PDB Chemical Component VSF
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for VSF
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
CAV |
CAU |
1.525 |
1.530 |
CAV |
CAQ |
1.526 |
1.532 |
C2 |
N3 |
1.332 |
1.315 |
C2 |
N1 |
1.339 |
1.322 |
N3 |
C4 |
1.357 |
1.333 |
CAU |
OAT |
1.431 |
1.429 |
N1 |
C6 |
1.354 |
1.330 |
OAT |
CAS |
1.438 |
1.429 |
C4 |
NAG |
1.349 |
1.368 |
C4 |
C5 |
1.390 |
1.406 |
CAQ |
NAG |
1.488 |
1.465 |
CAQ |
CAR |
1.525 |
1.531 |
C6 |
C5 |
1.389 |
1.402 |
C6 |
NAK |
1.353 |
1.383 |
NAG |
CAH |
1.341 |
1.370 |
C5 |
CAI |
1.394 |
1.469 |
CAP |
CAO |
1.390 |
1.379 |
CAP |
CAJ |
1.389 |
1.395 |
CAH |
CAI |
1.389 |
1.356 |
CAI |
CAJ |
1.497 |
1.482 |
CAS |
CAR |
1.530 |
1.531 |
CAO |
CAN |
1.383 |
1.388 |
CAJ |
CAL |
1.395 |
1.394 |
CAN |
OBD |
1.373 |
1.359 |
CAN |
CAM |
1.394 |
1.389 |
CAL |
CAM |
1.398 |
1.379 |
OBD |
CBE |
1.370 |
1.358 |
CBE |
CBJ |
1.388 |
1.388 |
CBE |
CBF |
1.391 |
1.387 |
CBJ |
CBI |
1.389 |
1.382 |
CBF |
CBG |
1.389 |
1.382 |
CBI |
CBH |
1.389 |
1.383 |
CBG |
CBH |
1.393 |
1.382 |
NAK |
H1 |
1.000 |
0.970 |
NAK |
H2 |
1.000 |
0.970 |
C2 |
H3 |
1.080 |
1.080 |
CAQ |
H4 |
1.100 |
1.090 |
CAV |
H5 |
1.100 |
1.090 |
CAV |
H6 |
1.100 |
1.090 |
CAU |
H7 |
1.100 |
1.090 |
CAU |
H8 |
1.100 |
1.090 |
CAS |
H9 |
1.100 |
1.090 |
CAS |
H10 |
1.100 |
1.090 |
CAR |
H11 |
1.100 |
1.090 |
CAR |
H12 |
1.100 |
1.090 |
CAH |
H13 |
1.080 |
1.080 |
CAL |
H14 |
1.080 |
1.079 |
CAM |
H15 |
1.080 |
1.080 |
CAO |
H16 |
1.080 |
1.079 |
CAP |
H17 |
1.080 |
1.080 |
CBJ |
H18 |
1.080 |
1.080 |
CBI |
H19 |
1.080 |
1.080 |
CBH |
H20 |
1.080 |
1.080 |
CBG |
H21 |
1.080 |
1.081 |
CBF |
H22 |
1.080 |
1.081 |
Bond Angles for VSF
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
CAV |
CAU |
OAT |
108.2 |
109.4 |
CAU |
CAV |
H5 |
109.4 |
109.6 |
CAU |
CAV |
H6 |
109.4 |
109.6 |
CAV |
CAU |
H7 |
109.8 |
109.5 |
CAV |
CAU |
H8 |
109.8 |
109.5 |
CAV |
CAQ |
CAR |
109.6 |
109.0 |
CAV |
CAQ |
H4 |
109.4 |
109.6 |
C2 |
N3 |
C4 |
120.8 |
