PDB Chemical Component VSF

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for VSF

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
CAV CAU 1.525 1.530
CAV CAQ 1.526 1.532
C2 N3 1.332 1.315
C2 N1 1.339 1.322
N3 C4 1.357 1.333
CAU OAT 1.431 1.429
N1 C6 1.354 1.330
OAT CAS 1.438 1.429
C4 NAG 1.349 1.368
C4 C5 1.390 1.406
CAQ NAG 1.488 1.465
CAQ CAR 1.525 1.531
C6 C5 1.389 1.402
C6 NAK 1.353 1.383
NAG CAH 1.341 1.370
C5 CAI 1.394 1.469
CAP CAO 1.390 1.379
CAP CAJ 1.389 1.395
CAH CAI 1.389 1.356
CAI CAJ 1.497 1.482
CAS CAR 1.530 1.531
CAO CAN 1.383 1.388
CAJ CAL 1.395 1.394
CAN OBD 1.373 1.359
CAN CAM 1.394 1.389
CAL CAM 1.398 1.379
OBD CBE 1.370 1.358
CBE CBJ 1.388 1.388
CBE CBF 1.391 1.387
CBJ CBI 1.389 1.382
CBF CBG 1.389 1.382
CBI CBH 1.389 1.383
CBG CBH 1.393 1.382
NAK H1 1.000 0.970
NAK H2 1.000 0.970
C2 H3 1.080 1.080
CAQ H4 1.100 1.090
CAV H5 1.100 1.090
CAV H6 1.100 1.090
CAU H7 1.100 1.090
CAU H8 1.100 1.090
CAS H9 1.100 1.090
CAS H10 1.100 1.090
CAR H11 1.100 1.090
CAR H12 1.100 1.090
CAH H13 1.080 1.080
CAL H14 1.080 1.079
CAM H15 1.080 1.080
CAO H16 1.080 1.079
CAP H17 1.080 1.080
CBJ H18 1.080 1.080
CBI H19 1.080 1.080
CBH H20 1.080 1.080
CBG H21 1.080 1.081
CBF H22 1.080 1.081

Bond Angles for VSF

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CAV CAU OAT 108.2 109.4
CAU CAV H5 109.4 109.6
CAU CAV H6 109.4 109.6
CAV CAU H7 109.8 109.5
CAV CAU H8 109.8 109.5
CAV CAQ CAR 109.6 109.0
CAV CAQ H4 109.4 109.6
C2 N3 C4 120.8 120.8
N3 C2 H3 119.5 118.7
N3 C4 NAG 132.2 134.1
N3 C4 C5 119.5 118.5
CAU OAT CAS 111.6 114.1
OAT CAU H7 109.8 109.5
OAT CAU H8 109.8 109.5
N1 C6 C5 119.5 118.4
OAT CAS CAR 110.5 109.4
OAT CAS H9 109.2 109.5
OAT CAS H10 109.2 109.5
C5 C4 NAG 108.3 107.4
C4 NAG CAH 109.1 110.3
C6 C5 C4 118.3 118.7
C4 C5 CAI 107.2 106.2
CAQ NAG CAH 124.8 124.8
CAQ CAR CAS 111.6 109.2
CAR CAQ H4 109.4 109.6
CAQ CAR H11 108.9 109.5
CAQ CAR H12 109.0 109.6
C6 C5 CAI 134.4 135.0
C6 NAK H1 109.5 120.0
C6 NAK H2 109.5 120.0
NAG CAH CAI 109.3 109.6
NAG CAH H13 125.4 125.2
C5 CAI CAH 106.1 106.5
C5 CAI CAJ 129.4 126.8
CAP CAO H16 119.7 120.0
