PDB Chemical Component VRV
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for VRV
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
C6 |
1.410 |
1.395 |
C1 |
C2 |
1.407 |
1.394 |
C1 |
H1 |
1.080 |
1.087 |
C2 |
C3 |
1.416 |
1.395 |
C2 |
H2 |
1.080 |
1.087 |
C3 |
C4 |
1.462 |
1.398 |
C3 |
O22 |
1.373 |
1.363 |
C4 |
C5 |
1.435 |
1.398 |
C4 |
C7 |
1.425 |
1.431 |
C5 |
C6 |
1.400 |
1.395 |
C5 |
H5 |
1.080 |
1.089 |
C6 |
BR23 |
1.911 |
1.890 |
C7 |
C12 |
1.449 |
1.341 |
C7 |
N8 |
1.351 |
1.375 |
N8 |
C9 |
1.320 |
1.382 |
N8 |
HN8 |
1.000 |
1.017 |
C9 |
C10 |
1.435 |
1.507 |
C9 |
O21 |
1.374 |
1.230 |
C10 |
C11 |
1.469 |
1.355 |
C10 |
C19 |
1.441 |
1.428 |
C11 |
C13 |
1.413 |
1.439 |
C11 |
C12 |
1.429 |
1.460 |
C12 |
H12 |
1.080 |
1.087 |
C13 |
C18 |
1.448 |
1.391 |
C13 |
C14 |
1.446 |
1.391 |
C14 |
C15 |
1.420 |
1.395 |
C14 |
H14 |
1.079 |
1.087 |
C15 |
C16 |
1.415 |
1.395 |
C15 |
H15 |
1.080 |
1.086 |
C16 |
C17 |
1.420 |
1.395 |
C16 |
H16 |
1.081 |
1.087 |
C17 |
C18 |
1.416 |
1.395 |
C17 |
H17 |
1.080 |
1.086 |
C18 |
H18 |
1.080 |
1.088 |
C19 |
N20 |
1.158 |
1.161 |
O22 |
HO22 |
0.950 |
0.970 |
Bond Angles for VRV
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
C6 |
120.0 |
120.0 |
C6 |
C1 |
H1 |
120.0 |
120.9 |
C1 |
C6 |
C5 |
120.5 |
119.9 |
C1 |
C6 |
BR23 |
120.8 |
120.0 |
C2 |
C1 |
H1 |
120.0 |
119.0 |
C1 |
C2 |
C3 |
120.0 |
120.0 |
C1 |
C2 |
H2 |
120.0 |
119.6 |
C3 |
C2 |
H2 |
120.0 |
120.3 |
C2 |
C3 |
C4 |
121.5 |
120.2 |
C2 |
C3 |
O22 |
114.9 |
118.8 |
C4 |
C3 |
O22 |
123.6 |
121.0 |
C3 |
C4 |
C5 |
115.6 |
119.5 |
C3 |
C4 |
C7 |
123.6 |
121.2 |
C3 |
O22 |
HO22 |
109.5 |
110.2 |
C5 |
C4 |
C7 |
120.9 |
119.2 |
C4 |
C5 |
C6 |
122.4 |
120.3 |
C4 |
C5 |
H5 |
118.8 |
119.8 |
C4 |
C7 |
C12 |
123.0 |
121.4 |
C4 |
C7 |
N8 |
120.0 |
118.8 |
C6 |
C5 |
H5 |
118.8 |
120.0 |
C5 |
C6 |
BR23 |
118.6 |
120.1 |
N8 |
C7 |
C12 |
117.0 |
119.8 |
C7 |
C12 |
C11 |
121.7 |
121.1 |
