080	1.086

Bond Angles for VXR

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O5	109.7	110.5
C2	C1	C6	123.9	133.2
C1	C2	C3	105.9	106.1
C1	C2	H2	127.1	126.4
O5	C1	C6	126.4	116.3
C1	O5	C4	109.0	105.9
C1	C6	C7	114.8	113.1
C1	C6	H61	107.7	111.4
C1	C6	H62	106.5	111.4
C3	C2	H2	127.1	127.4
C2	C3	C4	107.5	105.4
C2	C3	H3	126.3	127.1
C4	C3	H3	126.3	127.5
C3	C4	C8	128.8	126.5
C3	C4	O5	107.9	112.0
O5	C4	C8	123.3	121.4
C4	C8	C9	125.1	124.7
C4	C8	H8	117.5	117.7
C7	C6	H61	107.7	108.1
C7	C6	H62	106.5	108.0
C6	C7	H71	109.5	110.6
C6	C7	H72	109.5	111.5
C6	C7	H73	109.4	110.6
H61	C6	H62	113.8	104.3
H71	C7	H72	109.4	108.0
H71	C7	H73	109.5	107.8
H72	C7	H73	109.5	108.1
C9	C8	H8	117.5	117.7
C8	C9	S10	132.1	126.1
C8	C9	C13	124.1	123.9
S10	C9	C13	103.7	110.0
C9	S10	C11	98.1	89.8
C9	C13	N12	109.8	111.1
C9	C13	O28	125.4	123.3
S10	C11	N14	130.1	117.1
S10	C11	N12	105.2	115.3
N12	C11	N14	124.8	127.6
C11	N14	C15	128.6	121.6
C11	N14	HN14	115.7	120.3
C11	N12	C13	123.1	113.7
N12	C13	O28	124.8	125.5
C15	N14	HN14	115.7	118.1
N14	C15	C17	110.6	108.9
N14	C15	C16	109.1	111.4
N14	C15	H15	109.6	103.8
C16	C15	C17	111.3	114.6
C17	C15	H15	107.4	107.2
C15	C17	N21	126.0	126.6
C15	C17	N18	125.3	121.0
C16	C15	H15	108.9	110.3
C15	C16	C26	119.4	119.9
C15	C16	C22	121.6	120.0
C22	C16	C26	119.1	120.0
C16	C26	C25	120.7	119.9
C16	C26	H26	119.7	120.5
C16	C22	C23	120.2	120.0
C16	C22	H22	119.9	120.5
N18	C17	N21	108.8	112.3
C17	N21	N20	106.4	103.8
C17	N18	N19	107.8	107.8
C17	N18	HN18	126.1	132.3
N19	N18	HN18	126.1	119.9
N18	N19	N20	106.9	105.0
N19	N20	N21	110.1	111.1
C23	C22	H22	119.9	119.5
C22	C23	C24	119.9	120.0
C22	C23	H23	120.1	120.1
C24	C23	H23	120.1	119.9
C23	C24	C25	120.0	120.0
C23	C24	F	120.0	120.0
C25	C24	F	119.9	120.0
C24	C25	C26	120.1	120.0
C24	C25	H25	119.9	120.0
C26	C25	H25	119.9	120.0
C25	C26	H26	119.7	119.5

Torsion Angles for VXR

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O5	C1	C2	C6	179.4	180.0
C2	C1	O5	C4	359.9	0.0
C2	C1	C6	C7	253.0	90.0
C2	C1	C6	H61	12.9	211.9
C2	C1	C6	H62	135.4	328.0
C3	C2	C1	H2	180.0	179.9
C1	C2	C3	C4	359.9	0.0
C1	C2	C3	H3	179.8	180.0
C2	C1	O5	C6	180.6	180.0
O5	C1	C2	C3	0.1	360.0
O5	C1	C2	H2	180.2	180.0
O5	C1	C6	C7	73.6	270.0
O5	C1	C6	H61	193.6	32.0
O5	C1	C6	H62	316.0	148.0
C3	C4	O5	C1	0.0	360.0
C1	O5	C4	C8	180.7	179.9
C2	C1	C6	O5	179.3	180.0
C6	C1	C2	C3	180.7	180.0
C6	C1	C2	H2	0.8	0.0
C6	C1	O5	C4	179.3	180.0
C7	C6	C1	H61	240.0	238.0
C7	C6	C1	H62	117.6	122.0
C1	C6	C7	H71	222.1	300.2
C1	C6	C7	H72	342.0	180.0
C1	C6	C7	H73	102.0	59.7
H61	C6	C1	H62	237.6	243.9
C3	C2	C1	O5	0.1	360.0
C3	C2	C1	C6	180.7	180.0
C1	C2	C3	H2	180.0	180.1
C4	C3	C2	H3	180.0	180.0
C2	C3	C4	C8	179.3	180.0
C2	C3	C4	O5	0.1	0.0
H2	C2	C1	O5	180.2	180.0
H2	C2	C1	C6	0.8	0.0