CAH CAI CAJ 124.4 126.7
CAI CAH H13 125.3 125.2
CAI CAJ CAL 123.0 120.1
CAR CAS H9 109.2 109.5
CAR CAS H10 109.2 109.5
CAS CAR H11 108.9 109.5
CAS CAR H12 108.9 109.5
CAO CAN OBD 118.2 119.9
CAJ CAL CAM 120.2 119.9
CAJ CAL H14 119.9 120.0
CAN OBD CBE 123.9 118.0
CAN CAM H15 119.8 120.0
CAM CAL H14 119.9 120.0
CAL CAM H15 119.8 120.0
OBD CBE CBJ 120.7 120.0
OBD CBE CBF 119.2 120.1
CBJ CBE CBF 120.1 119.9
CBE CBJ CBI 120.3 119.9
CBE CBJ H18 119.9 120.0
CBE CBF CBG 119.8 120.0
CBE CBF H22 120.1 120.0
CBJ CBI CBH 119.7 120.1
CBI CBJ H18 119.8 120.0
CBJ CBI H19 120.1 119.9
CBF CBG H21 119.9 119.9
CBH CBI H19 120.2 120.0
CBI CBH H20 119.9 119.9
CBG CBH H20 120.0 120.0
H1 NAK H2 109.5 120.0
H5 CAV H6 109.5 109.5
H7 CAU H8 109.5 109.5
H9 CAS H10 109.5 109.5
H11 CAR H12 109.5 109.5

Torsion Angles for VSF

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
CAU CAV CAQ CAR 347.5 303.0
CAU CAV CAQ H4 107.5 63.0
CAV CAU OAT CAS 73.0 298.9
OAT CAU CAV H7 240.2 240.0
OAT CAU CAV H8 119.8 120.0
H5 CAV CAU H6 240.1 120.2
H7 CAU CAV H8 239.6 240.0
CAV CAQ NAG CAH 63.8 59.6
CAV CAQ CAR CAS 58.3 57.0
CAR CAQ CAV H4 240.0 240.0
CAV CAQ CAR H11 178.6 176.9
CAV CAQ CAR H12 297.9 297.1
C2 N3 C4 NAG 180.8 180.0
C2 N3 C4 C5 0.3 360.0
C2 N1 C6 C5 0.3 359.9
C4 N3 C2 H3 179.7 180.0
C5 C4 N3 NAG 179.5 180.0
N3 C4 NAG CAH 180.3 180.0
C6 C5 C4 N3 0.1 360.0
N3 C4 C5 CAI 180.3 180.2
OAT CAU CAV H5 70.0 297.7
OAT CAU CAV H6 189.9 177.5
CAV CAU OAT H7 119.8 120.0
CAV CAU OAT H8 240.2 240.0
CAU OAT CAS CAR 335.0 61.1
CAU OAT CAS H9 95.1 181.1
CAU OAT CAS H10 214.8 301.2
H7 CAU OAT H8 120.4 120.0
N1 C6 C5 C4 359.6 0.1
N1 C6 C5 CAI 179.3 179.8
N1 C6 NAK H1 0.0 180.2
N1 C6 NAK H2 120.0 359.9
CAS OAT CAU H7 313.2 178.9
CAS OAT CAU H8 192.8 58.9
CAQ CAR CAS OAT 320.5 302.4
CAR CAS OAT H9 239.8 240.0
CAR CAS OAT H10 120.1 120.0
OAT CAS CAR H11 200.2 182.5
OAT CAS CAR H12 80.8 62.3
H9 CAS OAT H10 240.3 239.9
N3 C4 NAG C5 179.6 180.0
C6 C5 C4 NAG 179.7 180.0
NAG C4 C5 CAI 359.9 0.2
CAQ NAG C4 CAH 179.0 180.0
C4 NAG CAH CAI 358.8 359.8
C4 NAG CAH H13 178.8 180.0
N3 C4 C5 NAG 180.4 180.0
