PDB Chemical Component VU2
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for VU2
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
N2 |
1.492 |
1.469 |
C1 |
C8 |
1.530 |
1.530 |
C2 |
C3 |
1.396 |
1.382 |
C2 |
C7 |
1.398 |
1.383 |
C3 |
C4 |
1.395 |
1.382 |
C7 |
C6 |
1.397 |
1.382 |
C9 |
C10 |
1.512 |
1.507 |
C9 |
O1 |
1.431 |
1.429 |
C10 |
C11 |
1.396 |
1.382 |
C10 |
C15 |
1.397 |
1.382 |
C11 |
C12 |
1.396 |
1.383 |
C12 |
C13 |
1.398 |
1.384 |
C13 |
C14 |
1.396 |
1.383 |
C13 |
CL |
1.794 |
1.736 |
C14 |
C15 |
1.396 |
1.382 |
C4 |
C5 |
1.398 |
1.383 |
C5 |
C6 |
1.396 |
1.382 |
C5 |
C8 |
1.483 |
1.507 |
O1 |
C8 |
1.432 |
1.429 |
C1 |
H11C |
1.101 |
1.090 |
C1 |
H12C |
1.100 |
1.090 |
N2 |
H21N |
1.000 |
1.009 |
N2 |
H22N |
1.000 |
1.008 |
C8 |
H8 |
1.100 |
1.090 |
C2 |
H2 |
1.080 |
1.080 |
C3 |
H3 |
1.080 |
1.080 |
C7 |
H7 |
1.080 |
1.080 |
C4 |
H4 |
1.080 |
1.080 |
C6 |
H6 |
1.080 |
1.081 |
C9 |
H91C |
1.100 |
1.089 |
C9 |
H92C |
1.100 |
1.090 |
C11 |
H11 |
1.080 |
1.080 |
C15 |
H15 |
1.080 |
1.080 |
C12 |
H12 |
1.080 |
1.080 |
C14 |
H14 |
1.080 |
1.080 |
Bond Angles for VU2
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
N2 |
C1 |
C8 |
112.0 |
109.5 |
N2 |
C1 |
H11C |
108.6 |
109.4 |
N2 |
C1 |
H12C |
108.1 |
109.5 |
C1 |
N2 |
H21N |
109.5 |
111.0 |
C1 |
N2 |
H22N |
109.5 |
111.0 |
C1 |
C8 |
C5 |
110.4 |
109.5 |
C1 |
C8 |
O1 |
111.2 |
109.5 |
C8 |
C1 |
H11C |
108.6 |
109.5 |
C8 |
C1 |
H12C |
108.0 |
109.5 |
C1 |
C8 |
H8 |
108.1 |
109.5 |
C3 |
C2 |
C7 |
120.2 |
120.0 |
C2 |
C3 |
C4 |
119.7 |
120.0 |
C3 |
C2 |
H2 |
119.9 |
120.0 |
C2 |
C3 |
H3 |
120.2 |
119.9 |
C2 |
C7 |
C6 |
120.0 |
120.0 |
C7 |
C2 |
H2 |
119.9 |
120.0 |
C2 |
C7 |
H7 |
120.0 |
120.0 |
C3 |
C4 |
C5 |
120.2 |
120.0 |
C4 |
C3 |
H3 |
120.2 |
120.0 |
C3 |
C4 |
H4 |
119.9 |
120.0 |
C7 |
C6 |
C5 |
119.8 |
120.1 |
C6 |
C7 |
H7 |
120.0 |
120.1 |
C7 |
C6 |
H6 |
120.1 |
120.0 |
C10 |
C9 |
O1 |
109.0 |
109.5 |
C9 |
C10 |
C11 |
120.1 |
120.0 |
C9 |
C10 |
C15 |
119.7 |
120.0 |
C10 |
C9 |
H91C |
109.7 |
109.5 |
C10 |
C9 |
H92C |
109.7 |
109.4 |
C9 |
O1 |
C8 |
113.8 |
114.0 |
O1 |
C9 |
H91C |
109.6 |
109.5 |
O1 |
C9 |
H92C |
109.7 |
109.5 |
C11 |
C10 |