C7 |
C12 |
H12 |
119.1 |
121.3 |
C7 |
N8 |
C9 |
125.7 |
124.0 |
C7 |
N8 |
HN8 |
117.2 |
117.9 |
C9 |
N8 |
HN8 |
117.2 |
118.1 |
N8 |
C9 |
C10 |
120.9 |
116.2 |
N8 |
C9 |
O21 |
114.3 |
122.9 |
C10 |
C9 |
O21 |
124.8 |
121.0 |
C9 |
C10 |
C11 |
118.2 |
119.3 |
C9 |
C10 |
C19 |
117.8 |
117.6 |
C11 |
C10 |
C19 |
124.0 |
123.1 |
C10 |
C11 |
C13 |
125.1 |
119.6 |
C10 |
C11 |
C12 |
116.5 |
119.6 |
C10 |
C19 |
N20 |
178.9 |
180.0 |
C12 |
C11 |
C13 |
118.4 |
120.8 |
C11 |
C13 |
C18 |
121.0 |
119.7 |
C11 |
C13 |
C14 |
121.6 |
119.7 |
C11 |
C12 |
H12 |
119.2 |
117.6 |
C14 |
C13 |
C18 |
117.3 |
120.6 |
C13 |
C18 |
C17 |
121.1 |
119.7 |
C13 |
C18 |
H18 |
119.4 |
121.2 |
C13 |
C14 |
C15 |
121.2 |
119.7 |
C13 |
C14 |
H14 |
119.4 |
121.2 |
C15 |
C14 |
H14 |
119.4 |
119.2 |
C14 |
C15 |
C16 |
119.9 |
120.0 |
C14 |
C15 |
H15 |
120.1 |
120.0 |
C16 |
C15 |
H15 |
120.1 |
120.0 |
C15 |
C16 |
C17 |
120.6 |
120.0 |
C15 |
C16 |
H16 |
119.7 |
120.0 |
C17 |
C16 |
H16 |
119.7 |
120.0 |
C16 |
C17 |
C18 |
119.9 |
120.0 |
C16 |
C17 |
H17 |
120.0 |
120.0 |
C18 |
C17 |
H17 |
120.1 |
120.0 |
C17 |
C18 |
H18 |
119.4 |
119.1 |
Torsion Angles for VRV
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
C6 |
H1 |
180.0 |
179.9 |
C6 |
C1 |
C2 |
C3 |
0.1 |
360.0 |
C6 |
C1 |
C2 |
H2 |
180.1 |
180.1 |
C4 |
C5 |
C6 |
C1 |
359.9 |
360.0 |
C1 |
C6 |
C5 |
H5 |
179.9 |
180.0 |
C5 |
C6 |
C1 |
BR23 |
179.5 |
180.0 |
C6 |
C1 |
C2 |
H1 |
180.0 |
180.1 |
C2 |
C1 |
C6 |
C5 |
0.1 |
0.0 |
C2 |
C1 |
C6 |
BR23 |
180.6 |
180.0 |
C3 |
C2 |
C1 |
H2 |
180.0 |
179.9 |
C1 |
C2 |
C3 |
C4 |
359.7 |
0.0 |
C1 |
C2 |
C3 |
O22 |
179.7 |
180.1 |
C2 |
C1 |
H1 |
C6 |
180.0 |
180.1 |
H1 |
C1 |
C6 |
C5 |
180.1 |
180.1 |
H1 |
C1 |
C6 |
BR23 |
0.6 |
0.1 |
H1 |
C1 |
C2 |
C3 |
180.1 |
179.9 |
H1 |
C1 |
C2 |
H2 |
0.1 |
0.0 |
C3 |
C2 |
C1 |
C6 |
0.1 |
360.0 |
C3 |
C2 |
C1 |
H1 |
180.1 |
179.9 |
C1 |
C2 |
C3 |
H2 |
180.0 |
180.1 |
C4 |
C3 |
C2 |
O22 |
180.0 |
