PDB Chemical Component VX2
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for VX2
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| F2 |
C1 |
1.360 |
1.399 |
| F3 |
C1 |
1.360 |
1.398 |
| C1 |
F1 |
1.358 |
1.399 |
| C1 |
C2 |
1.545 |
1.507 |
| C9 |
N2 |
1.333 |
1.325 |
| N2 |
N1 |
1.322 |
1.287 |
| C2 |
C3 |
1.488 |
1.383 |
| C3 |
C4 |
1.458 |
1.385 |
| C3 |
H3 |
1.080 |
1.080 |
| C5 |
C4 |
1.459 |
1.379 |
| C4 |
H4 |
1.080 |
1.079 |
| C6 |
C5 |
1.474 |
1.396 |
| C5 |
H5 |
1.081 |
1.080 |
| C10 |
C9 |
1.425 |
1.407 |
| N5 |
C9 |
1.417 |
1.372 |
| C11 |
C10 |
1.449 |
1.360 |
| C10 |
H10 |
1.080 |
1.079 |
| N3 |
C12 |
1.383 |
1.391 |
| C12 |
C11 |
1.450 |
1.409 |
| C12 |
N4 |
1.390 |
1.313 |
| C18 |
C13 |
1.544 |
1.529 |
| C13 |
C14 |
1.525 |
1.530 |
| C13 |
N3 |
1.444 |
1.465 |
| C13 |
H13 |
1.100 |
1.090 |
| C7 |
C2 |
1.465 |
1.380 |
| C7 |
C6 |
1.459 |
1.395 |
| C7 |
H7 |
1.080 |
1.080 |
| C11 |
H11 |
1.080 |
1.080 |
| C16 |
C15 |
1.523 |
1.531 |
| C15 |
C14 |
1.522 |
1.530 |
| C15 |
H15 |
1.100 |
1.089 |
| C15 |
H15A |
1.101 |
1.091 |
| C8 |
N1 |
1.359 |
1.321 |
| C8 |
C6 |
1.498 |
1.478 |
| N5 |
C8 |
1.410 |
1.363 |
| N3 |
HN3 |
1.000 |
0.969 |
| C14 |
H14 |
1.100 |
1.089 |
| C14 |
H14A |
1.100 |
1.090 |
| C17 |
C16 |
1.523 |
1.530 |
| C16 |
H16 |
1.099 |
1.089 |
| C16 |
H16A |
1.100 |
1.090 |
| C17 |
C18 |
1.522 |
1.530 |
| C17 |
H17 |
1.100 |
1.090 |
| C17 |
H17A |
1.100 |
1.090 |
| C18 |
H18 |
1.100 |
1.090 |
| C18 |
H18A |
1.100 |
1.090 |
| N4 |
N5 |
1.418 |
1.397 |
Bond Angles for VX2
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
F1 |
107.8 |
109.4 |
| C1 |
C2 |
C3 |
122.3 |
119.9 |
| C9 |
N2 |
N1 |
116.0 |
109.6 |
| C2 |
C3 |
H3 |
119.5 |
119.9 |
| C4 |
C3 |
H3 |
119.5 |
119.8 |
| C3 |
C4 |
H4 |
120.0 |
120.0 |
| C5 |
C4 |
H4 |
119.9 |
120.0 |
| C6 |
C5 |
H5 |
119.6 |
120.1 |
| C11 |
C10 |
H10 |
120.8 |
120.4 |
| N3 |
C12 |
N4 |
123.7 |
119.6 |
| C11 |
C12 |
N4 |
114.7 |
120.8 |
| C12 |
C11 |
H11 |
118.5 |
119.9 |
| C12 |
N4 |
N5 |
124.8 |
