PDB Chemical Component VX7
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for VX7
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C27 |
C26 |
1.553 |
1.530 |
O25 |
C08 |
1.366 |
1.359 |
C26 |
C28 |
1.553 |
1.530 |
C26 |
C07 |
1.453 |
1.507 |
C26 |
C29 |
1.551 |
1.530 |
O13 |
C12 |
1.233 |
1.217 |
C08 |
C07 |
1.417 |
1.388 |
C08 |
C09 |
1.386 |
1.386 |
C07 |
C06 |
1.407 |
1.381 |
C09 |
C10 |
1.390 |
1.388 |
C15 |
N16 |
1.409 |
1.340 |
C15 |
C14 |
1.404 |
1.379 |
C12 |
C14 |
1.417 |
1.471 |
C12 |
N11 |
1.374 |
1.348 |
C06 |
C05 |
1.412 |
1.381 |
N16 |
C17 |
1.343 |
1.378 |
C10 |
N11 |
1.351 |
1.398 |
C10 |
C05 |
1.427 |
1.391 |
C14 |
C23 |
1.409 |
1.472 |
C05 |
C02 |
1.454 |
1.507 |
C04 |
C02 |
1.553 |
1.530 |
C17 |
C18 |
1.396 |
1.392 |
C17 |
C22 |
1.398 |
1.405 |
C02 |
C03 |
1.549 |
1.530 |
C02 |
C01 |
1.553 |
1.530 |
C23 |
C22 |
1.401 |
1.475 |
C23 |
O24 |
1.230 |
1.218 |
C18 |
C19 |
1.397 |
1.377 |
C22 |
C21 |
1.404 |
1.396 |
C19 |
C20 |
1.392 |
1.388 |
C21 |
C20 |
1.394 |
1.377 |
C21 |
H1 |
1.080 |
1.080 |
C20 |
H2 |
1.080 |
1.080 |
C19 |
H3 |
1.080 |
1.080 |
C18 |
H4 |
1.080 |
1.080 |
C15 |
H5 |
1.080 |
1.080 |
N11 |
H7 |
1.000 |
0.970 |
C09 |
H8 |
1.080 |
1.080 |
O25 |
H9 |
0.950 |
0.966 |
C28 |
H10 |
1.100 |
1.091 |
C28 |
H11 |
1.100 |
1.090 |
C28 |
H12 |
1.100 |
1.090 |
C29 |
H13 |
1.100 |
1.090 |
C29 |
H14 |
1.100 |
1.090 |
C29 |
H15 |
1.100 |
1.090 |
C27 |
H16 |
1.100 |
1.090 |
C27 |
H17 |
1.100 |
1.090 |
C27 |
H18 |
1.100 |
1.090 |
C06 |
H19 |
1.080 |
1.080 |
C03 |
H20 |
1.100 |
1.091 |
C03 |
H21 |
1.100 |
1.090 |
C03 |
H22 |
1.100 |
1.090 |
C04 |
H23 |
1.100 |
1.090 |
C04 |
H24 |
1.100 |
1.090 |
C04 |
H25 |
1.100 |
1.091 |
C01 |
H26 |
1.100 |
1.090 |
C01 |
H27 |
1.100 |
1.090 |
C01 |
H28 |
1.100 |
1.090 |
N16 |
H29 |
1.000 |
0.970 |
Bond Angles for VX7
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O25 |
C08 |
C07 |
120.8 |
120.0 |
C28 |
C26 |
C29 |
105.9 |
109.4 |
C26 |
C28 |
H10 |
109.5 |
109.5 |
C26 |
C28 |
H11 |
109.5 |
109.5 |
C26 |
C28 |
H12 |
109.4 |
109.4 |
