PDB Chemical Component VRB

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for VRB

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C01 H1 1.100 1.090
C01 H2 1.100 1.091
C01 H3 1.100 1.090
C02 C03 1.513 1.507
C02 C01 1.532 1.530
C02 H4 1.100 1.090
C02 H5 1.100 1.090
C03 C04 1.329 1.329
C04 C05 1.510 1.507
C05 H6 1.099 1.091
C05 H7 1.100 1.091
C05 H8 1.100 1.090
C06 C04 1.464 1.467
C06 O07 1.219 1.216
N08 C06 1.351 1.346
N08 H9 1.000 0.969
C09 N08 1.474 1.469
C09 C03 1.512 1.511
C09 H10 1.100 1.090
C10 C09 1.532 1.531
C10 H11 1.100 1.089
C10 H12 1.100 1.090
C11 N38 1.373 1.363
C11 C10 1.513 1.507
C12 C11 1.373 1.348
C13 C12 1.509 1.508
C13 H13 1.100 1.090
C13 H14 1.100 1.090
C13 H15 1.100 1.090
C14 C12 1.399 1.409
C14 C15 1.400 1.348
C15 N38 1.375 1.363
C16 C15 1.562 1.506
C16 H16 1.100 1.090
C16 H17 1.100 1.090
C17 N26 1.336 1.357
C17 C16 1.573 1.507
C18 C17 1.420 1.356
C19 C18 1.506 1.507
C19 C20 1.527 1.530
C19 H18 1.100 1.090
C19 H19 1.100 1.090
C20 H20 1.100 1.090
C20 H21 1.100 1.090
C21 C20 1.507 1.507
O22 C21 1.341 1.343
O22 H22 0.950 0.966
O23 C21 1.211 1.208
C24 C18 1.363 1.396
C24 C25 1.422 1.387
C25 C27 1.466 1.411
C25 N26 1.330 1.378
N26 H23 1.000 0.970
C28 C33 1.411 1.409
C28 C27 1.380 1.380
N29 C28 1.397 1.393
C30 N29 1.350 1.347
C30 C32 1.408 1.406
O31 C30 1.220 1.220
C32 C33 1.354 1.362
C33 C34 1.501 1.507
C34 H26 1.100 1.091
C34 H27 1.100 1.089
C34 H28 1.100 1.090
C35 C32 1.502 1.507
C35 H29 1.100 1.090
C35 H30 1.100 1.090
C36 C35 1.519 1.530
C36 H31 1.100 1.090
C36 H32 1.100 1.090
C36 H33 1.101 1.089
C37 C24 1.505 1.507
C37 H34 1.100 1.090
C37 H35 1.100 1.090
C37 H36 1.100 1.091
N38 H37 1.000 0.970
C39 C40 1.530 1.530
C39 C14 1.514 1.507
C39 H38 1.100 1.091
C39 H39 1.100 1.090
C40 C41 1.503 1.507
C40 H40 1.100 1.091
C40 H41 1.100 1.091
C41 O42 1.208 1.342
O42 H42 0.950 0.967
O43 C41 1.339 1.208
C27 H24 1.080 1.080
N29 H421 1.000 0.970

Bond Angles for VRB

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
H1 C01 H2 109.4 109.4
H1 C01 H3 109.5 109.5
C02 C01 H1 109.5 109.5
H2 C01 H3 109.4 109.5
C02 C01 H2 109.5 109.5
C02 C01 H3 109.5 109.5
C03 C02 H4 108.8 109.5
C03 C02 H5 108.8 109.5
C02 C03 C04 123.1 126.5
H4 C02 H5 109.5 109.5
C03 C04 C05 129.2 125.1
C04 C05 H6 109.5 109.5
C04 C05 H7 109.5 109.5
C04 C05 H8 109.5 109.5
H6 C05 H7 109.5 109.4
H6 C05 H8 109.5 109.4
H7 C05 H8 109.4 109.5
C09 N08 H9 126.8 126.3
C10 C09 H10 109.0 110.2
H11 C10 H12 109.5 109.5
C11 C10 H11 107.9 109.5
C11 C10 H12 107.9 109.4
C12 C11 N38 108.0 108.2
