PDB Chemical Component VX
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for VX
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
P1 |
O1 |
1.468 |
1.502 |
P1 |
O2 |
1.428 |
1.618 |
P1 |
C1 |
1.796 |
1.781 |
O2 |
C2 |
1.456 |
1.416 |
C1 |
H1 |
1.115 |
1.092 |
C1 |
H2 |
1.115 |
1.093 |
C1 |
H3 |
1.116 |
1.093 |
C2 |
C3 |
1.416 |
1.513 |
C2 |
H21 |
1.114 |
1.094 |
C2 |
H22 |
1.116 |
1.094 |
C3 |
H31 |
1.115 |
1.093 |
C3 |
H32 |
1.115 |
1.095 |
C3 |
H33 |
1.114 |
1.095 |
P1 |
O3 |
|
1.617 |
O3 |
H3O |
|
0.981 |
Bond Angles for VX
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O1 |
P1 |
O2 |
111.4 |
114.5 |
O1 |
P1 |
C1 |
114.6 |
113.7 |
O1 |
P1 |
O3 |
|
114.4 |
O2 |
P1 |
C1 |
110.9 |
105.9 |
P1 |
O2 |
C2 |
126.2 |
121.0 |
O2 |
P1 |
O3 |
|
103.0 |
P1 |
C1 |
H1 |
114.6 |
110.1 |
P1 |
C1 |
H2 |
110.4 |
110.1 |
P1 |
C1 |
H3 |
110.3 |
110.1 |
C1 |
P1 |
O3 |
|
104.1 |
O2 |
C2 |
C3 |
114.4 |
109.0 |
O2 |
C2 |
H21 |
110.4 |
108.8 |
O2 |
C2 |
H22 |
110.4 |
108.8 |
H1 |
C1 |
H2 |
110.4 |
108.9 |
H1 |
C1 |
H3 |
110.4 |
108.8 |
H2 |
C1 |
H3 |
99.8 |
108.8 |
C3 |
C2 |
H21 |
110.4 |
110.6 |
C3 |
C2 |
H22 |
110.4 |
110.6 |
C2 |
C3 |
H31 |
114.4 |
110.9 |
C2 |
C3 |
H32 |
110.4 |
110.7 |
C2 |
C3 |
H33 |
110.4 |
110.7 |
H21 |
C2 |
H22 |
99.9 |
109.1 |
H31 |
C3 |
H32 |
110.3 |
108.8 |
H31 |
C3 |
H33 |
110.5 |
108.8 |
H32 |
C3 |
H33 |
99.9 |
106.9 |
P1 |
O3 |
H3O |
|
118.9 |
Torsion Angles for VX
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O2 |
P1 |
O1 |
C1 |
233.1 |
238.1 |
O1 |
P1 |
O2 |
C2 |
40.5 |
186.1 |
O2 |
P1 |
O1 |
O3 |
|
118.7 |
O1 |
P1 |
C1 |
H1 |
180.0 |
28.0 |
O1 |
P1 |
C1 |
H2 |
305.3 |
148.1 |
O1 |
P1 |
C1 |
H3 |
54.7 |
268.0 |
C1 |
P1 |
O1 |
O3 |
|
240.6 |
O1 |
P1 |
O3 |
H3O |
|
6.1 |
O1 |
P1 |
O2 |
C1 |
128.9 |
126.1 |
O1 |
P1 |
O2 |
O3 |
|
235.1 |
O2 |
P1 |
C1 |
H1 |
307.1 |
154.6 |
O2 |
P1 |
C1 |
H2 |
72.5 |
274.7 |
O2 |
P1 |
C1 |
H3 |
181.9 |
34.6 |
C1 |
P1 |
O2 |
O3 |
|
109.0 |
P1 |
O2 |
C2 |
C3 |
85.7 |
180.0 |
P1 |
O2 |
C2 |
H21 |
211.0 |
300.6 |
P1 |
O2 |
C2 |
H22 |
320.4 |
59.4 |
O2 |
P1 |
O3 |
H3O |
|
241.1 |
O1 |
P1 |
C1 |
O2 |
232.9 |
233.4 |
O1 |
P1 |
C1 |
O3 |
|
125.2 |
C1 |
P1 |
O2 |
C2 |
271.6 |
60.0 |
O2 |
P1 |
C1 |
O3 |
|
251.8 |
H1 |
C1 |
P1 |
H2 |
234.7 |
239.9 |
H1 |