C26 |
C07 |
C06 |
121.8 |
120.0 |
C26 |
C29 |
H13 |
109.5 |
109.5 |
C26 |
C29 |
H14 |
109.4 |
109.5 |
C26 |
C29 |
H15 |
109.5 |
109.6 |
O13 |
C12 |
N11 |
123.1 |
120.0 |
C08 |
C07 |
C06 |
116.0 |
120.1 |
C08 |
C09 |
H8 |
119.5 |
120.1 |
C07 |
C06 |
C05 |
124.4 |
120.2 |
C07 |
C06 |
H19 |
117.8 |
120.0 |
C09 |
C10 |
C05 |
120.5 |
119.9 |
C15 |
N16 |
H29 |
119.5 |
118.6 |
C14 |
C15 |
H5 |
119.5 |
118.9 |
C12 |
N11 |
H7 |
119.6 |
120.0 |
C10 |
C05 |
C06 |
116.5 |
120.0 |
C06 |
C05 |
C02 |
120.2 |
120.1 |
C05 |
C06 |
H19 |
117.8 |
119.9 |
C10 |
N11 |
H7 |
119.6 |
120.0 |
C10 |
C05 |
C02 |
123.3 |
119.9 |
C05 |
C02 |
C03 |
114.8 |
109.5 |
C05 |
C02 |
C01 |
109.7 |
109.5 |
C04 |
C02 |
C01 |
111.4 |
109.5 |
C17 |
C18 |
H4 |
119.8 |
120.0 |
C03 |
C02 |
C01 |
105.7 |
109.5 |
C02 |
C03 |
H20 |
109.5 |
109.5 |
C02 |
C03 |
H21 |
109.5 |
109.5 |
C02 |
C03 |
H22 |
109.5 |
109.4 |
C02 |
C01 |
H26 |
109.5 |
109.5 |
C02 |
C01 |
H27 |
109.5 |
109.5 |
C02 |
C01 |
H28 |
109.5 |
109.4 |
C23 |
C22 |
C21 |
120.9 |
121.1 |
C18 |
C19 |
H3 |
120.1 |
119.7 |
C22 |
C21 |
C20 |
120.7 |
119.6 |
C22 |
C21 |
H1 |
119.7 |
120.2 |
C19 |
C20 |
H2 |
120.1 |
119.9 |
C20 |
C21 |
H1 |
119.6 |
120.2 |
C21 |
C20 |
H2 |
120.0 |
119.8 |
H10 |
C28 |
H11 |
109.5 |
109.5 |
H10 |
C28 |
H12 |
109.5 |
109.5 |
H11 |
C28 |
H12 |
109.5 |
109.4 |
H13 |
C29 |
H14 |
109.5 |
109.4 |
H13 |
C29 |
H15 |
109.4 |
109.5 |
H14 |
C29 |
H15 |
109.5 |
109.5 |
H16 |
C27 |
H17 |
109.5 |
109.4 |
H16 |
C27 |
H18 |
109.4 |
109.5 |
H17 |
C27 |
H18 |
109.5 |
109.5 |
H20 |
C03 |
H21 |
109.4 |
109.5 |
H20 |
C03 |
H22 |
109.5 |
109.4 |
H21 |
C03 |
H22 |
109.4 |
109.5 |
H23 |
C04 |
H24 |
109.4 |
109.5 |
H23 |
C04 |
H25 |
109.5 |
109.5 |
H24 |
C04 |
H25 |
109.5 |
109.5 |
H26 |
C01 |
H27 |
109.4 |
109.5 |
H26 |
C01 |
H28 |
109.5 |
109.5 |
H27 |
C01 |
H28 |
109.5 |
109.5 |
Torsion Angles for VX7
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C27 |
C26 |
C28 |
H10 |
180.0 |
180.0 |
C27 |
C26 |
C28 |
H11 |
300.0 |
300.0 |
C27 |
C26 |
C28 |
H12 |
60.0 |
60.0 |
C27 |
C26 |