C15 |
120.1 |
120.0 |
C10 |
C11 |
C12 |
119.9 |
120.0 |
C10 |
C11 |
H11 |
120.1 |
120.1 |
C10 |
C15 |
C14 |
120.1 |
120.0 |
C10 |
C15 |
H15 |
120.0 |
120.0 |
C11 |
C12 |
C13 |
120.1 |
120.0 |
C12 |
C11 |
H11 |
120.1 |
120.0 |
C11 |
C12 |
H12 |
120.0 |
120.0 |
C12 |
C13 |
C14 |
120.1 |
120.0 |
C12 |
C13 |
CL |
120.0 |
120.0 |
C13 |
C12 |
H12 |
120.0 |
120.0 |
C14 |
C13 |
CL |
119.9 |
120.0 |
C13 |
C14 |
C15 |
119.8 |
120.0 |
C13 |
C14 |
H14 |
120.1 |
120.0 |
C14 |
C15 |
H15 |
120.0 |
120.0 |
C15 |
C14 |
H14 |
120.1 |
120.0 |
C4 |
C5 |
C6 |
120.1 |
119.9 |
C4 |
C5 |
C8 |
120.3 |
120.0 |
C5 |
C4 |
H4 |
119.9 |
120.0 |
C6 |
C5 |
C8 |
119.6 |
120.0 |
C5 |
C6 |
H6 |
120.1 |
119.9 |
C5 |
C8 |
O1 |
110.8 |
109.5 |
C5 |
C8 |
H8 |
108.5 |
109.4 |
O1 |
C8 |
H8 |
107.7 |
109.5 |
H11C |
C1 |
H12C |
111.5 |
109.4 |
H21N |
N2 |
H22N |
109.5 |
111.0 |
H91C |
C9 |
H92C |
109.1 |
109.5 |
Torsion Angles for VU2
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
N2 |
C1 |
C8 |
C5 |
84.5 |
185.0 |
N2 |
C1 |
C8 |
O1 |
321.1 |
65.0 |
C8 |
C1 |
N2 |
H11C |
240.0 |
240.0 |
C8 |
C1 |
N2 |
H12C |
118.9 |
120.0 |
N2 |
C1 |
C8 |
H8 |
203.0 |
304.9 |
H11C |
C1 |
N2 |
H12C |
238.9 |
240.1 |
H21N |
N2 |
C1 |
H22N |
240.0 |
236.1 |
N2 |
C1 |
C8 |
H11C |
120.0 |
120.0 |
N2 |
C1 |
C8 |
H12C |
241.1 |
240.0 |
C8 |
C1 |
N2 |
H21N |
12.5 |
56.0 |
C8 |
C1 |
N2 |
H22N |
132.5 |
180.0 |
C9 |
O1 |
C8 |
C1 |
194.4 |
270.0 |
C4 |
C5 |
C8 |
C1 |
291.7 |
100.0 |
C6 |
C5 |
C8 |
C1 |
114.5 |
280.0 |
C5 |
C8 |
C1 |
O1 |
123.4 |
120.0 |
C5 |
C8 |
C1 |
H8 |
241.5 |
240.0 |
O1 |
C8 |
C1 |
H8 |
118.1 |
120.0 |
H11C |
C1 |
C8 |
H12C |
121.1 |
120.0 |
C3 |
C2 |
C7 |
C6 |
359.6 |
0.1 |
C7 |
C2 |
C3 |
H2 |
180.0 |
180.2 |
C3 |
C2 |
C7 |
H7 |
179.6 |
180.0 |
C2 |
C3 |
C4 |
C5 |
0.5 |
0.1 |
C4 |
C3 |
C2 |
H3 |
180.0 |
179.9 |
C2 |
C3 |
C4 |
H4 |
180.5 |
179.9 |
C7 |
C2 |
C3 |
C4 |
0.4 |
359.9 |
C3 |
C2 |
C7 |
H2 |
180.0 |
179.8 |
C7 |
C2 |
C3 |
H3 |
180.4 |
180.0 |
C2 |
C7 |
C6 |
C5 |
359.5 |
360.0 |
C6 |
C7 |
C2 |
H7 |
180.0 |
180.1 |
C2 |
C7 |
C6 |
H6 |
179.5 |
180.0 |
C4 |
C3 |
C2 |
C7 |
0.4 |
359.9 |
C4 |
C3 |
C2 |
H2 |
180.4 |
179.7 |
C2 |
C3 |
C4 |
H3 |
180.0 |