C11 N38 C15 109.2 108.7
C11 N38 H37 125.4 125.6
H13 C13 H14 109.5 109.5
H13 C13 H15 109.5 109.5
H14 C13 H15 109.5 109.5
C14 C15 N38 107.5 108.2
C16 C15 N38 124.9 125.9
C15 N38 H37 125.4 125.6
H16 C16 H17 109.5 109.4
C17 C16 H16 109.8 109.5
C17 C16 H17 109.8 109.4
C18 C17 N26 107.6 109.0
C17 N26 C25 110.6 108.6
C17 N26 H23 124.7 125.7
C20 C19 H18 108.9 109.4
C20 C19 H19 109.0 109.5
C19 C20 H20 109.5 109.4
C19 C20 H21 109.5 109.5
H18 C19 H19 109.5 109.5
H20 C20 H21 109.5 109.5
C21 C20 H20 109.5 109.5
C21 C20 H21 109.5 109.5
C24 C25 C27 130.9 126.3
C24 C25 N26 107.9 107.4
N26 C25 C27 121.1 126.3
C25 C27 H24 115.0 120.0
C25 N26 H23 124.7 125.7
N29 C28 C33 107.3 107.6
C28 C33 C32 107.8 107.4
C28 C33 C34 126.5 126.3
C28 C27 H24 115.0 120.0
C30 N29 H421 125.9 125.8
O31 C30 C32 125.5 125.7
C30 C32 C33 108.2 108.1
C32 C33 C34 125.7 126.3
C33 C34 H26 109.5 109.4
C33 C34 H27 109.4 109.5
C33 C34 H28 109.4 109.5
H26 C34 H27 109.5 109.5
H26 C34 H28 109.5 109.5
H27 C34 H28 109.5 109.5
H29 C35 H30 109.5 109.5
C36 C35 H29 110.4 109.4
C36 C35 H30 110.4 109.5
H31 C36 H32 109.5 109.5
H31 C36 H33 109.5 109.5
H32 C36 H33 109.4 109.4
H34 C37 H35 109.4 109.6
H34 C37 H36 109.5 109.4
H35 C37 H36 109.5 109.5
C40 C39 H38 108.9 109.4
C40 C39 H39 108.9 109.5
C39 C40 C41 109.0 109.5
C39 C40 H40 109.6 109.4
C39 C40 H41 109.6 109.4
H38 C39 H39 109.4 109.4
C41 C40 H40 109.6 109.5
C41 C40 H41 109.6 109.5
C40 C41 O42 120.2 120.0
H40 C40 H41 109.4 109.4
C41 O42 H42 109.5 117.0

Torsion Angles for VRB

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
H2 C01 H1 H3 120.0 119.9
C02 C01 H1 H2 120.0 120.0
C02 C01 H1 H3 240.0 239.9
H1 C01 H2 H3 240.0 240.0
C02 C01 H2 H1 240.0 240.0
C02 C01 H2 H3 120.0 120.1
H1 C01 H3 H2 120.0 119.9
C02 C01 H3 H1 120.0 120.0
C02 C01 H3 H2 240.0 240.0
C03 C02 C01 H1 180.0 60.1
C03 C02 C01 H2 300.0 180.0
C03 C02 C01 H3 60.0 300.0
H4 C02 C03 H5 240.7 120.0
C02 C03 C04 C05 359.8 359.9
H1 C01 C02 H2 240.0 240.1
H1 C01 C02 H3 120.0 120.1
H2 C01 C02 H3 240.0 240.0
H4 C02 C01 H1 59.7 180.0
H4 C02 C01 H2 179.7 299.9
H4 C02 C01 H3 299.7 60.0
C03 C02 H4 H5 118.9 240.0
H4 C02 C03 C04 193.6 335.1
H5 C02 C01 H1 300.4 300.0
H5 C02 C01 H2 60.3 59.9
H5 C02 C01 H3 180.3 180.0
C03 C02 H5 H4 241.1 120.0
H5 C02 C03 C04 312.9 215.0
C04 C03 C02 H4 193.6 335.1
C04 C03 C02 H5 312.9 215.0
C03 C04 C05 H6 180.0 90.0
C03 C04 C05 H7 300.0 210.0
C03 C04 C05 H8 60.0 330.0
H6 C05 C04 H7 240.0 240.0
H6 C05 C04 H8 120.0 120.0
H7 C05 C04 H8 240.0 240.0
C04 C05 H6 H7 120.0 120.0
C04 C05 H6 H8 240.0 240.0