C07 |
C06 |
241.0 |
240.1 |
C27 |
C26 |
C29 |
H13 |
180.0 |
180.0 |
C27 |
C26 |
C29 |
H14 |
300.0 |
299.9 |
C27 |
C26 |
C29 |
H15 |
60.0 |
60.0 |
O25 |
C08 |
C07 |
C06 |
180.1 |
180.0 |
O25 |
C08 |
C09 |
H8 |
0.5 |
360.0 |
C28 |
C26 |
C07 |
C06 |
118.8 |
0.0 |
C28 |
C26 |
C29 |
H13 |
298.1 |
60.1 |
C28 |
C26 |
C29 |
H14 |
58.1 |
180.0 |
C28 |
C26 |
C29 |
H15 |
178.1 |
300.0 |
H10 |
C28 |
C26 |
H11 |
240.0 |
239.9 |
H10 |
C28 |
C26 |
H12 |
120.0 |
120.0 |
H11 |
C28 |
C26 |
H12 |
240.0 |
240.0 |
C08 |
C07 |
C26 |
C06 |
180.0 |
179.9 |
C26 |
C07 |
C06 |
C05 |
179.8 |
179.7 |
C26 |
C07 |
C06 |
H19 |
359.8 |
360.0 |
C29 |
C26 |
C28 |
H10 |
65.5 |
299.9 |
C29 |
C26 |
C28 |
H11 |
185.5 |
60.0 |
C29 |
C26 |
C28 |
H12 |
305.5 |
179.9 |
C29 |
C26 |
C07 |
C06 |
360.0 |
120.1 |
H13 |
C29 |
C26 |
H14 |
240.0 |
240.1 |
H13 |
C29 |
C26 |
H15 |
120.0 |
120.0 |
H14 |
C29 |
C26 |
H15 |
240.0 |
240.0 |
O13 |
C12 |
N11 |
H7 |
178.1 |
186.5 |
C26 |
C07 |
C08 |
C06 |
180.0 |
180.1 |
C07 |
C08 |
C09 |
H8 |
180.7 |
180.0 |
C08 |
C07 |
C06 |
C05 |
359.8 |
359.8 |
C08 |
C07 |
C06 |
H19 |
179.8 |
180.0 |
C08 |
C09 |
C10 |
C05 |
359.1 |
0.2 |
C10 |
C05 |
C06 |
C07 |
0.1 |
0.5 |
C07 |
C06 |
C05 |
C02 |
179.9 |
180.2 |
C05 |
C06 |
C07 |
H19 |
180.0 |
179.8 |
C09 |
C10 |
C05 |
C06 |
0.5 |
359.5 |
C09 |
C10 |
N11 |
H7 |
116.2 |
196.1 |
C09 |
C10 |
C05 |
C02 |
180.6 |
179.8 |
C14 |
C15 |
N16 |
H29 |
180.6 |
179.6 |
C12 |
C14 |
C15 |
H5 |
0.9 |
359.6 |
C10 |
N11 |
C12 |
H7 |
180.0 |
180.0 |
C07 |
C06 |
C05 |
H19 |
180.0 |
180.2 |
C10 |
C05 |
C06 |
C02 |
180.1 |
180.2 |
C06 |
C05 |
C02 |
C03 |
6.4 |
354.2 |
C06 |
C05 |
C02 |
C01 |
247.6 |
234.2 |
N16 |
C17 |
C18 |
H4 |
0.0 |
0.0 |
C12 |
N11 |
C10 |
H7 |
180.0 |
180.0 |
C07 |
C06 |
C05 |
C10 |
0.1 |
0.5 |
C06 |
C05 |
C10 |
C02 |
179.9 |
179.8 |
C10 |
C05 |
C06 |
H19 |
180.1 |
180.2 |
C05 |
C10 |
N11 |
H7 |
297.5 |
15.9 |
C10 |
C05 |
C02 |
C03 |
186.3 |
174.0 |
C10 |
C05 |
C02 |
C01 |
67.5 |
54.0 |
C10 |
C05 |
C02 |
C06 |
179.9 |
179.8 |
C02 |
C05 |
C06 |
H19 |
359.9 |
0.0 |