180.0 |
C2 |
C3 |
C4 |
C5 |
0.3 |
360.0 |
C2 |
C3 |
C4 |
C7 |
179.9 |
179.9 |
C2 |
C3 |
O22 |
HO22 |
220.6 |
171.4 |
H2 |
C2 |
C1 |
C6 |
180.1 |
180.1 |
H2 |
C2 |
C1 |
H1 |
0.1 |
0.0 |
C1 |
C2 |
H2 |
C3 |
180.0 |
179.9 |
H2 |
C2 |
C3 |
C4 |
179.7 |
179.9 |
H2 |
C2 |
C3 |
O22 |
359.7 |
360.0 |
C4 |
C3 |
C2 |
H2 |
179.7 |
179.9 |
C2 |
C3 |
C4 |
O22 |
180.0 |
180.0 |
C4 |
C3 |
O22 |
HO22 |
40.6 |
351.5 |
C5 |
C4 |
C3 |
C7 |
180.3 |
180.1 |
C3 |
C4 |
C5 |
C6 |
359.9 |
0.0 |
C3 |
C4 |
C5 |
H5 |
179.9 |
180.0 |
C3 |
C4 |
C7 |
C12 |
181.8 |
270.1 |
C3 |
C4 |
C7 |
N8 |
1.7 |
90.4 |
O22 |
C3 |
C2 |
H2 |
359.7 |
360.0 |
C2 |
C3 |
O22 |
C4 |
180.0 |
180.0 |
O22 |
C3 |
C4 |
C5 |
180.2 |
179.9 |
O22 |
C3 |
C4 |
C7 |
359.9 |
359.9 |
C1 |
C6 |
C5 |
C4 |
359.9 |
360.0 |
C5 |
C4 |
C3 |
O22 |
180.2 |
179.9 |
C3 |
C4 |
C5 |
C7 |
179.7 |
179.9 |
C5 |
C4 |
C7 |
C12 |
1.5 |
90.0 |
C5 |
C4 |
C7 |
N8 |
181.4 |
270.4 |
C6 |
C5 |
C4 |
H5 |
180.0 |
180.0 |
C4 |
C5 |
C6 |
BR23 |
179.4 |
180.0 |
C7 |
C4 |
C3 |
O22 |
359.9 |
359.9 |
C3 |
C4 |
C7 |
C5 |
180.3 |
180.1 |
C7 |
C4 |
C5 |
C6 |
180.2 |
180.1 |
C7 |
C4 |
C5 |
H5 |
0.2 |
0.0 |
N8 |
C7 |
C4 |
C12 |
179.9 |
180.4 |
C4 |
C7 |
C12 |
C11 |
179.9 |
180.2 |
C4 |
C7 |
C12 |
H12 |
359.9 |
0.2 |
C4 |
C7 |
N8 |
C9 |
180.1 |
179.8 |
C4 |
C7 |
N8 |
HN8 |
0.1 |
359.8 |
C5 |
C6 |
C1 |
H1 |
180.1 |
180.1 |
C1 |
C6 |
C5 |
BR23 |
180.5 |
180.0 |
C6 |
C5 |
C4 |
C7 |
180.2 |
180.1 |
C4 |
C5 |
C6 |
H5 |
180.0 |
180.0 |
H5 |
C5 |
C4 |
C7 |
0.2 |
0.0 |
C4 |
C5 |
H5 |
C6 |
180.0 |
180.0 |
H5 |
C5 |
C6 |
BR23 |
359.5 |
0.0 |
BR23 |
C6 |
C1 |
H1 |
0.6 |
0.1 |
C1 |
C6 |
BR23 |
C5 |
179.5 |
180.0 |
BR23 |
C6 |
C5 |
H5 |
359.5 |
0.0 |
C4 |
C7 |
C12 |
N8 |
179.9 |
180.4 |
C12 |
C7 |
N8 |
C9 |
360.0 |
0.2 |
C12 |
C7 |
N8 |
HN8 |
180.0 |
180.1 |
C10 |
C11 |
C12 |
C7 |
0.1 |
0.2 |
C7 |
C12 |
C11 |
C13 |
180.1 |
180.2 |
C11 |
C12 |
C7 |
H12 |
180.0 |
179.9 |
C4 |
C7 |
N8 |