120.8 |
N3 |
C2 |
H3 |
119.5 |
118.7 |
N3 |
C4 |
NAG |
132.2 |
134.1 |
N3 |
C4 |
C5 |
119.5 |
118.5 |
CAU |
OAT |
CAS |
111.6 |
114.1 |
OAT |
CAU |
H7 |
109.8 |
109.5 |
OAT |
CAU |
H8 |
109.8 |
109.5 |
N1 |
C6 |
C5 |
119.5 |
118.4 |
OAT |
CAS |
CAR |
110.5 |
109.4 |
OAT |
CAS |
H9 |
109.2 |
109.5 |
OAT |
CAS |
H10 |
109.2 |
109.5 |
C5 |
C4 |
NAG |
108.3 |
107.4 |
C4 |
NAG |
CAH |
109.1 |
110.3 |
C6 |
C5 |
C4 |
118.3 |
118.7 |
C4 |
C5 |
CAI |
107.2 |
106.2 |
CAQ |
NAG |
CAH |
124.8 |
124.8 |
CAQ |
CAR |
CAS |
111.6 |
109.2 |
CAR |
CAQ |
H4 |
109.4 |
109.6 |
CAQ |
CAR |
H11 |
108.9 |
109.5 |
CAQ |
CAR |
H12 |
109.0 |
109.6 |
C6 |
C5 |
CAI |
134.4 |
135.0 |
C6 |
NAK |
H1 |
109.5 |
120.0 |
C6 |
NAK |
H2 |
109.5 |
120.0 |
NAG |
CAH |
CAI |
109.3 |
109.6 |
NAG |
CAH |
H13 |
125.4 |
125.2 |
C5 |
CAI |
CAH |
106.1 |
106.5 |
C5 |
CAI |
CAJ |
129.4 |
126.8 |
CAP |
CAO |
H16 |
119.7 |
120.0 |
CAH |
CAI |
CAJ |
124.4 |
126.7 |
CAI |
CAH |
H13 |
125.3 |
125.2 |
CAI |
CAJ |
CAL |
123.0 |
120.1 |
CAR |
CAS |
H9 |
109.2 |
109.5 |
CAR |
CAS |
H10 |
109.2 |
109.5 |
CAS |
CAR |
H11 |
108.9 |
109.5 |
CAS |
CAR |
H12 |
108.9 |
109.5 |
CAO |
CAN |
OBD |
118.2 |
119.9 |
CAJ |
CAL |
CAM |
120.2 |
119.9 |
CAJ |
CAL |
H14 |
119.9 |
120.0 |
CAN |
OBD |
CBE |
123.9 |
118.0 |
CAN |
CAM |
H15 |
119.8 |
120.0 |
CAM |
CAL |
H14 |
119.9 |
120.0 |
CAL |
CAM |
H15 |
119.8 |
120.0 |
OBD |
CBE |
CBJ |
120.7 |
120.0 |
OBD |
CBE |
CBF |
119.2 |
120.1 |
CBJ |
CBE |
CBF |
120.1 |
119.9 |
CBE |
CBJ |
CBI |
120.3 |
119.9 |
CBE |
CBJ |
H18 |
119.9 |
120.0 |
CBE |
CBF |
CBG |
119.8 |
120.0 |
CBE |
CBF |
H22 |
120.1 |
120.0 |
CBJ |
CBI |
CBH |
119.7 |
120.1 |
CBI |
CBJ |
H18 |
119.8 |
120.0 |
CBJ |
CBI |
H19 |
120.1 |
119.9 |
CBF |
CBG |
H21 |
119.9 |
119.9 |
CBH |
CBI |
H19 |
120.2 |
120.0 |
CBI |
CBH |
H20 |
119.9 |
119.9 |
CBG |
CBH |
H20 |
120.0 |
120.0 |
H1 |
NAK |
H2 |
109.5 |
120.0 |
H5 |
CAV |
H6 |
109.5 |
109.5 |
H7 |
CAU |
H8 |
109.5 |
109.5 |
H9 |
CAS |
H10 |
109.5 |
109.5 |
H11 |
CAR |
H12 |