120.5 |
| C18 |
C13 |
H13 |
105.7 |
109.5 |
| N3 |
C13 |
C14 |
108.0 |
109.4 |
| C14 |
C13 |
H13 |
108.2 |
109.4 |
| C13 |
C14 |
C15 |
112.2 |
109.5 |
| C13 |
C14 |
H14 |
108.6 |
109.5 |
| C13 |
C14 |
H14A |
108.0 |
109.4 |
| N3 |
C13 |
H13 |
111.1 |
109.5 |
| C13 |
N3 |
HN3 |
105.8 |
120.0 |
| C6 |
C7 |
H7 |
118.2 |
120.1 |
| C16 |
C15 |
H15 |
108.7 |
109.5 |
| C16 |
C15 |
H15A |
108.1 |
109.5 |
| C14 |
C15 |
H15 |
108.7 |
109.5 |
| C14 |
C15 |
H15A |
108.1 |
109.4 |
| C15 |
C14 |
H14 |
108.6 |
109.5 |
| C15 |
C14 |
H14A |
108.0 |
109.5 |
| H15 |
C15 |
H15A |
111.4 |
109.5 |
| H14 |
C14 |
H14A |
111.6 |
109.5 |
| C17 |
C16 |
H16 |
108.6 |
109.5 |
| C17 |
C16 |
H16A |
108.0 |
109.5 |
| H16 |
C16 |
H16A |
111.6 |
109.5 |
| C18 |
C17 |
H17 |
108.7 |
109.5 |
| C18 |
C17 |
H17A |
108.2 |
109.5 |
| C17 |
C18 |
H18 |
108.7 |
109.5 |
| C17 |
C18 |
H18A |
108.2 |
109.5 |
| H17 |
C17 |
H17A |
111.4 |
109.5 |
| H18 |
C18 |
H18A |
111.3 |
109.5 |
Torsion Angles for VX2
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| F1 |
C1 |
C2 |
C3 |
302.4 |
0.0 |
| C1 |
C2 |
C3 |
H3 |
359.8 |
0.3 |
| C3 |
C2 |
C1 |
F1 |
302.4 |
0.0 |
| C4 |
C3 |
C2 |
H3 |
180.0 |
179.6 |
| C2 |
C3 |
C4 |
H4 |
180.3 |
180.2 |
| C1 |
C2 |
C3 |
C4 |
179.8 |
179.9 |
| C2 |
C3 |
C4 |
H3 |
180.0 |
180.4 |
| C5 |
C4 |
C3 |
H4 |
180.0 |
180.1 |
| H3 |
C3 |
C4 |
H4 |
0.3 |
359.8 |
| C5 |
C4 |
C3 |
H3 |
180.3 |
180.0 |
| C3 |
C4 |
C5 |
H4 |
180.0 |
179.9 |
| H4 |
C4 |
C3 |
H3 |
0.3 |
359.8 |
| C6 |
C5 |
C4 |
H4 |
179.9 |
180.0 |
| H5 |
C5 |
C4 |
H4 |
359.9 |
0.0 |
| C10 |
C9 |
N2 |
N1 |
178.3 |
180.0 |
| C11 |
C12 |
N3 |
N4 |
178.5 |
179.9 |
| N3 |
C12 |
C11 |
H11 |
1.7 |
0.1 |
| N3 |
C12 |
N4 |
N5 |
178.6 |
180.0 |
| C12 |
C11 |
C10 |
H10 |
180.0 |
180.0 |
| N3 |
C12 |
C11 |
N4 |
181.3 |
180.1 |
| C11 |
C12 |
N4 |
N5 |
0.0 |
0.1 |
| N4 |
C12 |
C11 |
H11 |
180.3 |
180.0 |
| C14 |
C13 |
C18 |
H13 |
241.7 |
240.0 |
| C18 |
C13 |
C14 |
H14 |
170.5 |
180.0 |
| C18 |
C13 |
C14 |
H14A |
291.6 |
300.0 |
| N3 |