180.1 |
C3 |
C4 |
C5 |
C6 |
358.6 |
360.0 |
C3 |
C4 |
C5 |
C8 |
181.5 |
179.9 |
C5 |
C4 |
C3 |
H4 |
180.0 |
180.2 |
C6 |
C7 |
C2 |
H2 |
179.6 |
180.3 |
C2 |
C7 |
C6 |
H7 |
180.0 |
179.9 |
C4 |
C5 |
C6 |
C7 |
1.4 |
360.0 |
C7 |
C6 |
C5 |
C8 |
178.5 |
180.0 |
C5 |
C6 |
C7 |
H6 |
180.0 |
180.0 |
C10 |
C9 |
O1 |
C8 |
260.4 |
180.0 |
O1 |
C9 |
C10 |
H91C |
240.0 |
240.0 |
O1 |
C9 |
C10 |
H92C |
120.2 |
120.0 |
C11 |
C10 |
C9 |
C15 |
182.7 |
180.2 |
C9 |
C10 |
C11 |
C12 |
178.6 |
180.0 |
C9 |
C10 |
C11 |
H11 |
358.7 |
0.0 |
C9 |
C10 |
C15 |
C14 |
181.4 |
179.7 |
C9 |
C10 |
C15 |
H15 |
1.5 |
359.9 |
H91C |
C9 |
C10 |
H92C |
240.2 |
240.0 |
C1 |
C8 |
O1 |
C9 |
194.4 |
270.0 |
O1 |
C9 |
C10 |
C11 |
299.3 |
89.9 |
O1 |
C9 |
C10 |
C15 |
116.6 |
269.8 |
C10 |
C9 |
O1 |
H91C |
120.0 |
120.0 |
C10 |
C9 |
O1 |
H92C |
239.8 |
240.0 |
C5 |
C8 |
O1 |
C9 |
71.1 |
150.0 |
C9 |
O1 |
C8 |
H8 |
312.6 |
30.0 |
H91C |
C9 |
O1 |
H92C |
119.8 |
120.0 |
C11 |
C10 |
C9 |
O1 |
299.3 |
89.9 |
C9 |
C10 |
C11 |
C15 |
177.3 |
179.8 |
C11 |
C10 |
C9 |
H91C |
59.3 |
210.0 |
C11 |
C10 |
C9 |
H92C |
179.1 |
329.9 |
C11 |
C10 |
C15 |
C14 |
358.7 |
359.5 |
C11 |
C10 |
C15 |
H15 |
178.8 |
179.7 |
C10 |
C11 |
C12 |
C13 |
359.4 |
0.0 |
C12 |
C11 |
C10 |
H11 |
180.0 |
180.0 |
C10 |
C11 |
C12 |
H12 |
179.3 |
180.0 |
C15 |
C10 |
C9 |
O1 |
116.6 |
269.8 |
C9 |
C10 |
C15 |
C11 |
182.7 |
180.2 |
C15 |
C10 |
C9 |
H91C |
236.6 |
29.8 |
C15 |
C10 |
C9 |
H92C |
356.5 |
149.8 |
C15 |
C10 |
C11 |
C12 |
1.3 |
0.2 |
C15 |
C10 |
C11 |
H11 |
181.4 |
180.2 |
C13 |
C14 |
C15 |
C10 |
0.5 |
0.4 |
C14 |
C15 |
C10 |
H15 |
180.0 |
179.8 |
C10 |
C15 |
C14 |
H14 |
180.5 |
180.3 |
C12 |
C11 |
C10 |
C15 |
1.3 |
0.2 |
C10 |
C11 |
C12 |
H11 |
180.0 |
180.0 |
C11 |
C12 |
C13 |
C14 |
359.9 |
360.0 |
C11 |
C12 |
C13 |
CL |
180.0 |
180.0 |
C13 |
C12 |
C11 |
H12 |
180.0 |
180.0 |
C13 |
C12 |
C11 |
H11 |
179.3 |
180.0 |
C11 |
C12 |
C13 |
H12 |
180.0 |
180.0 |
C14 |
C13 |
C12 |
CL |
179.9 |
180.0 |
C12 |
C13 |
C14 |
C15 |
0.2 |
359.8 |
C12 |
C13 |
C14 |
H14 |
180.2 |
180.0 |
C10 |
C15 |
C14 |
C13 |
0.5 |
0.4 |
C12 |
C13 |
C14 |
CL |
180.1 |
180.0 |
C14 |
C13 |
C12 |
H12 |
179.9 |
180.0 |
C13 |
