PDB Chemical Component VXQ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for VXQ
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CB |
1.498 |
1.469 |
| C5 |
CM |
1.573 |
1.547 |
| C5 |
CE1 |
1.494 |
1.516 |
| CB |
CG |
1.490 |
1.507 |
| OE |
CM |
1.442 |
1.438 |
| OE |
CZ |
1.389 |
1.361 |
| CG |
CD1 |
1.354 |
1.384 |
| CG |
CD2 |
1.365 |
1.383 |
| CZ |
CE1 |
1.352 |
1.389 |
| CZ |
CE2 |
1.378 |
1.393 |
| CD1 |
CE1 |
1.375 |
1.377 |
| CD2 |
CE2 |
1.368 |
1.380 |
| N |
HN |
1.000 |
1.009 |
| N |
HNA |
1.000 |
1.010 |
| C5 |
H5 |
1.100 |
1.090 |
| C5 |
H5A |
1.100 |
1.090 |
| CB |
HB |
1.100 |
1.090 |
| CB |
HBA |
1.100 |
1.091 |
| CM |
HM |
1.100 |
1.090 |
| CM |
HMA |
1.100 |
1.090 |
| CD1 |
HD1 |
1.080 |
1.080 |
| CD2 |
HD2 |
1.080 |
1.080 |
| CE2 |
HE2 |
1.080 |
1.080 |
Bond Angles for VXQ
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N |
CB |
CG |
104.8 |
109.5 |
| CB |
N |
HN |
109.5 |
111.0 |
| CB |
N |
HNA |
109.5 |
111.0 |
| N |
CB |
HB |
110.6 |
109.5 |
| N |
CB |
HBA |
110.6 |
109.5 |
| CM |
C5 |
CE1 |
92.2 |
102.0 |
| C5 |
CM |
OE |
114.9 |
102.8 |
| CM |
C5 |
H5 |
113.6 |
110.9 |
| CM |
C5 |
H5A |
113.6 |
110.9 |
| C5 |
CM |
HM |
108.1 |
110.8 |
| C5 |
CM |
HMA |
108.1 |
110.8 |
| C5 |
CE1 |
CZ |
113.6 |
107.0 |
| C5 |
CE1 |
CD1 |
128.8 |
132.2 |
| CE1 |
C5 |
H5 |
113.6 |
111.0 |
| CE1 |
C5 |
H5A |
113.6 |
111.0 |
| CB |
CG |
CD1 |
122.5 |
120.1 |
| CB |
CG |
CD2 |
116.6 |
120.2 |
| CG |
CB |
HB |
110.6 |
109.5 |
| CG |
CB |
HBA |
110.6 |
109.4 |
| CM |
OE |
CZ |
98.0 |
109.3 |
| OE |
CM |
HM |
108.1 |
110.7 |
| OE |
CM |
HMA |
108.1 |
110.8 |
| OE |
CZ |
CE1 |
115.0 |
111.2 |
| OE |
CZ |
CE2 |
121.8 |
129.9 |
| CD1 |
CG |
CD2 |
120.3 |
119.7 |
| CG |
CD1 |
CE1 |
120.8 |
120.0 |
| CG |
CD1 |
HD1 |
119.6 |
120.0 |
| CG |
CD2 |
CE2 |
120.5 |
120.4 |
| CG |
CD2 |
HD2 |
119.7 |
119.8 |
| CE1 |
CZ |
CE2 |
123.1 |
118.9 |
| CZ |
CE1 |
CD1 |
117.6 |
120.8 |
| CZ |
CE2 |
CD2 |
117.5 |
120.2 |
| CZ |
CE2 |
HE2 |
121.3 |
119.9 |
| CE1 |
CD1 |