C04 |
C02 |
C05 |
C01 |
236.9 |
240.0 |
C03 |
C02 |
C05 |
C01 |
118.8 |
120.0 |
C05 |
C02 |
C03 |
H20 |
180.0 |
59.9 |
C05 |
C02 |
C03 |
H21 |
300.0 |
180.0 |
C05 |
C02 |
C03 |
H22 |
60.0 |
300.0 |
C05 |
C02 |
C01 |
H26 |
180.0 |
66.0 |
C05 |
C02 |
C01 |
H27 |
300.0 |
186.0 |
C05 |
C02 |
C01 |
H28 |
60.0 |
306.0 |
C05 |
C02 |
C04 |
C01 |
122.0 |
120.1 |
C03 |
C02 |
C04 |
C01 |
246.1 |
240.0 |
C04 |
C02 |
C03 |
H20 |
58.9 |
300.0 |
C04 |
C02 |
C03 |
H21 |
178.9 |
60.0 |
C04 |
C02 |
C03 |
H22 |
298.9 |
180.0 |
C04 |
C02 |
C01 |
H26 |
302.4 |
186.0 |
C04 |
C02 |
C01 |
H27 |
62.3 |
306.1 |
C04 |
C02 |
C01 |
H28 |
182.3 |
66.1 |
C17 |
C18 |
C19 |
H3 |
179.8 |
180.0 |
C17 |
C22 |
C21 |
H1 |
180.0 |
180.0 |
C05 |
C02 |
C03 |
C01 |
239.0 |
240.0 |
C04 |
C02 |
C03 |
C01 |
117.9 |
120.0 |
C03 |
C02 |
C01 |
H26 |
55.8 |
306.0 |
C03 |
C02 |
C01 |
H27 |
175.7 |
66.0 |
C03 |
C02 |
C01 |
H28 |
295.7 |
186.0 |
H20 |
C03 |
C02 |
H21 |
240.0 |
239.9 |
H20 |
C03 |
C02 |
H22 |
120.1 |
119.9 |
H21 |
C03 |
C02 |
H22 |
240.0 |
240.0 |
C05 |
C02 |
C01 |
C03 |
124.3 |
120.0 |
C01 |
C02 |
C03 |
H20 |
301.0 |
180.0 |
C01 |
C02 |
C03 |
H21 |
61.0 |
300.0 |
C01 |
C02 |
C03 |
H22 |
181.0 |
60.0 |
H26 |
C01 |
C02 |
H27 |
240.0 |
240.0 |
H26 |
C01 |
C02 |
H28 |
120.0 |
120.0 |
H27 |
C01 |
C02 |
H28 |
240.0 |
240.0 |
C23 |
C22 |
C21 |
C20 |
179.8 |
180.0 |
C23 |
C22 |
C21 |
H1 |
359.9 |
0.0 |
C18 |
C19 |
C20 |
H2 |
180.1 |
180.0 |
C20 |
C21 |
C22 |
H1 |
180.0 |
180.0 |
C22 |
C21 |
C20 |
H2 |
180.0 |
180.1 |
C19 |
C20 |
C21 |
H1 |
180.0 |
180.0 |
C21 |
C20 |
C19 |
H2 |
180.0 |
180.0 |
C22 |
C21 |
C20 |
H1 |
180.0 |
180.0 |
C19 |
C20 |
C21 |
H2 |
180.0 |
180.0 |
C22 |
C21 |
H1 |
C20 |
180.0 |
180.0 |
H1 |
C21 |
C20 |
H2 |
0.0 |
0.1 |
H2 |
C20 |
C21 |
H1 |
0.0 |
0.1 |
H3 |
C19 |
C20 |
H2 |
0.1 |
360.0 |
H4 |
C18 |
C19 |
H3 |
359.8 |
360.0 |
H5 |
C15 |
N16 |
H29 |
0.7 |
0.0 |
H8 |
C09 |
C10 |
C05 |
179.1 |
180.2 |
H9 |
O25 |
C08 |
C07 |
180.0 |
89.9 |
H10 |
C28 |
C26 |
C29 |
65.5 |
299.9 |
C26 |
C28 |
H10 |
H11 |
120.0 |
120.1 |
C26 |