C1 |
P1 |
H3 |
125.3 |
120.0 |
H2 |
C1 |
P1 |
H3 |
250.6 |
240.0 |
C1 |
P1 |
O3 |
H3O |
|
130.8 |
C2 |
O2 |
P1 |
C1 |
271.6 |
60.0 |
C2 |
O2 |
P1 |
O3 |
|
311.0 |
C3 |
C2 |
O2 |
H21 |
234.7 |
239.4 |
C3 |
C2 |
O2 |
H22 |
125.2 |
120.6 |
O2 |
C2 |
C3 |
H31 |
180.1 |
180.0 |
O2 |
C2 |
C3 |
H32 |
305.2 |
300.8 |
O2 |
C2 |
C3 |
H33 |
54.7 |
59.1 |
H21 |
C2 |
O2 |
H22 |
250.5 |
241.2 |
P1 |
C1 |
H1 |
H2 |
125.3 |
120.8 |
P1 |
C1 |
H1 |
H3 |
234.7 |
239.3 |
H1 |
C1 |
P1 |
O3 |
|
262.9 |
H2 |
C1 |
H1 |
H3 |
109.4 |
118.5 |
P1 |
C1 |
H2 |
H1 |
232.3 |
239.2 |
P1 |
C1 |
H2 |
H3 |
116.1 |
120.7 |
H2 |
C1 |
P1 |
O3 |
|
22.9 |
H1 |
C1 |
H2 |
H3 |
243.8 |
241.5 |
P1 |
C1 |
H3 |
H1 |
127.6 |
120.8 |
P1 |
C1 |
H3 |
H2 |
243.8 |
239.3 |
H3 |
C1 |
P1 |
O3 |
|
142.9 |
H1 |
C1 |
H3 |
H2 |
116.2 |
118.5 |
O2 |
C2 |
C3 |
H21 |
125.3 |
119.5 |
O2 |
C2 |
C3 |
H22 |
234.8 |
240.5 |
H21 |
C2 |
C3 |
H22 |
109.5 |
121.0 |
H31 |
C3 |
C2 |
H32 |
234.8 |
239.1 |
H31 |
C3 |
C2 |
H33 |
125.4 |
120.9 |
H32 |
C3 |
C2 |
H33 |
250.5 |
241.7 |
O2 |
C2 |
H21 |
C3 |
232.5 |
240.4 |
O2 |
C2 |
H21 |
H22 |
116.3 |
118.6 |
C3 |
C2 |
H21 |
H22 |
243.8 |
238.2 |
H21 |
C2 |
C3 |
H31 |
54.8 |
60.5 |
H21 |
C2 |
C3 |
H32 |
179.9 |
181.3 |
H21 |
C2 |
C3 |
H33 |
289.4 |
299.6 |
O2 |
C2 |
H22 |
C3 |
127.5 |
119.6 |
O2 |
C2 |
H22 |
H21 |
243.7 |
241.4 |
C3 |
C2 |
H22 |
H21 |
116.2 |
121.8 |
H22 |
C2 |
C3 |
H31 |
305.3 |
299.5 |
H22 |
C2 |
C3 |
H32 |
70.5 |
60.4 |
H22 |
C2 |
C3 |
H33 |
179.9 |
178.6 |
H31 |
C3 |
C2 |
H21 |
54.8 |
60.5 |
H31 |
C3 |
C2 |
H22 |
305.3 |
299.5 |
C2 |
C3 |
H31 |
H32 |
125.2 |
121.9 |
C2 |
C3 |
H31 |
H33 |
234.7 |
238.0 |
H32 |
C3 |
H31 |
H33 |
109.5 |
116.1 |
H32 |
C3 |
C2 |
H21 |
179.9 |
181.3 |
H32 |
C3 |
C2 |
H22 |
70.5 |
60.4 |
C2 |
C3 |
H32 |
H31 |
232.5 |
237.9 |
C2 |
C3 |
H32 |
H33 |
116.2 |
120.6 |
H31 |
C3 |
H32 |
H33 |
243.7 |
242.7 |
H33 |
C3 |
C2 |
H21 |
289.4 |
299.6 |
H33 |
C3 |
C2 |
H22 |
179.9 |
178.6 |
C2 |
C3 |
H33 |
H31 |
127.6 |
122.1 |
C2 |
C3 |
H33 |
H32 |
243.8 |
239.4 |
H31 |
C3 |
H33 |
H32 |
116.2 |
117.3 |
O1 |
P1 |
O3 |
O2 |
|
125.0 |
O1 |
P1 |
O3 |
C1 |
|
235.3 |
O2 |
P1 |
O3 |
C1 |
|
110.3 |
O3 |
P1 |
O2 |
C2 |
|
311.0 |
O3 |
P1 |
C1 |
H1 |
|
262.9 |
O3 |
P1 |
C1 |
H2 |
|
22.9 |
O3 |
P1 |
C1 |
H3 |
|
142.9 |