HD1 |
119.6 |
120.0 |
| CE2 |
CD2 |
HD2 |
119.8 |
119.8 |
| CD2 |
CE2 |
HE2 |
121.3 |
119.8 |
| HN |
N |
HNA |
109.5 |
111.0 |
| H5 |
C5 |
H5A |
109.5 |
110.8 |
| HB |
CB |
HBA |
109.5 |
109.5 |
| HM |
CM |
HMA |
109.5 |
110.8 |
Torsion Angles for VXQ
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N |
CB |
CG |
CD1 |
137.1 |
90.0 |
| N |
CB |
CG |
CD2 |
324.9 |
270.0 |
| CG |
CB |
N |
HB |
240.7 |
239.9 |
| CG |
CB |
N |
HBA |
119.3 |
119.9 |
| HN |
N |
CB |
HNA |
240.0 |
236.0 |
| HB |
CB |
N |
HBA |
238.5 |
240.0 |
| CM |
C5 |
CE1 |
CZ |
349.5 |
15.7 |
| CM |
C5 |
CE1 |
CD1 |
168.0 |
195.8 |
| CE1 |
C5 |
CM |
H5 |
243.0 |
241.8 |
| CE1 |
C5 |
CM |
H5A |
117.0 |
118.2 |
| C5 |
CM |
OE |
CZ |
333.9 |
27.5 |
| OE |
CM |
C5 |
HM |
239.2 |
241.7 |
| OE |
CM |
C5 |
HMA |
120.8 |
118.3 |
| H5 |
C5 |
CM |
H5A |
234.0 |
236.4 |
| HM |
CM |
C5 |
HMA |
241.5 |
236.6 |
| CE1 |
C5 |
CM |
OE |
23.0 |
334.7 |
| CM |
C5 |
CE1 |
H5 |
117.0 |
118.1 |
| CM |
C5 |
CE1 |
H5A |
243.0 |
241.8 |
| CE1 |
C5 |
CM |
HM |
143.8 |
93.0 |
| CE1 |
C5 |
CM |
HMA |
262.2 |
216.3 |
| OE |
CZ |
CE1 |
C5 |
355.6 |
0.6 |
| CG |
CD1 |
CE1 |
C5 |
186.7 |
179.6 |
| C5 |
CE1 |
CZ |
CE2 |
176.8 |
180.6 |
| CZ |
CE1 |
C5 |
CD1 |
181.5 |
179.9 |
| C5 |
CE1 |
CD1 |
HD1 |
6.7 |
359.5 |
| H5 |
C5 |
CE1 |
H5A |
126.0 |
123.7 |
| CG |
CB |
N |
HN |
180.0 |
180.0 |
| CG |
CB |
N |
HNA |
300.0 |
303.9 |
| N |
CB |
CG |
HB |
119.2 |
120.0 |
| N |
CB |
CG |
HBA |
240.7 |
240.0 |
| CD1 |
CG |
CB |
CD2 |
172.2 |
180.0 |
| CB |
CG |
CD1 |
CE1 |
182.7 |
179.9 |
| CB |
CG |
CD1 |
HD1 |
2.7 |
360.0 |
| CB |
CG |
CD2 |
CE2 |
174.7 |
180.2 |
| CB |
CG |
CD2 |
HD2 |
354.7 |
0.2 |
| HB |
CB |
CG |
HBA |
121.5 |
120.0 |
| OE |
CM |
C5 |
CE1 |
23.0 |
334.7 |
| OE |
CM |
C5 |
H5 |
140.0 |
92.9 |
| OE |
CM |
C5 |
H5A |
266.0 |
216.5 |
| C5 |
CM |
OE |
HM |
120.8 |
118.3 |
| C5 |
CM |
OE |
HMA |
239.2 |
241.7 |
| CM |
OE |
CZ |
CE1 |
18.1 |
341.4 |
| CM |
OE |
CZ |
CE2 |
196.9 |
161.5 |
| HM |
CM |
OE |
HMA |
118.4 |
