PDB Chemical Component VX3
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for VX3
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O2 |
C3 |
1.341 |
1.216 |
| C17 |
C16 |
1.491 |
1.480 |
| C9 |
C16 |
1.382 |
1.379 |
| C16 |
C23 |
1.474 |
1.471 |
| C20 |
C19 |
1.395 |
1.384 |
| C19 |
C18 |
1.391 |
1.380 |
| C19 |
H19 |
1.080 |
1.080 |
| C5 |
C3 |
1.473 |
1.474 |
| C3 |
O4 |
1.228 |
1.347 |
| O4 |
HO4 |
0.950 |
0.967 |
| C6 |
C5 |
1.417 |
1.406 |
| C5 |
C26 |
1.404 |
1.394 |
| N7 |
C6 |
1.374 |
1.372 |
| C23 |
C6 |
1.404 |
1.406 |
| C9 |
N7 |
1.373 |
1.374 |
| C10 |
C9 |
1.486 |
1.476 |
| C11 |
C10 |
1.412 |
1.397 |
| C15 |
C10 |
1.407 |
1.397 |
| C12 |
C11 |
1.387 |
1.379 |
| C11 |
H11 |
1.080 |
1.080 |
| C13 |
C12 |
1.392 |
1.383 |
| C12 |
H12 |
1.080 |
1.080 |
| C13 |
C14 |
1.393 |
1.384 |
| C13 |
H13 |
1.080 |
1.080 |
| C14 |
C15 |
1.379 |
1.379 |
| C14 |
H14 |
1.080 |
1.080 |
| C15 |
H15 |
1.080 |
1.080 |
| C22 |
C17 |
1.417 |
1.395 |
| C17 |
C18 |
1.402 |
1.396 |
| C18 |
H18 |
1.080 |
1.080 |
| C21 |
C20 |
1.389 |
1.384 |
| C20 |
H20 |
1.081 |
1.079 |
| C21 |
C22 |
1.383 |
1.380 |
| C21 |
H21 |
1.080 |
1.080 |
| C22 |
H22 |
1.081 |
1.080 |
| C23 |
C24 |
1.399 |
1.395 |
| C24 |
C25 |
1.377 |
1.380 |
| C24 |
H24 |
1.080 |
1.079 |
| C25 |
C26 |
1.394 |
1.383 |
| C25 |
H25 |
1.080 |
1.081 |
| C26 |
H26 |
1.080 |
1.080 |
| N7 |
HN7 |
1.000 |
0.970 |
Bond Angles for VX3
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O2 |
C3 |
O4 |
120.1 |
120.0 |
| C17 |
C16 |
C23 |
124.6 |
126.8 |
| C9 |
C16 |
C23 |
106.1 |
106.4 |
| C16 |
C23 |
C6 |
106.7 |
106.3 |
| C16 |
C23 |
C24 |
133.5 |
133.6 |
| C20 |
C19 |
H19 |
119.5 |
119.9 |
| C18 |
C19 |
H19 |
119.5 |
119.9 |
| C19 |
C18 |
C17 |
119.4 |
119.8 |
| C19 |
C18 |
H18 |
120.3 |
120.1 |
| C3 |
O4 |
HO4 |
109.5 |
117.0 |
| C6 |
C5 |
C26 |
119.5 |
119.6 |
| C5 |
C26 |
C25 |
120.5 |
120.5 |
| C5 |
C26 |
H26 |
119.8 |
119.8 |
| C9 |
N7 |
HN7 |
124.6 |
124.9 |
| C12 |
C11 |
H11 |
120.2 |
120.1 |
| C13 |
C12 |
H12 |
120.0 |
119.9 |
| C14 |
C13 |
H13 |
119.8 |
119.8 |
| C13 |
C14 |
C15 |
120.3 |
120.2 |
| C13 |
C14 |
H14 |
119.8 |
119.9 |
| C15 |
C14 |
H14 |
119.8 |
119.9 |
| C14 |
C15 |
H15 |
120.1 |
120.1 |
| C17 |
C18 |
H18 |
120.3 |
120.1 |
| C21 |
C20 |
H20 |
119.8 |
119.8 |
| C22 |
C21 |
H21 |
120.5 |
119.9 |
| C21 |
C22 |
H22 |
119.3 |
120.1 |
| C23 |
C24 |
C25 |
121.1 |
120.0 |
| C23 |
C24 |
H24 |
119.4 |
120.0 |
| C25 |
C24 |
H24 |
119.5 |
120.0 |
| C24 |
C25 |
C26 |
119.9 |
120.6 |
| C24 |
C25 |
H25 |
120.1 |
119.7 |
| C26 |
C25 |
H25 |
120.0 |
119.7 |
| C25 |
C26 |
H26 |
119.8 |
119.7 |
Torsion Angles for VX3
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O2 |
C3 |
O4 |
HO4 |
360.0 |
0.0 |
| C9 |
C16 |
C17 |
C23 |
186.6 |
179.7 |
| C17 |
C16 |
C23 |
C6 |
184.3 |
179.7 |
| C17 |
C16 |
C23 |
C24 |
4.9 |
359.7 |
| C17 |
C16 |
C9 |
C23 |
174.3 |
180.3 |