C13 |
C18 |
H13 |
120.3 |
120.0 |
| C18 |
C13 |
N3 |
HN3 |
91.3 |
95.0 |
| C18 |
C13 |
C14 |
H13 |
116.8 |
120.0 |
| N3 |
C13 |
C14 |
H13 |
239.6 |
240.0 |
| C14 |
C13 |
N3 |
HN3 |
326.9 |
335.0 |
| C13 |
C14 |
C15 |
H15 |
187.8 |
60.0 |
| C13 |
C14 |
C15 |
H15A |
66.7 |
180.0 |
| C15 |
C14 |
C13 |
H14 |
240.0 |
240.0 |
| C15 |
C14 |
C13 |
H14A |
118.9 |
120.0 |
| H14 |
C14 |
C13 |
H14A |
238.9 |
240.0 |
| C13 |
N3 |
C12 |
N4 |
350.5 |
0.1 |
| C18 |
C13 |
N3 |
H13 |
243.0 |
240.0 |
| C14 |
C13 |
N3 |
H13 |
118.6 |
120.0 |
| N3 |
C13 |
C14 |
C15 |
173.2 |
180.0 |
| N3 |
C13 |
C14 |
H14 |
293.2 |
300.0 |
| N3 |
C13 |
C14 |
H14A |
54.4 |
60.0 |
| N3 |
C13 |
H13 |
C14 |
118.5 |
120.0 |
| H13 |
C13 |
C14 |
C15 |
293.6 |
300.0 |
| H13 |
C13 |
C14 |
H14 |
53.6 |
60.0 |
| H13 |
C13 |
C14 |
H14A |
174.8 |
180.0 |
| H13 |
C13 |
N3 |
HN3 |
208.3 |
215.0 |
| C7 |
C2 |
C1 |
F1 |
122.4 |
180.0 |
| C7 |
C2 |
C3 |
H3 |
179.8 |
180.4 |
| C7 |
C6 |
C5 |
H5 |
179.7 |
179.5 |
| H11 |
C11 |
C10 |
H10 |
359.9 |
359.9 |
| H11 |
C11 |
C12 |
N4 |
180.3 |
180.0 |
| C14 |
C15 |
C16 |
H15 |
240.0 |
120.0 |
| C14 |
C15 |
C16 |
H15A |
119.0 |
240.0 |
| C16 |
C15 |
C14 |
H14 |
187.7 |
180.0 |
| C16 |
C15 |
C14 |
H14A |
66.6 |
60.0 |
| H15 |
C15 |
C16 |
H15A |
239.0 |
120.0 |
| C15 |
C14 |
C13 |
H13 |
293.6 |
300.0 |
| C13 |
C14 |
C15 |
H14 |
120.0 |
120.1 |
| C13 |
C14 |
C15 |
H14A |
241.1 |
240.1 |
| C16 |
C15 |
C14 |
H15 |
120.0 |
240.0 |
| C16 |
C15 |
C14 |
H15A |
241.0 |
120.0 |
| H15 |
C15 |
C14 |
H15A |
121.0 |
240.0 |
| H14 |
C14 |
C15 |
H14A |
121.1 |
120.0 |
| C16 |
C15 |
H15 |
H15A |
119.0 |
240.0 |
| C14 |
C15 |
H15 |
H15A |
241.0 |
120.0 |
| H15 |
C15 |
C14 |
H14 |
67.7 |
300.0 |
| H15 |
C15 |
C14 |
H14A |
306.6 |
180.0 |
| C16 |
C15 |
H15A |
H15 |
240.7 |
120.0 |
| C14 |
C15 |
H15A |
H15 |
119.3 |
240.0 |
| H15A |
C15 |
C14 |
H14 |
306.7 |
60.0 |
| H15A |
C15 |
C14 |
H14A |
185.6 |
300.0 |
| C8 |
C6 |
C5 |
H5 |
357.0 |
0.3 |
| C8 |
C6 |
C7 |
H7 |
3.0 |
359.5 |
| C12 |
N4 |
N5 |
C8 |