123.3 |
| C5 |
CE1 |
CZ |
OE |
355.6 |
0.6 |
| CZ |
OE |
CM |
HM |
213.2 |
269.2 |
| CZ |
OE |
CM |
HMA |
94.7 |
145.9 |
| CE1 |
CZ |
OE |
CE2 |
181.2 |
179.9 |
| OE |
CZ |
CE1 |
CD1 |
176.9 |
180.5 |
| OE |
CZ |
CE2 |
CD2 |
180.2 |
179.6 |
| OE |
CZ |
CE2 |
HE2 |
0.3 |
359.5 |
| C5 |
CE1 |
CD1 |
CG |
186.7 |
179.6 |
| CB |
CG |
CD1 |
CD2 |
188.1 |
180.0 |
| CD1 |
CG |
CB |
HB |
17.8 |
330.0 |
| CD1 |
CG |
CB |
HBA |
256.4 |
210.0 |
| CD1 |
CG |
CD2 |
CE2 |
2.3 |
0.1 |
| CD1 |
CG |
CD2 |
HD2 |
182.4 |
180.2 |
| CZ |
CE1 |
CD1 |
CG |
5.1 |
359.7 |
| CE1 |
CD1 |
CG |
HD1 |
180.0 |
180.0 |
| CB |
CG |
CD2 |
CD1 |
172.4 |
180.0 |
| CD2 |
CG |
CB |
HB |
205.7 |
149.9 |
| CD2 |
CG |
CB |
HBA |
84.2 |
29.9 |
| CD2 |
CG |
CD1 |
CE1 |
354.6 |
360.0 |
| CD2 |
CG |
CD1 |
HD1 |
174.6 |
180.0 |
| CZ |
CE2 |
CD2 |
CG |
0.8 |
0.1 |
| CE2 |
CD2 |
CG |
HD2 |
180.0 |
180.0 |
| CG |
CD2 |
CE2 |
HE2 |
180.8 |
180.1 |
| C5 |
CE1 |
CZ |
CD1 |
178.6 |
180.1 |
| CZ |
CE1 |
C5 |
H5 |
232.5 |
257.5 |
| CZ |
CE1 |
C5 |
H5A |
106.5 |
133.8 |
| OE |
CZ |
CE1 |
CE2 |
178.8 |
180.1 |
| CG |
CD1 |
CE1 |
CZ |
5.1 |
359.7 |
| CE1 |
CZ |
CE2 |
CD2 |
359.0 |
359.6 |
| CE1 |
CZ |
CE2 |
HE2 |
179.0 |
179.6 |
| CZ |
CE1 |
CD1 |
HD1 |
185.1 |
179.7 |
| OE |
CZ |
CE2 |
CE1 |
181.3 |
179.9 |
| CG |
CD2 |
CE2 |
CZ |
0.8 |
0.1 |
| CE2 |
CZ |
CE1 |
CD1 |
358.1 |
0.5 |
| CZ |
CE2 |
CD2 |
HD2 |
180.8 |
180.0 |
| CD2 |
CE2 |
CZ |
HE2 |
180.0 |
180.0 |
| C5 |
CE1 |
CD1 |
CZ |
181.6 |
179.9 |
| CD1 |
CE1 |
C5 |
H5 |
51.0 |
77.6 |
| CD1 |
CE1 |
C5 |
H5A |
285.0 |
313.9 |
| CE1 |
CD1 |
CG |
CD2 |
354.6 |
360.0 |
| CG |
CD1 |
CE1 |
HD1 |
180.0 |
180.0 |
| CD1 |
CE1 |
CZ |
CE2 |
358.1 |
0.5 |
| CG |
CD2 |
CE2 |
HD2 |
180.0 |
180.0 |
| CZ |
CE2 |
CD2 |
HE2 |
180.0 |
180.0 |
| HN |
N |
CB |
CG |
180.0 |
180.0 |
| CB |
N |
HN |
HNA |
120.0 |
123.9 |
| HN |
N |
CB |
HB |
299.3 |
300.0 |
| HN |
N |
CB |
HBA |
60.7 |
60.0 |
| HNA |
N |
CB |
CG |
300.0 |
303.9 |
| CB |
N |
HNA |
HN |
240.0 |
236.1 |
| HNA |
N |
CB |