C1	C2	H2	C3	180.0	179.9
H2	C2	C3	C4	179.8	180.0
H2	C2	C3	H3	359.8	359.9
C1	O5	C4	C3	0.0	360.0
C4	C3	C2	H2	179.8	180.0
C2	C3	C4	H3	180.0	180.0
O5	C4	C3	C8	180.8	180.0
C3	C4	C8	C9	35.7	211.7
C3	C4	C8	H8	215.8	30.0
H3	C3	C2	H2	359.8	359.9
C2	C3	H3	C4	180.0	180.1
H3	C3	C4	C8	359.3	0.1
H3	C3	C4	O5	180.1	180.1
C8	C4	C3	H3	359.3	0.1
C3	C4	C8	O5	180.9	180.0
C9	C8	C4	H8	180.0	181.7
C4	C8	C9	S10	358.9	360.0
C4	C8	C9	C13	180.3	180.0
C4	O5	C1	C6	179.3	180.0
O5	C4	C3	H3	180.1	180.1
C3	C4	O5	C8	179.3	180.0
O5	C4	C8	C9	214.8	31.7
O5	C4	C8	H8	34.8	210.0
C1	C6	C7	H61	120.0	123.8
C1	C6	C7	H62	242.4	236.2
H61	C6	C7	H62	122.4	112.3
H71	C7	C6	H72	240.0	120.3
H71	C7	C6	H73	120.0	240.6
H72	C7	C6	H73	240.0	120.3
C1	C6	H61	C7	235.7	235.1
C1	C6	H61	H62	117.8	120.3
C7	C6	H61	H62	242.2	245.2
H61	C6	C7	H71	102.1	176.4
H61	C6	C7	H72	222.0	56.1
H61	C6	C7	H73	342.1	295.8
C1	C6	H62	C7	122.9	124.9
C1	C6	H62	H61	241.5	239.7
C7	C6	H62	H61	118.5	114.8
H62	C6	C7	H71	339.7	64.1
H62	C6	C7	H72	99.6	303.8
H62	C6	C7	H73	219.7	183.5
H71	C7	C6	H61	102.1	176.4
H71	C7	C6	H62	339.7	64.1
C6	C7	H71	H72	120.0	237.7
C6	C7	H71	H73	240.0	121.1
H72	C7	H71	H73	120.0	243.4
H72	C7	C6	H61	222.0	56.1
H72	C7	C6	H62	99.6	303.8
C6	C7	H72	H71	240.0	121.8
C6	C7	H72	H73	120.0	238.2
H71	C7	H72	H73	240.0	116.4
H73	C7	C6	H61	342.1	295.8
H73	C7	C6	H62	219.7	183.5
C6	C7	H73	H71	120.0	238.9
C6	C7	H73	H72	240.0	122.3
H71	C7	H73	H72	120.0	243.4
C4	C8	C9	H8	180.0	178.3
S10	C9	C8	C13	178.7	180.0
C8	C9	S10	C11	180.8	180.0
C8	C9	C13	N12	179.6	180.0
C8	C9	C13	O28	358.3	360.0
C4	C8	H8	C9	180.0	181.5
H8	C8	C9	S10	178.9	181.7
H8	C8	C9	C13	0.2	1.7
S10	C9	C8	H8	178.9	181.7
C8	C9	S10	C13	181.1	180.0
S10	C9	C13	N12	0.6	360.0
S10	C9	C13	O28	179.4	180.0
C9	S10	C11	N14	180.7	180.1
C9	S10	C11	N12	360.0	0.0
C13	C9	C8	H8	0.2	1.7
C8	C9	C13	S10	179.0	180.0
C13	C9	S10	C11	359.6	0.0
C11	N12	C13	C9	359.2	0.0
N12	C13	C9	O28	181.3	180.0
C11	S10	C9	C13	359.6	0.0
N12	C11	S10	N14	179.3	179.9
S10	C11	N14	C15	0.9	180.0
S10	C11	N14	HN14	180.9	359.9
S10	C11	N12	C13	0.5	360.0
S10	C11	N14	N12	179.2	179.9
N14	C11	N12	C13	179.9	179.9
C15	N14	C11	HN14	180.0	180.2
C11	N14	C15	C17	191.6	216.0
C11	N14	C15	C16	68.9	88.6
C11	N14	C15	H15	309.7	329.9
C9	C13	N12	C11	359.2	0.0
S10	C11	N12	N14	180.6	180.1
N12	C11	N14	C15	181.7	0.1
N12	C11	N14	HN14	1.7	179.9
C11	N12	C13	O28	180.5	180.0
C9	C13	N12	O28	178.7	180.0
C13	N12	C11	N14	179.9	179.9
C9	C13	O28	N12	181.5	180.0
C11	N14	C15	HN14	180.0	179.8
C16	C15	N14	C17	237.3	232.6
C17	C15	N14	H15	241.9	246.1
N14	C15	C17	N21	121.0	291.7
N14	C15	C17	N18	301.3	111.7
C16	C15	N14	H15	119.1	118.7
N14	C15	C16	C26	242.3	30.0
N14	C15	C16	C22	61.9	210.1
C11	N14	HN14	C15	180.0	180.2
HN14	N14	C15	C17	11.6	36.2
HN14	N14	C15	C16	248.9	268.8