109.5 |
109.5 |
Torsion Angles for VSF
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
CAU |
CAV |
CAQ |
CAR |
347.5 |
303.0 |
CAU |
CAV |
CAQ |
H4 |
107.5 |
63.0 |
CAV |
CAU |
OAT |
CAS |
73.0 |
298.9 |
OAT |
CAU |
CAV |
H7 |
240.2 |
240.0 |
OAT |
CAU |
CAV |
H8 |
119.8 |
120.0 |
H5 |
CAV |
CAU |
H6 |
240.1 |
120.2 |
H7 |
CAU |
CAV |
H8 |
239.6 |
240.0 |
CAV |
CAQ |
NAG |
CAH |
63.8 |
59.6 |
CAV |
CAQ |
CAR |
CAS |
58.3 |
57.0 |
CAR |
CAQ |
CAV |
H4 |
240.0 |
240.0 |
CAV |
CAQ |
CAR |
H11 |
178.6 |
176.9 |
CAV |
CAQ |
CAR |
H12 |
297.9 |
297.1 |
C2 |
N3 |
C4 |
NAG |
180.8 |
180.0 |
C2 |
N3 |
C4 |
C5 |
0.3 |
360.0 |
C2 |
N1 |
C6 |
C5 |
0.3 |
359.9 |
C4 |
N3 |
C2 |
H3 |
179.7 |
180.0 |
C5 |
C4 |
N3 |
NAG |
179.5 |
180.0 |
N3 |
C4 |
NAG |
CAH |
180.3 |
180.0 |
C6 |
C5 |
C4 |
N3 |
0.1 |
360.0 |
N3 |
C4 |
C5 |
CAI |
180.3 |
180.2 |
OAT |
CAU |
CAV |
H5 |
70.0 |
297.7 |
OAT |
CAU |
CAV |
H6 |
189.9 |
177.5 |
CAV |
CAU |
OAT |
H7 |
119.8 |
120.0 |
CAV |
CAU |
OAT |
H8 |
240.2 |
240.0 |
CAU |
OAT |
CAS |
CAR |
335.0 |
61.1 |
CAU |
OAT |
CAS |
H9 |
95.1 |
181.1 |
CAU |
OAT |
CAS |
H10 |
214.8 |
301.2 |
H7 |
CAU |
OAT |
H8 |
120.4 |
120.0 |
N1 |
C6 |
C5 |
C4 |
359.6 |
0.1 |
N1 |
C6 |
C5 |
CAI |
179.3 |
179.8 |
N1 |
C6 |
NAK |
H1 |
0.0 |
180.2 |
N1 |
C6 |
NAK |
H2 |
120.0 |
359.9 |
CAS |
OAT |
CAU |
H7 |
313.2 |
178.9 |
CAS |
OAT |
CAU |
H8 |
192.8 |
58.9 |
CAQ |
CAR |
CAS |
OAT |
320.5 |
302.4 |
CAR |
CAS |
OAT |
H9 |
239.8 |
240.0 |
CAR |
CAS |
OAT |
H10 |
120.1 |
120.0 |
OAT |
CAS |
CAR |
H11 |
200.2 |
182.5 |
OAT |
CAS |
CAR |
H12 |
80.8 |
62.3 |
H9 |
CAS |
OAT |
H10 |
240.3 |
239.9 |
N3 |
C4 |
NAG |
C5 |
179.6 |
180.0 |
C6 |
C5 |
C4 |
NAG |
179.7 |
180.0 |
NAG |
C4 |
C5 |
CAI |
359.9 |
0.2 |
CAQ |
NAG |
C4 |
CAH |
179.0 |
180.0 |
C4 |
NAG |
CAH |
CAI |
358.8 |
359.8 |
C4 |
NAG |
CAH |
H13 |
178.8 |
180.0 |
N3 |
C4 |
C5 |
NAG |
180.4 |
180.0 |
C5 |
C4 |
NAG |
CAH |
0.8 |
360.0 |
C6 |
C5 |
C4 |
CAI |
179.8 |
179.8 |
C4 |
C5 |
CAI |
CAH |
359.3 |
359.6 |