H7 C05 H6 H8 120.0 119.9
C04 C05 H7 H6 240.0 240.0
C04 C05 H7 H8 120.0 120.1
H6 C05 H7 H8 240.0 240.1
C04 C05 H8 H6 120.0 120.0
C04 C05 H8 H7 240.0 239.9
H6 C05 H8 H7 120.0 119.9
C06 C04 C05 H6 358.8 270.0
C06 C04 C05 H7 118.8 29.9
C06 C04 C05 H8 238.7 150.0
C09 C03 C02 H4 13.9 154.7
C09 C03 C02 H5 133.2 34.7
H10 C09 N08 H9 64.0 60.6
C10 C09 N08 H9 301.6 298.8
H11 C10 C09 H10 41.8 64.6
C11 C10 H11 H12 242.9 240.0
H12 C10 C09 H10 159.9 184.7
C11 C10 H12 H11 117.1 120.0
N38 C11 C10 H11 104.7 145.0
N38 C11 C10 H12 346.5 24.9
C14 C15 N38 C11 0.5 0.0
C16 C15 N38 C11 180.1 180.0
C15 N38 C11 H37 180.0 180.3
C11 C10 C09 H10 280.9 304.6
H11 C10 C11 H12 118.1 120.0
C12 C11 C10 H11 286.2 325.3
C12 C11 C10 H12 168.1 205.3
C12 C11 N38 C15 359.1 360.0
C12 C11 N38 H37 179.1 179.7
C13 C12 C11 N38 180.2 180.0
H14 C13 H13 H15 120.0 120.1
H13 C13 H14 H15 240.0 239.9
H13 C13 H15 H14 120.0 120.1
C14 C12 C11 N38 0.9 0.0
C11 N38 C15 C14 0.5 0.0
C16 C15 C14 N38 180.4 180.1
C14 C15 N38 H37 180.5 180.3
C11 N38 C15 H37 180.0 179.7
C11 N38 C15 C16 180.1 180.0
C14 C15 C16 N38 179.5 179.9
C16 C15 N38 H37 0.1 0.3
H16 C16 C15 N38 50.6 25.1
C17 C16 H16 H17 239.4 240.1
H17 C16 C15 N38 171.1 145.0
C17 C16 H17 H16 120.6 120.0
N26 C17 C16 H16 294.7 144.9
N26 C17 C16 H17 174.3 25.0
C24 C25 N26 C17 359.4 0.0
C17 N26 C25 C27 181.2 180.0
C25 N26 C17 H23 180.0 180.3
C17 C16 C15 N38 290.8 265.0
H16 C16 C17 H17 120.4 119.9
C18 C17 C16 H16 114.1 325.2
C18 C17 C16 H17 353.7 205.3
C18 C17 N26 C25 0.5 0.0
C18 C17 N26 H23 180.5 179.7
C19 C18 C17 N26 180.7 180.0
H18 C19 C20 H19 119.4 120.0
H20 C20 C19 H21 239.9 240.0
C21 C20 C19 H20 240.0 240.0
C21 C20 C19 H21 120.0 120.0
C20 C19 H18 H19 241.0 240.0
H18 C19 C20 H20 183.9 180.0
H18 C19 C20 H21 304.0 300.0
C20 C19 H19 H18 119.0 120.0
H19 C19 C20 H20 64.6 60.0
H19 C19 C20 H21 184.6 180.0
H20 C20 C19 H18 183.9 180.0
H20 C20 C19 H19 64.6 60.0
C19 C20 H20 H21 120.1 120.0
C21 C20 H20 H21 239.9 240.0
H21 C20 C19 H18 304.0 300.0
H21 C20 C19 H19 184.6 180.0
C19 C20 H21 H20 239.9 240.0
C21 C20 H21 H20 120.1 120.0
C21 C20 C19 H18 64.0 60.0
C21 C20 C19 H19 304.6 300.0
C19 C20 C21 H20 120.0 120.0
C19 C20 C21 H21 240.1 239.9
H20 C20 C21 H21 120.1 120.0
O22 C21 C20 H20 13.1 60.0
O22 C21 C20 H21 253.0 300.0
O23 C21 C20 H20 192.9 240.0
O23 C21 C20 H21 72.8 120.0
C24 C18 C17 N26 359.9 360.0
C17 N26 C25 C24 359.4 0.0
N26 C25 C24 C27 182.0 180.0
C24 C25 C27 H24 199.3 342.7
C24 C25 N26 H23 179.4 180.3
C24 C25 C27 N26 182.2 180.0
C27 C25 N26 H23 1.2 0.3
C28 C27 C25 H24 180.0 180.0