C12 |
180.1 |
179.6 |
N8 |
C7 |
C12 |
C11 |
360.0 |
359.8 |
N8 |
C7 |
C12 |
H12 |
180.0 |
179.9 |
C9 |
N8 |
C7 |
HN8 |
180.0 |
180.0 |
C7 |
N8 |
C9 |
C10 |
359.9 |
360.0 |
C7 |
N8 |
C9 |
O21 |
180.0 |
179.9 |
C9 |
N8 |
C7 |
C12 |
360.0 |
0.2 |
C7 |
N8 |
C9 |
HN8 |
180.0 |
180.0 |
C10 |
C9 |
N8 |
O21 |
179.9 |
180.1 |
N8 |
C9 |
C10 |
C11 |
0.2 |
360.0 |
N8 |
C9 |
C10 |
C19 |
180.0 |
179.9 |
HN8 |
N8 |
C7 |
C12 |
180.0 |
180.1 |
C7 |
N8 |
HN8 |
C9 |
180.0 |
180.0 |
HN8 |
N8 |
C9 |
C10 |
179.9 |
180.0 |
HN8 |
N8 |
C9 |
O21 |
0.0 |
359.9 |
C10 |
C9 |
N8 |
HN8 |
179.9 |
180.0 |
N8 |
C9 |
C10 |
O21 |
180.1 |
179.9 |
C11 |
C10 |
C9 |
C19 |
180.1 |
180.0 |
C9 |
C10 |
C11 |
C13 |
179.8 |
179.9 |
C9 |
C10 |
C11 |
C12 |
359.8 |
359.9 |
C9 |
C10 |
C19 |
N20 |
158.1 |
182.5 |
O21 |
C9 |
N8 |
HN8 |
0.0 |
359.9 |
N8 |
C9 |
O21 |
C10 |
179.9 |
180.1 |
O21 |
C9 |
C10 |
C11 |
180.1 |
180.1 |
O21 |
C9 |
C10 |
C19 |
359.9 |
0.0 |
C7 |
C12 |
C11 |
C10 |
0.1 |
0.2 |
C11 |
C10 |
C9 |
O21 |
180.1 |
180.1 |
C9 |
C10 |
C11 |
C19 |
179.9 |
180.0 |
C11 |
C10 |
C19 |
N20 |
338.0 |
2.4 |
C12 |
C11 |
C10 |
C13 |
180.0 |
180.0 |
C10 |
C11 |
C13 |
C18 |
261.7 |
90.0 |
C10 |
C11 |
C13 |
C14 |
81.5 |
270.0 |
C10 |
C11 |
C12 |
H12 |
180.1 |
180.1 |
C19 |
C10 |
C9 |
O21 |
359.9 |
0.0 |
C9 |
C10 |
C19 |
C11 |
180.1 |
180.0 |
C19 |
C10 |
C11 |
C13 |
359.9 |
360.0 |
C19 |
C10 |
C11 |
C12 |
180.0 |
180.0 |
C13 |
C11 |
C10 |
C19 |
359.9 |
360.0 |
C10 |
C11 |
C13 |
C12 |
180.0 |
180.0 |
C13 |
C11 |
C12 |
H12 |
0.2 |
0.1 |
C14 |
C13 |
C11 |
C18 |
179.9 |
180.0 |
C11 |
C13 |
C18 |
C17 |
179.8 |
180.0 |
C11 |
C13 |
C18 |
H18 |
359.8 |
0.1 |
C11 |
C13 |
C14 |
C15 |
180.3 |
180.0 |
C11 |
C13 |
C14 |
H14 |
0.3 |
0.1 |
C7 |
C12 |
C11 |
H12 |
180.0 |
180.1 |
C12 |
C11 |
C10 |
C19 |
180.0 |
180.0 |
C10 |
C11 |
C12 |
C13 |
180.0 |
180.0 |
C12 |
C11 |
C13 |
C18 |
81.7 |
270.0 |
C12 |
C11 |
C13 |
C14 |
261.5 |
90.0 |
C7 |
C12 |
H12 |