C4 |
C5 |
CAI |
CAJ |
181.7 |
179.8 |
C4 |
NAG |
CAQ |
CAH |
181.1 |
179.9 |
CAQ |
NAG |
CAH |
CAI |
179.7 |
179.7 |
CAQ |
NAG |
CAH |
H13 |
359.7 |
360.0 |
CAV |
CAQ |
CAR |
H4 |
120.0 |
120.0 |
OAT |
CAS |
CAR |
CAQ |
320.5 |
302.4 |
CAR |
CAQ |
NAG |
CAH |
303.9 |
300.1 |
CAQ |
CAR |
CAS |
H9 |
200.3 |
182.4 |
CAQ |
CAR |
CAS |
H10 |
80.6 |
62.3 |
CAS |
CAR |
CAQ |
H11 |
239.7 |
240.2 |
CAS |
CAR |
CAQ |
H12 |
120.3 |
120.0 |
H11 |
CAR |
CAQ |
H12 |
240.6 |
239.8 |
N3 |
C4 |
C5 |
C6 |
0.1 |
360.0 |
C4 |
C5 |
C6 |
CAI |
180.3 |
180.3 |
C5 |
C6 |
NAK |
H1 |
179.6 |
0.1 |
C5 |
C6 |
NAK |
H2 |
299.6 |
179.8 |
C6 |
C5 |
CAI |
CAH |
179.6 |
179.9 |
C6 |
C5 |
CAI |
CAJ |
1.9 |
0.1 |
H1 |
NAK |
C6 |
H2 |
240.0 |
180.3 |
C5 |
CAI |
CAH |
NAG |
1.2 |
0.3 |
NAG |
CAH |
CAI |
CAJ |
179.0 |
180.2 |
CAI |
CAH |
NAG |
H13 |
180.0 |
179.8 |
CAI |
C5 |
C4 |
NAG |
359.9 |
0.2 |
C6 |
C5 |
CAI |
C4 |
180.3 |
180.3 |
NAG |
CAH |
CAI |
C5 |
1.2 |
0.3 |
CAH |
CAI |
C5 |
CAJ |
177.7 |
179.8 |
C5 |
CAI |
CAH |
H13 |
181.2 |
180.1 |
C5 |
CAI |
CAJ |
CAL |
229.1 |
129.9 |
CAP |
CAO |
CAN |
OBD |
180.3 |
179.7 |
CAP |
CAJ |
CAL |
H14 |
177.7 |
180.3 |
NAG |
CAH |
CAI |
H13 |
180.0 |
180.2 |
C5 |
CAI |
CAH |
CAJ |
182.2 |
180.2 |
CAH |
CAI |
CAJ |
CAL |
51.8 |
310.1 |
C5 |
CAI |
CAJ |
CAH |
177.3 |
179.8 |
CAJ |
CAI |
CAH |
H13 |
359.0 |
360.0 |
CAI |
CAJ |
CAL |
CAM |
182.0 |
180.0 |
CAI |
CAJ |
CAL |
H14 |
2.0 |
0.0 |
OAT |
CAS |
CAR |
H9 |
120.2 |
120.0 |
OAT |
CAS |
CAR |
H10 |
239.9 |
240.1 |
CAS |
CAR |
CAQ |
H4 |
298.3 |
297.0 |
CAQ |
CAR |
CAS |
H11 |
120.3 |
119.9 |
CAQ |
CAR |
CAS |
H12 |
239.6 |
240.0 |
H9 |
CAS |
CAR |
H10 |
119.7 |
120.1 |
H11 |
CAR |
CAS |
H12 |
119.3 |
120.1 |
CAO |
CAN |
OBD |
CBE |
221.6 |
67.4 |
CAO |
CAN |
CAM |
H15 |
179.5 |
180.1 |
CAM |
CAL |
CAJ |
H14 |
180.0 |
179.9 |
CAJ |
CAL |
CAM |
H15 |
181.2 |
180.0 |
OBD |
CAN |
CAM |
H15 |
0.1 |
0.0 |
CAN |
OBD |
CBE |
CBJ |
47.5 |
6.1 |
CAN |
OBD |
CBE |
CBF |
228.0 |
185.8 |
CAN |
CAM |
CAL |
H14 |