HN14	N14	C15	H15	129.7	150.1
C17	C15	N14	HN14	11.6	36.2
N14	C15	C17	C16	238.5	234.5
N14	C15	C17	H15	119.5	111.7
C16	C15	C17	H15	241.0	237.3
C17	C15	C16	C26	120.0	265.8
C17	C15	C16	C22	299.5	85.9
N18	C17	C15	N21	180.3	180.0
C15	C17	N21	N20	180.2	180.0
C15	C17	N18	N19	179.7	180.0
C15	C17	N18	HN18	359.8	0.0
C16	C15	N14	HN14	248.9	268.8
N14	C15	C16	C17	122.3	124.2
N14	C15	C16	H15	240.4	245.2
C17	C15	C16	H15	118.1	121.0
C16	C15	C17	N21	242.5	57.2
C16	C15	C17	N18	62.7	237.2
C22	C16	C15	C26	179.6	180.1
C15	C16	C26	C25	179.7	180.0
C15	C16	C26	H26	359.7	0.0
C15	C16	C22	C23	180.2	180.0
C15	C16	C22	H22	0.2	359.9
H15	C15	N14	HN14	129.7	150.1
N14	C15	H15	C17	239.9	244.9
N14	C15	H15	C16	119.3	119.5
C16	C15	H15	C17	120.6	125.4
H15	C15	C17	N21	1.5	180.0
H15	C15	C17	N18	181.8	360.0
H15	C15	C16	C26	1.9	144.8
H15	C15	C16	C22	181.4	324.9
C26	C16	C15	C17	120.0	265.8
C26	C16	C15	H15	1.9	144.8
C15	C16	C26	C22	179.6	180.1
C26	C16	C22	C23	359.8	0.1
C26	C16	C22	H22	179.7	180.0
C24	C25	C26	C16	0.1	0.0
C16	C26	C25	H25	180.1	180.0
C25	C26	C16	H26	180.0	180.0
C22	C16	C15	C17	299.5	85.9
C22	C16	C15	H15	181.4	324.9
C15	C16	C22	C26	180.4	179.9
C22	C16	C26	C25	0.2	359.9
C22	C16	C26	H26	180.1	179.9
C23	C22	C16	H22	180.0	180.1
C16	C22	C23	C24	0.1	360.0
C16	C22	C23	H23	180.1	179.9
N21	C17	C15	H15	1.5	180.0
C15	C17	N21	N18	180.2	180.0
N21	C17	N18	N19	360.0	360.0
N21	C17	N18	HN18	180.0	180.0
N19	N20	N21	C17	0.0	0.0
N18	C17	C15	H15	181.8	360.0
C15	C17	N18	N21	179.8	180.0
N18	C17	N21	N20	0.0	0.0
N19	N18	C17	HN18	180.0	179.9
C17	N18	N19	N20	0.0	0.0
N19	N18	C17	N21	360.0	360.0
C17	N18	N19	HN18	180.0	180.1
N18	N19	N20	N21	360.0	360.0
HN18	N18	C17	N21	180.0	180.0
C17	N18	HN18	N19	180.0	179.9
HN18	N18	N19	N20	180.0	180.0
C17	N21	N20	N19	0.0	0.0
N20	N19	N18	HN18	180.0	180.0
C23	C22	C16	C26	359.8	0.1
C16	C22	C23	H22	180.0	179.9
C24	C23	C22	H23	180.0	180.0
C22	C23	C24	C25	0.1	0.0
C22	C23	C24	F	180.3	180.0
H22	C22	C16	C26	179.7	180.0
C16	C22	H22	C23	180.0	180.1
H22	C22	C23	C24	180.1	180.0
H22	C22	C23	H23	0.1	0.0
C24	C23	C22	H22	180.1	180.0
C22	C23	C24	H23	180.0	180.0
C25	C24	C23	F	179.8	180.0
C23	C24	C25	C26	359.8	0.0
C23	C24	C25	H25	179.8	180.0
H23	C23	C22	H22	0.1	0.0
C22	C23	H23	C24	180.0	180.0
H23	C23	C24	C25	180.1	180.0
H23	C23	C24	F	0.3	0.0
C16	C26	C25	C24	0.1	0.0
C25	C24	C23	H23	180.1	180.0
C23	C24	C25	F	180.2	180.0
C26	C25	C24	H25	180.0	180.0
C24	C25	C26	H26	180.1	180.0
F	C24	C23	H23	0.3	0.0
C23	C24	F	C25	179.8	180.0
F	C24	C25	C26	179.6	180.0
F	C24	C25	H25	359.6	0.0
C16	C26	C25	H26	180.0	180.0
C26	C25	C24	F	179.6	180.0
C24	C25	C26	H25	180.0	180.0
H25	C25	C24	F	359.6	0.0
C24	C25	H25	C26	180.0	180.0
H25	C25	C26	H26	0.1	0.0
C16	C26	H26	C25	180.0	180.0
H26	C26	C25	H25	0.1	0.0