HB |
59.3 |
64.0 |
| HNA |
N |
CB |
HBA |
180.7 |
184.0 |
| CM |
C5 |
H5 |
CE1 |
256.3 |
247.4 |
| H5 |
C5 |
CM |
OE |
140.0 |
92.9 |
| CM |
C5 |
H5 |
H5A |
128.2 |
123.7 |
| H5 |
C5 |
CM |
HM |
260.8 |
211.1 |
| H5 |
C5 |
CM |
HMA |
19.2 |
334.5 |
| H5 |
C5 |
CE1 |
CZ |
232.5 |
257.5 |
| H5 |
C5 |
CE1 |
CD1 |
51.0 |
77.6 |
| CE1 |
C5 |
H5 |
H5A |
231.8 |
236.2 |
| CM |
C5 |
H5A |
CE1 |
103.7 |
112.6 |
| H5A |
C5 |
CM |
OE |
266.0 |
216.5 |
| CM |
C5 |
H5A |
H5 |
231.8 |
236.3 |
| H5A |
C5 |
CM |
HM |
26.8 |
334.8 |
| H5A |
C5 |
CM |
HMA |
145.3 |
98.1 |
| H5A |
C5 |
CE1 |
CZ |
106.5 |
133.8 |
| H5A |
C5 |
CE1 |
CD1 |
285.0 |
313.9 |
| CE1 |
C5 |
H5A |
H5 |
128.2 |
123.8 |
| N |
CB |
HB |
CG |
244.3 |
240.0 |
| HB |
CB |
N |
HN |
299.3 |
300.0 |
| HB |
CB |
N |
HNA |
59.3 |
64.0 |
| N |
CB |
HB |
HBA |
122.1 |
120.0 |
| HB |
CB |
CG |
CD1 |
17.8 |
330.0 |
| HB |
CB |
CG |
CD2 |
205.7 |
149.9 |
| CG |
CB |
HB |
HBA |
237.8 |
240.0 |
| N |
CB |
HBA |
CG |
115.7 |
120.0 |
| HBA |
CB |
N |
HN |
60.7 |
60.0 |
| HBA |
CB |
N |
HNA |
180.7 |
184.0 |
| N |
CB |
HBA |
HB |
237.9 |
240.0 |
| HBA |
CB |
CG |
CD1 |
256.4 |
210.0 |
| HBA |
CB |
CG |
CD2 |
84.2 |
29.9 |
| CG |
CB |
HBA |
HB |
122.2 |
120.0 |
| HM |
CM |
C5 |
CE1 |
143.8 |
93.0 |
| C5 |
CM |
HM |
OE |
235.1 |
246.7 |
| HM |
CM |
C5 |
H5 |
260.8 |
211.1 |
| HM |
CM |
C5 |
H5A |
26.8 |
334.8 |
| C5 |
CM |
HM |
HMA |
117.6 |
123.4 |
| HM |
CM |
OE |
CZ |
213.2 |
269.2 |
| OE |
CM |
HM |
HMA |
242.5 |
236.7 |
| HMA |
CM |
C5 |
CE1 |
262.2 |
216.3 |
| C5 |
CM |
HMA |
OE |
124.9 |
113.4 |
| HMA |
CM |
C5 |
H5 |
19.2 |
334.5 |
| HMA |
CM |
C5 |
H5A |
145.3 |
98.1 |
| C5 |
CM |
HMA |
HM |
242.5 |
236.6 |
| HMA |
CM |
OE |
CZ |
94.7 |
145.9 |
| OE |
CM |
HMA |
HM |
117.5 |
123.3 |
| HD1 |
CD1 |
CG |
CD2 |
174.6 |
180.0 |
| CG |
CD1 |
HD1 |
CE1 |
180.0 |
180.0 |
| CG |
CD2 |
HD2 |
CE2 |
180.0 |
180.0 |
| HD2 |
CD2 |
CE2 |
HE2 |
0.8 |
0.1 |
| CZ |
CE2 |
HE2 |
CD2 |
180.0 |
180.0 |
| HE2 |
CE2 |
CD2 |
HD2 |
0.8 |
0.1 |