181.2 |
180.0 |
CAL |
CAM |
CAN |
H15 |
180.0 |
179.9 |
CAJ |
CAL |
CAM |
H14 |
180.0 |
180.1 |
CAN |
CAM |
CAL |
H15 |
180.0 |
180.1 |
CBJ |
CBE |
OBD |
CBF |
179.5 |
180.3 |
OBD |
CBE |
CBJ |
CBI |
180.2 |
180.0 |
OBD |
CBE |
CBJ |
H18 |
0.2 |
359.9 |
OBD |
CBE |
CBF |
CBG |
179.8 |
179.7 |
OBD |
CBE |
CBF |
H22 |
359.8 |
360.0 |
OBD |
CBE |
CBJ |
CBF |
180.5 |
179.7 |
CBJ |
CBE |
CBF |
CBG |
0.3 |
359.4 |
CBJ |
CBE |
CBF |
H22 |
180.3 |
179.7 |
CBE |
CBJ |
CBI |
CBH |
0.1 |
359.9 |
CBI |
CBJ |
CBE |
H18 |
180.0 |
180.2 |
CBE |
CBJ |
CBI |
H19 |
180.1 |
180.0 |
OBD |
CBE |
CBF |
CBJ |
179.5 |
180.3 |
CBF |
CBE |
CBJ |
CBI |
359.7 |
0.3 |
CBF |
CBE |
CBJ |
H18 |
179.7 |
180.2 |
CBE |
CBF |
CBG |
H21 |
179.8 |
180.3 |
CBI |
CBJ |
CBE |
CBF |
359.7 |
0.3 |
CBE |
CBJ |
CBI |
H18 |
180.0 |
179.8 |
CBH |
CBI |
CBJ |
H19 |
180.0 |
180.0 |
CBJ |
CBI |
CBH |
H20 |
180.0 |
180.0 |
CBE |
CBF |
CBG |
H22 |
180.0 |
180.3 |
CBF |
CBG |
CBH |
H20 |
180.0 |
179.7 |
CBH |
CBI |
CBJ |
H18 |
180.1 |
180.1 |
CBJ |
CBI |
CBH |
H19 |
180.0 |
180.0 |
CBG |
CBH |
CBI |
H20 |
180.0 |
180.0 |
CBE |
CBF |
CBG |
CBH |
359.8 |
0.6 |
CBG |
CBH |
CBI |
H19 |
180.0 |
180.0 |
CBI |
CBH |
CBG |
H20 |
180.0 |
180.0 |
C6 |
NAK |
H1 |
H2 |
120.0 |
179.7 |
C6 |
NAK |
H2 |
H1 |
240.0 |
180.3 |
H3 |
C2 |
N3 |
C4 |
179.7 |
180.0 |
CAV |
CAQ |
H4 |
CAR |
239.9 |
240.4 |
H4 |
CAQ |
NAG |
CAH |
184.4 |
179.9 |
H4 |
CAQ |
CAR |
CAS |
298.3 |
297.0 |
H4 |
CAQ |
CAR |
H11 |
58.6 |
56.9 |
H4 |
CAQ |
CAR |
H12 |
178.0 |
177.1 |
H5 |
CAV |
CAU |
OAT |
70.0 |
297.7 |
CAU |
CAV |
H5 |
H6 |
119.8 |
239.8 |
H5 |
CAV |
CAU |
H7 |
189.8 |
57.7 |
H5 |
CAV |
CAU |
H8 |
310.2 |
177.7 |
H5 |
CAV |
CAQ |
CAR |
227.5 |
62.9 |
H5 |
CAV |
CAQ |
H4 |
347.5 |
182.9 |
H6 |
CAV |
CAU |
OAT |
189.9 |
177.5 |
CAU |
CAV |
H6 |
H5 |
240.2 |
120.2 |
H6 |
CAV |
CAU |
H7 |
309.7 |
297.5 |
H6 |
CAV |
CAU |
H8 |
70.1 |
57.5 |
H6 |
CAV |
CAQ |
CAR |
107.6 |
183.1 |
H6 |
CAV |
CAQ |
H4 |
227.6 |
303.0 |
CAV |
CAU |
H7 |
OAT |