C14 |
C15 |
H15 |
180.4 |
180.3 |
C15 |
C14 |
C13 |
H14 |
180.0 |
179.8 |
C12 |
C13 |
CL |
C14 |
179.9 |
180.0 |
CL |
C13 |
C12 |
H12 |
360.0 |
360.0 |
CL |
C13 |
C14 |
C15 |
180.1 |
179.8 |
CL |
C13 |
C14 |
H14 |
0.1 |
360.0 |
C10 |
C15 |
C14 |
H15 |
180.0 |
180.2 |
C15 |
C14 |
C13 |
CL |
180.1 |
179.8 |
C13 |
C14 |
C15 |
H14 |
180.0 |
180.2 |
C1 |
C8 |
C5 |
C4 |
291.7 |
100.0 |
C5 |
C4 |
C3 |
H3 |
180.5 |
180.0 |
C3 |
C4 |
C5 |
H4 |
180.0 |
179.8 |
C7 |
C6 |
C5 |
C4 |
1.4 |
360.0 |
C6 |
C5 |
C4 |
C8 |
177.1 |
180.0 |
C4 |
C5 |
C6 |
H6 |
181.4 |
180.0 |
C4 |
C5 |
C8 |
O1 |
55.3 |
220.0 |
C4 |
C5 |
C8 |
H8 |
173.4 |
340.0 |
C1 |
C8 |
C5 |
C6 |
114.5 |
280.0 |
C5 |
C6 |
C7 |
H7 |
179.5 |
180.1 |
C7 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
C4 |
C5 |
C6 |
C8 |
182.9 |
180.0 |
C6 |
C5 |
C4 |
H4 |
178.6 |
180.1 |
C6 |
C5 |
C8 |
O1 |
238.2 |
40.0 |
C6 |
C5 |
C8 |
H8 |
356.3 |
160.0 |
C1 |
C8 |
C5 |
O1 |
236.4 |
240.0 |
C5 |
C8 |
C1 |
H11C |
324.5 |
65.0 |
C5 |
C8 |
C1 |
H12C |
203.4 |
305.0 |
C1 |
C8 |
C5 |
H8 |
118.3 |
120.0 |
C9 |
O1 |
C8 |
C5 |
71.1 |
150.0 |
C4 |
C5 |
C8 |
C6 |
177.1 |
180.0 |
C8 |
C5 |
C4 |
H4 |
1.5 |
0.1 |
C8 |
C5 |
C6 |
H6 |
358.5 |
0.1 |
O1 |
C8 |
C5 |
H8 |
241.9 |
240.0 |
C1 |
C8 |
O1 |
C5 |
123.2 |
120.0 |
O1 |
C8 |
C1 |
H11C |
201.1 |
305.0 |
O1 |
C8 |
C1 |
H12C |
80.0 |
185.0 |
C1 |
C8 |
O1 |
H8 |
241.8 |
240.0 |
C8 |
O1 |
C9 |
H91C |
140.4 |
60.0 |
C8 |
O1 |
C9 |
H92C |
20.6 |
300.0 |
C5 |
C8 |
O1 |
H8 |
118.5 |
120.0 |
N2 |
C1 |
H11C |
C8 |
237.9 |
240.0 |
N2 |
C1 |
H11C |
H12C |
119.0 |
120.0 |
H11C |
C1 |
N2 |
H21N |
132.5 |
176.1 |
H11C |
C1 |
N2 |
H22N |
252.5 |
300.0 |
H11C |
C1 |
C8 |
C5 |
324.5 |
65.0 |
H11C |
C1 |
C8 |
O1 |
201.1 |
305.0 |
C8 |
C1 |
H11C |
H12C |
241.1 |
240.0 |
H11C |
C1 |
C8 |
H8 |
83.0 |
185.0 |
N2 |
C1 |
H12C |
C8 |
121.4 |
120.1 |
N2 |
C1 |
H12C |
H11C |
240.7 |
240.1 |
H12C |
C1 |
N2 |
H21N |
253.6 |
296.0 |
H12C |
C1 |
N2 |
H22N |
13.6 |
59.9 |
H12C |
C1 |
C8 |
C5 |
203.4 |
305.0 |
H12C |
C1 |
C8 |
O1 |
80.0 |
185.0 |
C8 |
C1 |
H12C |
H11C |
119.3 |
120.0 |
H12C |
C1 |
C8 |
H8 |
322.0 |
65.0 |
H21N |
N2 |
C1 |
C8 |
12.5 |
56.0 |
H21N |
N2 |
C1 |