C17 N26 C25 H23 180.0 179.7
C24 C25 N26 C27 178.2 180.0
N26 C25 C27 H24 17.1 162.7
C17 N26 H23 C25 180.0 180.4
H23 N26 C25 C27 1.2 0.3
C33 C28 C27 H24 25.1 352.6
C30 C32 C33 C28 0.8 360.0
C32 C33 C28 C34 179.5 180.3
C28 C33 C34 H26 180.0 0.0
C28 C33 C34 H27 300.0 120.0
C28 C33 C34 H28 60.0 240.1
C25 C27 C28 H24 180.0 180.0
N29 C28 C33 C32 359.2 0.0
N29 C28 C33 C34 179.7 179.7
N29 C28 C27 H24 206.7 173.0
C30 N29 C28 C33 0.5 0.0
C28 C33 C32 C30 0.8 360.0
C32 C30 N29 H421 179.9 180.0
C30 C32 C33 C34 180.3 180.2
O31 C30 N29 H421 359.7 0.1
O31 C30 C32 C33 179.8 180.0
C28 C33 C32 C34 180.5 179.7
C32 C33 C34 H26 0.6 179.7
C32 C33 C34 H27 120.6 299.7
C32 C33 C34 H28 240.6 59.7
C28 C33 C34 C32 179.4 180.3
H26 C34 C33 H27 240.0 240.0
H26 C34 C33 H28 120.0 120.0
H27 C34 C33 H28 240.0 240.0
C33 C34 H26 H27 120.0 120.0
C33 C34 H26 H28 240.0 240.0
H27 C34 H26 H28 120.0 120.0
C33 C34 H27 H26 240.0 240.0
C33 C34 H27 H28 119.9 120.0
H26 C34 H27 H28 240.0 240.0
C33 C34 H28 H26 120.0 120.0
C33 C34 H28 H27 240.1 240.0
H26 C34 H28 H27 120.0 120.1
C36 C35 H29 H30 238.2 240.0
C36 C35 H30 H29 121.7 120.0
H29 C35 C36 H30 121.2 120.0
H31 C36 C35 H29 60.6 180.0
H31 C36 C35 H30 299.4 60.0
H32 C36 H31 H33 120.0 120.0
H32 C36 C35 H29 180.6 300.0
H32 C36 C35 H30 59.4 180.0
H31 C36 H32 H33 240.0 240.0
H33 C36 C35 H29 300.6 60.0
H33 C36 C35 H30 179.4 300.0
H31 C36 H33 H32 120.0 120.0
H35 C37 H34 H36 120.0 120.0
H34 C37 H35 H36 240.0 240.0
H34 C37 H36 H35 120.0 120.1
C11 N38 H37 C15 180.0 180.3
H38 C39 C40 H39 240.7 119.9
C41 C40 C39 H40 240.1 240.0
C41 C40 C39 H41 120.0 120.0
C39 C40 C41 O42 108.5 180.0
H40 C40 C39 H41 239.9 240.1
C40 C39 H38 H39 119.0 240.1
H38 C39 C40 C41 36.8 60.0
H38 C39 C40 H40 156.8 180.0
H38 C39 C40 H41 276.9 299.9
C40 C39 H39 H38 241.0 119.9
H39 C39 C40 C41 156.1 300.0
H39 C39 C40 H40 276.1 60.1
H39 C39 C40 H41 36.2 180.0
C41 C40 C39 H38 36.8 60.0
C41 C40 C39 H39 156.1 300.0
C39 C40 C41 H40 119.9 120.0
C39 C40 C41 H41 240.1 240.0
H40 C40 C41 H41 120.2 120.0
C40 C41 O42 H42 180.3 180.0
H40 C40 C39 H38 156.8 180.0
H40 C40 C39 H39 276.1 60.1
C39 C40 H40 C41 240.5 240.0
C39 C40 H40 H41 120.2 119.9
C41 C40 H40 H41 239.7 240.0
H40 C40 C41 O42 348.6 60.0
H41 C40 C39 H38 276.9 299.9
H41 C40 C39 H39 36.2 180.0
C39 C40 H41 C41 119.5 120.1
C39 C40 H41 H40 239.8 240.1
C41 C40 H41 H40 120.3 120.0
H41 C40 C41 O42 228.5 300.0
O42 C41 C40 H40 348.6 60.0
O42 C41 C40 H41 228.5 300.0
O43 C41 C40 H40 168.9 240.0
O43 C41 C40 H41 48.8 120.0
O43 C41 O42 H42 0.0 0.1
H421 N29 C28 C33 180.5 179.9