241.2 |
240.0 |
H7 |
CAU |
CAV |
H5 |
189.8 |
57.7 |
H7 |
CAU |
CAV |
H6 |
309.7 |
297.5 |
CAV |
CAU |
H7 |
H8 |
120.6 |
120.0 |
H7 |
CAU |
OAT |
CAS |
313.2 |
178.9 |
OAT |
CAU |
H7 |
H8 |
239.4 |
240.0 |
CAV |
CAU |
H8 |
OAT |
118.8 |
120.0 |
H8 |
CAU |
CAV |
H5 |
310.2 |
177.7 |
H8 |
CAU |
CAV |
H6 |
70.1 |
57.5 |
CAV |
CAU |
H8 |
H7 |
239.4 |
240.0 |
H8 |
CAU |
OAT |
CAS |
192.8 |
58.9 |
OAT |
CAU |
H8 |
H7 |
120.6 |
120.0 |
OAT |
CAS |
H9 |
CAR |
239.1 |
240.1 |
OAT |
CAS |
H9 |
H10 |
119.5 |
120.0 |
CAR |
CAS |
H9 |
H10 |
240.5 |
239.9 |
H9 |
CAS |
CAR |
H11 |
80.0 |
62.5 |
H9 |
CAS |
CAR |
H12 |
320.7 |
302.4 |
OAT |
CAS |
H10 |
CAR |
120.9 |
119.9 |
OAT |
CAS |
H10 |
H9 |
240.4 |
240.0 |
CAR |
CAS |
H10 |
H9 |
119.5 |
120.1 |
H10 |
CAS |
CAR |
H11 |
320.3 |
302.4 |
H10 |
CAS |
CAR |
H12 |
201.0 |
182.3 |
CAQ |
CAR |
H11 |
CAS |
238.1 |
240.3 |
H11 |
CAR |
CAQ |
H4 |
58.6 |
56.9 |
CAQ |
CAR |
H11 |
H12 |
119.1 |
120.2 |
H11 |
CAR |
CAS |
H9 |
80.0 |
62.5 |
H11 |
CAR |
CAS |
H10 |
320.3 |
302.4 |
CAS |
CAR |
H11 |
H12 |
241.0 |
239.9 |
CAQ |
CAR |
H12 |
CAS |
122.0 |
119.7 |
H12 |
CAR |
CAQ |
H4 |
178.0 |
177.1 |
CAQ |
CAR |
H12 |
H11 |
241.0 |
239.8 |
H12 |
CAR |
CAS |
H9 |
320.7 |
302.4 |
H12 |
CAR |
CAS |
H10 |
201.0 |
182.3 |
CAS |
CAR |
H12 |
H11 |
119.0 |
120.1 |
NAG |
CAH |
H13 |
CAI |
180.0 |
179.8 |
H13 |
CAH |
CAI |
CAJ |
359.0 |
360.0 |
CAJ |
CAL |
H14 |
CAM |
180.0 |
179.9 |
H14 |
CAL |
CAM |
H15 |
1.2 |
359.9 |
H15 |
CAM |
CAL |
H14 |
1.2 |
359.9 |
H16 |
CAO |
CAN |
OBD |
0.2 |
0.1 |
H17 |
CAP |
CAO |
H16 |
358.1 |
359.6 |
H18 |
CBJ |
CBE |
CBF |
179.7 |
180.2 |
CBE |
CBJ |
H18 |
CBI |
180.0 |
180.2 |
H18 |
CBJ |
CBI |
CBH |
180.1 |
180.1 |
H18 |
CBJ |
CBI |
H19 |
0.1 |
0.1 |
CBJ |
CBI |
H19 |
CBH |
180.0 |
180.0 |
H19 |
CBI |
CBJ |
H18 |
0.1 |
0.1 |
H19 |
CBI |
CBH |
H20 |
0.0 |
360.0 |
H20 |
CBH |
CBI |
H19 |
0.0 |
360.0 |
H21 |
CBG |
CBH |
H20 |
0.0 |
360.0 |
CBE |
CBF |
H22 |
CBG |
180.0 |
179.7 |
H22 |
CBF |
CBG |
H21 |
359.8 |
0.0 |