178.3 |
180.0 |
| HN3 |
N3 |
C12 |
N4 |
110.5 |
180.0 |
| HN3 |
N3 |
C13 |
C14 |
326.9 |
335.0 |
| HN3 |
N3 |
C13 |
H13 |
208.3 |
215.0 |
| H14 |
C14 |
C13 |
H13 |
53.6 |
60.0 |
| C13 |
C14 |
H14 |
C15 |
237.8 |
240.0 |
| C13 |
C14 |
H14 |
H14A |
118.9 |
120.0 |
| H14 |
C14 |
C15 |
H15 |
67.7 |
300.0 |
| H14 |
C14 |
C15 |
H15A |
306.7 |
60.0 |
| C15 |
C14 |
H14 |
H14A |
241.1 |
240.0 |
| H14A |
C14 |
C13 |
H13 |
174.8 |
180.0 |
| C13 |
C14 |
H14A |
C15 |
121.5 |
120.0 |
| C13 |
C14 |
H14A |
H14 |
240.7 |
239.9 |
| H14A |
C14 |
C15 |
H15 |
306.6 |
180.0 |
| H14A |
C14 |
C15 |
H15A |
185.6 |
300.0 |
| C15 |
C14 |
H14A |
H14 |
119.2 |
120.0 |
| C17 |
C16 |
C15 |
H15 |
174.8 |
300.0 |
| C17 |
C16 |
C15 |
H15A |
295.8 |
179.9 |
| H16 |
C16 |
C17 |
H16A |
121.2 |
120.1 |
| H16 |
C16 |
C15 |
H15 |
294.8 |
60.0 |
| H16 |
C16 |
C15 |
H15A |
55.8 |
300.0 |
| C17 |
C16 |
H16 |
H16A |
241.1 |
240.0 |
| H16A |
C16 |
C15 |
H15 |
56.0 |
180.0 |
| H16A |
C16 |
C15 |
H15A |
177.0 |
60.0 |
| C17 |
C16 |
H16A |
H16 |
119.3 |
120.1 |
| C17 |
C18 |
C13 |
H13 |
67.8 |
60.0 |
| C18 |
C17 |
C16 |
H16 |
185.0 |
180.0 |
| C18 |
C17 |
C16 |
H16A |
63.8 |
59.9 |
| H17 |
C17 |
C18 |
H17A |
121.0 |
120.0 |
| H18 |
C18 |
C17 |
H18A |
121.0 |
120.0 |
| H17 |
C17 |
C16 |
H16 |
305.0 |
300.0 |
| H17 |
C17 |
C16 |
H16A |
183.8 |
179.9 |
| C18 |
C17 |
H17 |
H17A |
241.0 |
240.0 |
| H17 |
C17 |
C18 |
H18 |
172.3 |
180.0 |
| H17 |
C17 |
C18 |
H18A |
51.3 |
60.0 |
| H17A |
C17 |
C16 |
H16 |
66.0 |
60.0 |
| H17A |
C17 |
C16 |
H16A |
304.8 |
299.9 |
| C18 |
C17 |
H17A |
H17 |
119.3 |
120.0 |
| H17A |
C17 |
C18 |
H18 |
51.2 |
60.0 |
| H17A |
C17 |
C18 |
H18A |
290.3 |
300.0 |
| H18 |
C18 |
C13 |
H13 |
187.8 |
180.0 |
| H18 |
C18 |
C17 |
H17 |
172.3 |
180.0 |
| H18 |
C18 |
C17 |
H17A |
51.2 |
60.0 |
| C17 |
C18 |
H18 |
H18A |
240.9 |
240.0 |
| H18A |
C18 |
C13 |
H13 |
308.7 |
300.0 |
| H18A |
C18 |
C17 |
H17 |
51.3 |
60.0 |
| H18A |
C18 |
C17 |
H17A |
290.3 |
300.0 |
| C17 |
C18 |
H18A |
H18 |
119.4 |
120.0 |