C5 C4 NAG CAH 0.8 360.0
C6 C5 C4 CAI 179.8 179.8
C4 C5 CAI CAH 359.3 359.6
C4 C5 CAI CAJ 181.7 179.8
C4 NAG CAQ CAH 181.1 179.9
CAQ NAG CAH CAI 179.7 179.7
CAQ NAG CAH H13 359.7 360.0
CAV CAQ CAR H4 120.0 120.0
OAT CAS CAR CAQ 320.5 302.4
CAR CAQ NAG CAH 303.9 300.1
CAQ CAR CAS H9 200.3 182.4
CAQ CAR CAS H10 80.6 62.3
CAS CAR CAQ H11 239.7 240.2
CAS CAR CAQ H12 120.3 120.0
H11 CAR CAQ H12 240.6 239.8
N3 C4 C5 C6 0.1 360.0
C4 C5 C6 CAI 180.3 180.3
C5 C6 NAK H1 179.6 0.1
C5 C6 NAK H2 299.6 179.8
C6 C5 CAI CAH 179.6 179.9
C6 C5 CAI CAJ 1.9 0.1
H1 NAK C6 H2 240.0 180.3
C5 CAI CAH NAG 1.2 0.3
NAG CAH CAI CAJ 179.0 180.2
CAI CAH NAG H13 180.0 179.8
CAI C5 C4 NAG 359.9 0.2
C6 C5 CAI C4 180.3 180.3
NAG CAH CAI C5 1.2 0.3
CAH CAI C5 CAJ 177.7 179.8
C5 CAI CAH H13 181.2 180.1
C5 CAI CAJ CAL 229.1 129.9
CAP CAO CAN OBD 180.3 179.7
CAP CAJ CAL H14 177.7 180.3
NAG CAH CAI H13 180.0 180.2
C5 CAI CAH CAJ 182.2 180.2
CAH CAI CAJ CAL 51.8 310.1
C5 CAI CAJ CAH 177.3 179.8
CAJ CAI CAH H13 359.0 360.0
CAI CAJ CAL CAM 182.0 180.0
CAI CAJ CAL H14 2.0 0.0
OAT CAS CAR H9 120.2 120.0
OAT CAS CAR H10 239.9 240.1
CAS CAR CAQ H4 298.3 297.0
CAQ CAR CAS H11 120.3 119.9
CAQ CAR CAS H12 239.6 240.0
H9 CAS CAR H10 119.7 120.1
H11 CAR CAS H12 119.3 120.1
CAO CAN OBD CBE 221.6 67.4
CAO CAN CAM H15 179.5 180.1
CAM CAL CAJ H14 180.0 179.9
CAJ CAL CAM H15 181.2 180.0
OBD CAN CAM H15 0.1 0.0
CAN OBD CBE CBJ 47.5 6.1
CAN OBD CBE CBF 228.0 185.8
CAN CAM CAL H14 181.2 180.0
CAL CAM CAN H15 180.0 179.9
CAJ CAL CAM H14 180.0 180.1
CAN CAM CAL H15 180.0 180.1
CBJ CBE OBD CBF 179.5 180.3
OBD CBE CBJ CBI 180.2 180.0
OBD CBE CBJ H18 0.2 359.9
OBD CBE CBF CBG 179.8 179.7
OBD CBE CBF H22 359.8 360.0
OBD CBE CBJ CBF 180.5 179.7
CBJ CBE CBF CBG 0.3 359.4
CBJ CBE CBF H22 180.3 179.7
CBE CBJ CBI CBH 0.1 359.9
CBI CBJ CBE H18 180.0 180.2
CBE CBJ CBI H19 180.1 180.0
OBD CBE CBF CBJ 179.5 180.3
CBF CBE CBJ CBI 359.7 0.3
CBF CBE CBJ H18 179.7 180.2
CBE CBF CBG H21 179.8 180.3
CBI CBJ CBE CBF 359.7 0.3
CBE CBJ CBI H18 180.0 179.8
CBH CBI CBJ H19 180.0 180.0
CBJ CBI CBH H20 180.0 180.0
CBE CBF CBG H22 180.0 180.3