C11 |
180.0 |
179.9 |
H12 |
C12 |
C11 |
C13 |
0.2 |
0.1 |
C11 |
C13 |
C18 |
C14 |
179.9 |
180.0 |
C18 |
C13 |
C14 |
C15 |
0.2 |
0.0 |
C18 |
C13 |
C14 |
H14 |
180.2 |
180.1 |
C16 |
C17 |
C18 |
C13 |
0.1 |
0.0 |
C13 |
C18 |
C17 |
H17 |
180.1 |
180.1 |
C17 |
C18 |
C13 |
H18 |
180.0 |
179.9 |
C11 |
C13 |
C14 |
C18 |
180.1 |
180.0 |
C14 |
C13 |
C18 |
C17 |
359.9 |
360.0 |
C14 |
C13 |
C18 |
H18 |
179.9 |
180.0 |
C15 |
C14 |
C13 |
H14 |
180.0 |
179.9 |
C13 |
C14 |
C15 |
C16 |
359.8 |
360.0 |
C13 |
C14 |
C15 |
H15 |
179.8 |
180.1 |
C15 |
C14 |
C13 |
C18 |
0.2 |
0.0 |
C13 |
C14 |
C15 |
H14 |
180.0 |
180.1 |
C16 |
C15 |
C14 |
H15 |
180.0 |
179.9 |
C14 |
C15 |
C16 |
C17 |
0.1 |
0.0 |
C14 |
C15 |
C16 |
H16 |
180.1 |
180.0 |
H14 |
C14 |
C13 |
C18 |
180.2 |
180.1 |
C13 |
C14 |
H14 |
C15 |
180.0 |
179.9 |
H14 |
C14 |
C15 |
C16 |
179.8 |
179.9 |
H14 |
C14 |
C15 |
H15 |
359.8 |
360.0 |
C16 |
C15 |
C14 |
H14 |
179.8 |
179.9 |
C14 |
C15 |
C16 |
H15 |
180.0 |
180.1 |
C17 |
C16 |
C15 |
H16 |
180.0 |
180.0 |
C15 |
C16 |
C17 |
C18 |
359.9 |
360.0 |
C15 |
C16 |
C17 |
H17 |
179.9 |
179.9 |
H15 |
C15 |
C14 |
H14 |
359.8 |
360.0 |
C14 |
C15 |
H15 |
C16 |
180.0 |
179.9 |
H15 |
C15 |
C16 |
C17 |
180.2 |
179.9 |
H15 |
C15 |
C16 |
H16 |
0.1 |
359.9 |
C13 |
C18 |
C17 |
C16 |
0.1 |
0.0 |
C17 |
C16 |
C15 |
H15 |
180.2 |
179.9 |
C15 |
C16 |
C17 |
H16 |
180.0 |
180.0 |
C18 |
C17 |
C16 |
H17 |
180.0 |
180.0 |
C16 |
C17 |
C18 |
H18 |
180.0 |
180.0 |
H16 |
C16 |
C15 |
H15 |
0.1 |
359.9 |
C15 |
C16 |
H16 |
C17 |
180.0 |
180.0 |
H16 |
C16 |
C17 |
C18 |
179.9 |
180.0 |
H16 |
C16 |
C17 |
H17 |
359.9 |
359.9 |
C13 |
C18 |
C17 |
H18 |
180.0 |
180.1 |
C18 |
C17 |
C16 |
H16 |
179.9 |
180.0 |
C16 |
C17 |
C18 |
H17 |
180.0 |
180.0 |
H17 |
C17 |
C16 |
H16 |
359.9 |
359.9 |
C16 |
C17 |
H17 |
C18 |
180.0 |
180.0 |
H17 |
C17 |
C18 |
H18 |
0.1 |
0.0 |
C13 |
C18 |
H18 |
C17 |
180.0 |
179.9 |
H18 |
C18 |
C17 |
H17 |
0.1 |
0.0 |