H11C |
132.5 |
176.1 |
H21N |
N2 |
C1 |
H12C |
253.6 |
296.0 |
C1 |
N2 |
H21N |
H22N |
120.0 |
124.0 |
H22N |
N2 |
C1 |
C8 |
132.5 |
180.0 |
H22N |
N2 |
C1 |
H11C |
252.5 |
300.0 |
H22N |
N2 |
C1 |
H12C |
13.6 |
59.9 |
C1 |
N2 |
H22N |
H21N |
239.9 |
236.1 |
C1 |
C8 |
H8 |
C5 |
240.2 |
240.0 |
C1 |
C8 |
H8 |
O1 |
120.2 |
120.0 |
H8 |
C8 |
C1 |
H11C |
83.0 |
185.0 |
H8 |
C8 |
C1 |
H12C |
322.0 |
65.0 |
C5 |
C8 |
H8 |
O1 |
240.0 |
240.0 |
C3 |
C2 |
H2 |
C7 |
180.0 |
180.2 |
H2 |
C2 |
C3 |
C4 |
180.4 |
179.7 |
H2 |
C2 |
C3 |
H3 |
0.4 |
359.8 |
H2 |
C2 |
C7 |
C6 |
179.6 |
180.3 |
H2 |
C2 |
C7 |
H7 |
359.6 |
0.2 |
H3 |
C3 |
C2 |
C7 |
180.4 |
180.0 |
C2 |
C3 |
H3 |
C4 |
180.0 |
179.9 |
H3 |
C3 |
C2 |
H2 |
0.4 |
359.8 |
H3 |
C3 |
C4 |
C5 |
180.5 |
180.0 |
H3 |
C3 |
C4 |
H4 |
0.5 |
359.9 |
C2 |
C7 |
H7 |
C6 |
180.0 |
180.1 |
H7 |
C7 |
C2 |
H2 |
359.6 |
0.2 |
H7 |
C7 |
C6 |
C5 |
179.5 |
180.1 |
H7 |
C7 |
C6 |
H6 |
359.5 |
0.0 |
C3 |
C4 |
H4 |
C5 |
180.0 |
180.2 |
H4 |
C4 |
C3 |
H3 |
0.5 |
359.9 |
H4 |
C4 |
C5 |
C6 |
178.6 |
180.1 |
H4 |
C4 |
C5 |
C8 |
1.5 |
0.1 |
C7 |
C6 |
H6 |
C5 |
180.0 |
180.0 |
H6 |
C6 |
C7 |
H7 |
359.5 |
0.0 |
H6 |
C6 |
C5 |
C8 |
358.5 |
0.1 |
C10 |
C9 |
H91C |
O1 |
240.4 |
240.0 |
H91C |
C9 |
C10 |
C11 |
59.3 |
210.0 |
H91C |
C9 |
C10 |
C15 |
236.6 |
29.8 |
C10 |
C9 |
H91C |
H92C |
120.2 |
120.0 |
H91C |
C9 |
O1 |
C8 |
140.4 |
60.0 |
O1 |
C9 |
H91C |
H92C |
239.9 |
240.0 |
C10 |
C9 |
H92C |
O1 |
119.7 |
120.0 |
H92C |
C9 |
C10 |
C11 |
179.1 |
329.9 |
H92C |
C9 |
C10 |
C15 |
356.5 |
149.8 |
C10 |
C9 |
H92C |
H91C |
239.8 |
240.0 |
H92C |
C9 |
O1 |
C8 |
20.6 |
300.0 |
O1 |
C9 |
H92C |
H91C |
120.1 |
120.0 |
H11 |
C11 |
C10 |
C15 |
181.4 |
180.2 |
C10 |
C11 |
H11 |
C12 |
180.0 |
180.0 |
H11 |
C11 |
C12 |
C13 |
179.3 |
180.0 |
H11 |
C11 |
C12 |
H12 |
359.3 |
0.0 |
C10 |
C15 |
H15 |
C14 |
180.0 |
179.8 |
H15 |
C15 |
C14 |
H14 |
0.5 |
0.1 |
C11 |
C12 |
H12 |
C13 |
180.0 |
180.0 |
H12 |
C12 |
C11 |
H11 |
359.3 |
0.0 |
H12 |
C12 |
C13 |
C14 |
179.9 |
180.0 |
H12 |
C12 |
C13 |
CL |
360.0 |
360.0 |
H14 |
C14 |
C13 |
CL |
0.1 |
360.0 |
C13 |
C14 |
H14 |
C15 |
180.0 |
179.8 |
H14 |
C14 |
C15 |
H15 |
0.5 |
0.1 |