PDB Chemical Component VX

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for VX

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P1 O1 1.468 1.502
P1 O2 1.428 1.618
P1 C1 1.796 1.781
O2 C2 1.456 1.416
C1 H1 1.115 1.092
C1 H2 1.115 1.093
C1 H3 1.116 1.093
C2 C3 1.416 1.513
C2 H21 1.114 1.094
C2 H22 1.116 1.094
C3 H31 1.115 1.093
C3 H32 1.115 1.095
C3 H33 1.114 1.095
P1 O3   1.617
O3 H3O   0.981

Bond Angles for VX

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1 P1 O2 111.4 114.5
O1 P1 C1 114.6 113.7
O1 P1 O3   114.4
O2 P1 C1 110.9 105.9
P1 O2 C2 126.2 121.0
O2 P1 O3   103.0
P1 C1 H1 114.6 110.1
P1 C1 H2 110.4 110.1
P1 C1 H3 110.3 110.1
C1 P1 O3   104.1
O2 C2 C3 114.4 109.0
O2 C2 H21 110.4 108.8
O2 C2 H22 110.4 108.8
H1 C1 H2 110.4 108.9
H1 C1 H3 110.4 108.8
H2 C1 H3 99.8 108.8
C3 C2 H21 110.4 110.6
C3 C2 H22 110.4 110.6
C2 C3 H31 114.4 110.9
C2 C3 H32 110.4 110.7
C2 C3 H33 110.4 110.7
H21 C2 H22 99.9 109.1
H31 C3 H32 110.3 108.8
H31 C3 H33 110.5 108.8
H32 C3 H33 99.9 106.9
P1 O3 H3O   118.9

Torsion Angles for VX

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2 P1 O1 C1 233.1 238.1
O1 P1 O2 C2 40.5 186.1
O2 P1 O1 O3   118.7
O1 P1 C1 H1 180.0 28.0
O1 P1 C1 H2 305.3 148.1
O1 P1 C1 H3 54.7 268.0
C1 P1 O1 O3   240.6
O1 P1 O3 H3O   6.1
O1 P1 O2 C1 128.9 126.1
O1 P1 O2 O3   235.1
O2 P1 C1 H1 307.1 154.6
O2 P1 C1 H2 72.5 274.7
O2 P1 C1 H3 181.9 34.6
C1 P1 O2 O3   109.0
P1 O2 C2 C3 85.7 180.0
P1 O2 C2 H21 211.0 300.6
P1 O2 C2 H22 320.4 59.4
O2 P1 O3 H3O   241.1
O1 P1 C1 O2 232.9 233.4
O1 P1 C1 O3   125.2
C1 P1 O2 C2 271.6 60.0
O2 P1 C1 O3   251.8
H1 C1 P1 H2 234.7 239.9
H1 C1 P1 H3 125.3 120.0
H2 C1 P1 H3 250.6 240.0
C1 P1 O3 H3O   130.8
C2 O2 P1 C1 271.6 60.0
C2 O2 P1 O3   311.0
C3 C2 O2 H21 234.7 239.4
C3 C2 O2 H22 125.2 120.6
O2 C2 C3 H31 180.1 180.0
O2 C2 C3 H32 305.2 300.8
O2 C2 C3 H33 54.7 59.1
H21 C2 O2 H22 250.5 241.2
P1 C1 H1 H2 125.3 120.8
P1 C1 H1 H3 234.7 239.3
H1 C1 P1 O3   262.9
H2 C1 H1 H3 109.4 118.5
P1 C1 H2 H1 232.3 239.2
P1 C1 H2 H3 116.1 120.7
H2 C1 P1 O3   22.9
H1 C1 H2 H3 243.8 241.5
P1 C1 H3 H1 127.6 120.8
P1 C1 H3 H2 243.8 239.3
H3 C1 P1 O3   142.9
H1 C1 H3 H2 116.2 118.5
O2 C2 C3 H21 125.3 119.5
O2 C2 C3 H22 234.8 240.5
H21 C2 C3 H22 109.5 121.0
H31 C3 C2 H32 234.8 239.1
H31 C3 C2 H33 125.4 120.9
H32 C3 C2 H33 250.5 241.7
O2 C2 H21 C3 232.5 240.4
O2 C2 H21 H22 116.3 118.6
C3 C2 H21 H22 243.8 238.2
H21 C2 C3 H31 54.8 60.5
H21 C2 C3 H32 179.9 181.3
H21 C2 C3 H33 289.4 299.6
O2 C2 H22 C3 127.5 119.6
O2 C2 H22 H21 243.7 241.4
C3 C2 H22 H21 116.2 121.8
H22 C2 C3 H31 305.3 299.5
H22 C2 C3 H32 70.5 60.4
H22 C2 C3 H33 179.9 178.6
H31 C3 C2 H21 54.8 60.5
H31 C3 C2 H22 305.3 299.5
C2 C3 H31 H32 125.2 121.9
C2 C3 H31 H33 234.7 238.0
H32 C3 H31 H33 109.5 116.1
H32 C3 C2 H21 179.9 181.3
H32 C3 C2 H22 70.5 60.4
C2 C3 H32 H31 232.5 237.9
C2 C3 H32 H33 116.2 120.6
H31 C3 H32 H33 243.7 242.7
H33 C3 C2 H21 289.4 299.6
H33 C3 C2 H22 179.9 178.6
C2 C3 H33 H31 127.6 122.1
C2 C3 H33 H32 243.8 239.4
H31 C3 H33 H32 116.2 117.3
O1 P1 O3 O2   125.0
O1 P1 O3 C1   235.3
O2 P1 O3 C1   110.3
O3 P1 O2 C2   311.0
O3 P1 C1 H1   262.9
O3 P1 C1 H2   22.9
O3 P1 C1 H3   142.9