CBF CBG CBH H20 180.0 179.7
CBH CBI CBJ H18 180.1 180.1
CBJ CBI CBH H19 180.0 180.0
CBG CBH CBI H20 180.0 180.0
CBE CBF CBG CBH 359.8 0.6
CBG CBH CBI H19 180.0 180.0
CBI CBH CBG H20 180.0 180.0
C6 NAK H1 H2 120.0 179.7
C6 NAK H2 H1 240.0 180.3
H3 C2 N3 C4 179.7 180.0
CAV CAQ H4 CAR 239.9 240.4
H4 CAQ NAG CAH 184.4 179.9
H4 CAQ CAR CAS 298.3 297.0
H4 CAQ CAR H11 58.6 56.9
H4 CAQ CAR H12 178.0 177.1
H5 CAV CAU OAT 70.0 297.7
CAU CAV H5 H6 119.8 239.8
H5 CAV CAU H7 189.8 57.7
H5 CAV CAU H8 310.2 177.7
H5 CAV CAQ CAR 227.5 62.9
H5 CAV CAQ H4 347.5 182.9
H6 CAV CAU OAT 189.9 177.5
CAU CAV H6 H5 240.2 120.2
H6 CAV CAU H7 309.7 297.5
H6 CAV CAU H8 70.1 57.5
H6 CAV CAQ CAR 107.6 183.1
H6 CAV CAQ H4 227.6 303.0
CAV CAU H7 OAT 241.2 240.0
H7 CAU CAV H5 189.8 57.7
H7 CAU CAV H6 309.7 297.5
CAV CAU H7 H8 120.6 120.0
H7 CAU OAT CAS 313.2 178.9
OAT CAU H7 H8 239.4 240.0
CAV CAU H8 OAT 118.8 120.0
H8 CAU CAV H5 310.2 177.7
H8 CAU CAV H6 70.1 57.5
CAV CAU H8 H7 239.4 240.0
H8 CAU OAT CAS 192.8 58.9
OAT CAU H8 H7 120.6 120.0
OAT CAS H9 CAR 239.1 240.1
OAT CAS H9 H10 119.5 120.0
CAR CAS H9 H10 240.5 239.9
H9 CAS CAR H11 80.0 62.5
H9 CAS CAR H12 320.7 302.4
OAT CAS H10 CAR 120.9 119.9
OAT CAS H10 H9 240.4 240.0
CAR CAS H10 H9 119.5 120.1
H10 CAS CAR H11 320.3 302.4
H10 CAS CAR H12 201.0 182.3
CAQ CAR H11 CAS 238.1 240.3
H11 CAR CAQ H4 58.6 56.9
CAQ CAR H11 H12 119.1 120.2
H11 CAR CAS H9 80.0 62.5
H11 CAR CAS H10 320.3 302.4
CAS CAR H11 H12 241.0 239.9
CAQ CAR H12 CAS 122.0 119.7
H12 CAR CAQ H4 178.0 177.1
CAQ CAR H12 H11 241.0 239.8
H12 CAR CAS H9 320.7 302.4
H12 CAR CAS H10 201.0 182.3
CAS CAR H12 H11 119.0 120.1
NAG CAH H13 CAI 180.0 179.8
H13 CAH CAI CAJ 359.0 360.0
CAJ CAL H14 CAM 180.0 179.9
H14 CAL CAM H15 1.2 359.9
H15 CAM CAL H14 1.2 359.9
H16 CAO CAN OBD 0.2 0.1
H17 CAP CAO H16 358.1 359.6
H18 CBJ CBE CBF 179.7 180.2
CBE CBJ H18 CBI 180.0 180.2
H18 CBJ CBI CBH 180.1 180.1
H18 CBJ CBI H19 0.1 0.1
CBJ CBI H19 CBH 180.0 180.0
H19 CBI CBJ H18 0.1 0.1
H19 CBI CBH H20 0.0 360.0
H20 CBH CBI H19 0.0 360.0
H21 CBG CBH H20 0.0 360.0
CBE CBF H22 CBG 180.0 179.7
H22 CBF CBG H21 359.8 0.0