C28 |
H10 |
H12 |
240.0 |
240.0 |
H11 |
C28 |
H10 |
H12 |
120.0 |
120.0 |
H11 |
C28 |
C26 |
C29 |
185.5 |
60.0 |
C26 |
C28 |
H11 |
H10 |
240.0 |
240.0 |
C26 |
C28 |
H11 |
H12 |
120.0 |
120.0 |
H10 |
C28 |
H11 |
H12 |
240.0 |
240.0 |
H12 |
C28 |
C26 |
C29 |
305.5 |
179.9 |
C26 |
C28 |
H12 |
H10 |
120.0 |
120.0 |
C26 |
C28 |
H12 |
H11 |
240.0 |
240.0 |
H10 |
C28 |
H12 |
H11 |
120.0 |
120.0 |
C26 |
C29 |
H13 |
H14 |
120.0 |
120.0 |
C26 |
C29 |
H13 |
H15 |
240.0 |
239.9 |
H14 |
C29 |
H13 |
H15 |
120.0 |
120.0 |
C26 |
C29 |
H14 |
H13 |
240.0 |
240.1 |
C26 |
C29 |
H14 |
H15 |
120.0 |
120.1 |
H13 |
C29 |
H14 |
H15 |
240.0 |
240.1 |
C26 |
C29 |
H15 |
H13 |
120.0 |
120.0 |
C26 |
C29 |
H15 |
H14 |
240.0 |
240.0 |
H13 |
C29 |
H15 |
H14 |
120.0 |
119.9 |
H17 |
C27 |
H16 |
H18 |
120.0 |
119.9 |
H16 |
C27 |
H17 |
H18 |
240.0 |
240.0 |
H16 |
C27 |
H18 |
H17 |
120.0 |
119.9 |
C07 |
C06 |
H19 |
C05 |
180.0 |
179.8 |
H19 |
C06 |
C05 |
C02 |
359.9 |
0.0 |
H20 |
C03 |
C02 |
C01 |
301.0 |
180.0 |
C02 |
C03 |
H20 |
H21 |
120.0 |
120.0 |
C02 |
C03 |
H20 |
H22 |
240.0 |
240.1 |
H21 |
C03 |
H20 |
H22 |
120.0 |
120.0 |
H21 |
C03 |
C02 |
C01 |
61.0 |
300.0 |
C02 |
C03 |
H21 |
H20 |
240.0 |
240.0 |
C02 |
C03 |
H21 |
H22 |
120.0 |
120.0 |
H20 |
C03 |
H21 |
H22 |
240.0 |
240.0 |
H22 |
C03 |
C02 |
C01 |
181.0 |
60.0 |
C02 |
C03 |
H22 |
H20 |
120.0 |
120.0 |
C02 |
C03 |
H22 |
H21 |
240.0 |
240.0 |
H20 |
C03 |
H22 |
H21 |
120.0 |
120.0 |
H23 |
C04 |
C02 |
C01 |
58.0 |
304.8 |
H24 |
C04 |
H23 |
H25 |
120.0 |
120.0 |
H24 |
C04 |
C02 |
C01 |
178.0 |
64.8 |
H23 |
C04 |
H24 |
H25 |
240.0 |
239.9 |
H25 |
C04 |
C02 |
C01 |
298.0 |
184.8 |
H23 |
C04 |
H25 |
H24 |
120.0 |
120.1 |
C02 |
C01 |
H26 |
H27 |
120.0 |
120.0 |
C02 |
C01 |
H26 |
H28 |
240.0 |
240.1 |
H27 |
C01 |
H26 |
H28 |
120.0 |
120.0 |
C02 |
C01 |
H27 |
H26 |
240.0 |
240.0 |
C02 |
C01 |
H27 |
H28 |
120.0 |
120.0 |
H26 |
C01 |
H27 |
H28 |
240.0 |
240.0 |
C02 |
C01 |
H28 |
H26 |
120.0 |
120.0 |
C02 |
C01 |
H28 |
H27 |
240.0 |
240.0 |
H26 |
C01 |
H28 |
H27 |
119.9 |
120.0 |