| C9 |
C16 |
C23 |
C6 |
359.0 |
360.0 |
| C9 |
C16 |
C23 |
C24 |
179.6 |
180.0 |
| C16 |
C23 |
C24 |
C25 |
179.3 |
180.0 |
| C16 |
C23 |
C24 |
H24 |
359.3 |
360.0 |
| C18 |
C19 |
C20 |
H19 |
180.0 |
179.7 |
| C20 |
C19 |
C18 |
H18 |
179.0 |
180.2 |
| C20 |
C19 |
C18 |
H19 |
180.0 |
180.3 |
| C17 |
C18 |
C19 |
H18 |
180.0 |
180.0 |
| H19 |
C19 |
C18 |
C17 |
179.0 |
180.0 |
| H19 |
C19 |
C18 |
H18 |
359.0 |
360.0 |
| C5 |
C3 |
O4 |
HO4 |
183.3 |
180.0 |
| C16 |
C23 |
C6 |
C5 |
180.3 |
180.0 |
| C6 |
C5 |
C26 |
C25 |
1.7 |
0.0 |
| C6 |
C5 |
C26 |
H26 |
181.7 |
180.0 |
| C24 |
C25 |
C26 |
C5 |
358.0 |
360.0 |
| C5 |
C26 |
C25 |
H25 |
178.0 |
180.0 |
| C25 |
C26 |
C5 |
H26 |
180.0 |
180.0 |
| C16 |
C23 |
C6 |
N7 |
0.4 |
0.0 |
| N7 |
C6 |
C5 |
C26 |
179.2 |
179.9 |
| C16 |
C23 |
C6 |
C24 |
180.5 |
180.0 |
| C23 |
C6 |
C5 |
C26 |
359.4 |
360.0 |
| N7 |
C9 |
C16 |
C23 |
1.3 |
360.0 |
| C10 |
C9 |
C16 |
C23 |
179.3 |
180.0 |
| C10 |
C9 |
N7 |
HN7 |
0.8 |
359.9 |
| C13 |
C12 |
C11 |
H11 |
180.4 |
180.0 |
| H12 |
C12 |
C11 |
H11 |
0.4 |
0.0 |
| C14 |
C13 |
C12 |
H12 |
180.7 |
180.0 |
| C15 |
C14 |
C13 |
H14 |
180.0 |
179.7 |
| C13 |
C14 |
C15 |
H15 |
179.6 |
180.0 |
| H13 |
C13 |
C12 |
H12 |
0.7 |
360.0 |
| H13 |
C13 |
C14 |
C15 |
179.2 |
179.7 |
| H13 |
C13 |
C14 |
H14 |
359.2 |
0.0 |
| C15 |
C14 |
C13 |
H13 |
179.2 |
179.7 |
| C13 |
C14 |
C15 |
H14 |
180.0 |
180.3 |
| H14 |
C14 |
C13 |
H13 |
359.2 |
0.0 |
| C13 |
C14 |
H14 |
C15 |
180.0 |
179.7 |
| H14 |
C14 |
C15 |
H15 |
359.6 |
359.6 |
| H15 |
C15 |
C14 |
H14 |
359.6 |
359.6 |
| C22 |
C17 |
C16 |
C23 |
128.3 |
246.9 |
| C22 |
C17 |
C18 |
H18 |
182.5 |
179.5 |
| C18 |
C17 |
C16 |
C23 |
313.6 |
66.3 |
| C17 |
C18 |
C19 |
H19 |
179.0 |
180.0 |
| C19 |
C18 |
C17 |
H18 |
180.0 |
180.0 |
| H18 |
C18 |
C19 |
H19 |
359.0 |
360.0 |
| C19 |
C18 |
H18 |
C17 |
180.0 |
180.0 |
| C21 |
C20 |
C19 |
H19 |
179.7 |
180.3 |
| H20 |
C20 |
C19 |
H19 |
359.7 |
0.3 |
| C22 |
C21 |
C20 |
H20 |
180.1 |
180.0 |
| H21 |
C21 |
C20 |
H20 |
0.2 |
0.1 |
| H21 |
C21 |
C22 |
H22 |
1.4 |
360.0 |
| H22 |
C22 |
C21 |
H21 |
1.4 |
360.0 |
| C16 |
C23 |
C24 |
C6 |
179.3 |
180.0 |
| C25 |
C24 |
C23 |
H24 |
180.0 |
180.0 |
| C23 |
C24 |
C25 |
C26 |
1.1 |
360.0 |
| C23 |
C24 |
C25 |
H25 |
181.1 |
180.0 |
| C5 |
C26 |
C25 |
C24 |
358.0 |
360.0 |
| C23 |
C24 |
C25 |
H24 |
180.0 |
180.0 |
| C26 |
C25 |
C24 |
H25 |
180.0 |
180.0 |
| C24 |
C25 |
C26 |
H26 |
178.0 |
180.0 |
| C23 |
C24 |
H24 |
C25 |
180.0 |
180.0 |
| H24 |
C24 |
C25 |
C26 |
181.1 |
180.0 |
| H24 |
C24 |
C25 |
H25 |
1.1 |
360.0 |
| C5 |
C26 |
C25 |
H26 |
180.0 |
180.0 |
| C26 |
C25 |
C24 |
H24 |
181.1 |
180.0 |
| C24 |
C25 |
C26 |
H25 |
180.0 |
180.0 |
| H25 |
C25 |
C24 |
H24 |
1.1 |
360.0 |
| C24 |
C25 |
H25 |
C26 |
180.0 |
180.0 |
| H25 |
C25 |
C26 |
H26 |
358.0 |
0.0 |
| C5 |
C26 |
H26 |
C25 |
180.0 |
180.0 |
| H26 |
C26 |
C25 |
H25 |
358.0 |
0.0 |