PDB Chemical Component VRA
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for VRA
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C6 |
1.437 |
1.382 |
| C1 |
F15 |
1.365 |
1.352 |
| C2 |
C1 |
1.472 |
1.391 |
| C3 |
C2 |
1.503 |
1.388 |
| C3 |
C4 |
1.370 |
1.381 |
| C3 |
H3 |
1.080 |
1.079 |
| C4 |
C5 |
1.471 |
1.383 |
| C4 |
H4 |
1.080 |
1.081 |
| C5 |
I14 |
2.153 |
2.095 |
| C5 |
C6 |
1.459 |
1.385 |
| C6 |
H6 |
1.080 |
1.080 |
| N7 |
C2 |
1.458 |
1.398 |
| N7 |
HN7 |
0.999 |
0.970 |
| C8 |
N7 |
1.459 |
1.402 |
| C8 |
C13 |
1.461 |
1.390 |
| C9 |
C8 |
1.457 |
1.392 |
| C10 |
C9 |
1.447 |
1.391 |
| C10 |
C11 |
1.454 |
1.385 |
| C11 |
C12 |
1.447 |
1.385 |
| C11 |
H11 |
1.080 |
1.080 |
| C12 |
F17 |
1.370 |
1.351 |
| C12 |
C13 |
1.421 |
1.385 |
| C13 |
F16 |
1.384 |
1.350 |
| N18 |
C9 |
1.442 |
1.404 |
| N18 |
S19 |
1.622 |
1.655 |
| N18 |
HN18 |
1.000 |
0.971 |
| S19 |
O21 |
1.567 |
1.421 |
| O20 |
S19 |
1.588 |
1.421 |
| C22 |
S19 |
1.822 |
1.814 |
| C22 |
C23 |
1.518 |
1.530 |
| C22 |
C24 |
1.510 |
1.530 |
| C23 |
C24 |
1.508 |
1.530 |
| C23 |
H23 |
1.101 |
1.090 |
| C23 |
H23A |
1.100 |
1.089 |
| C24 |
H24 |
1.099 |
1.090 |
| C24 |
H24A |
1.100 |
1.090 |
| C25 |
C22 |
1.571 |
1.530 |
| C25 |
H25 |
1.100 |
1.090 |
| C25 |
H25A |
1.100 |
1.090 |
| C26 |
C25 |
1.571 |
1.530 |
| C26 |
O29 |
1.444 |
1.429 |
| C26 |
H26 |
1.100 |
1.091 |
| C27 |
C26 |
1.553 |
1.529 |
| C27 |
H27 |
1.100 |
1.090 |
| C27 |
H27A |
1.100 |
1.090 |
| O28 |
C27 |
1.446 |
1.429 |
| O28 |
HO28 |
0.950 |
0.967 |
| O29 |
HO29 |
0.950 |
0.967 |
| O30 |
C10 |
1.439 |
1.361 |
| C31 |
O30 |
1.441 |
1.429 |
| C31 |
H31 |
1.100 |
1.090 |
| C31 |
H31A |
1.100 |
1.090 |
| C31 |
H31B |
1.100 |
1.089 |
Bond Angles for VRA
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
C1 |
F15 |
120.5 |
120.0 |
| C2 |
C1 |
C6 |
118.5 |
119.9 |
| C1 |
C6 |
C5 |
120.1 |
120.0 |
| C1 |
C6 |
H6 |
120.0 |
120.0 |
| C2 |
C1 |
F15 |
121.0 |
120.1 |
| C4 |
C3 |
H3 |
118.9 |
120.1 |
| C3 |
C4 |
C5 |
118.3 |
120.2 |
| C3 |
C4 |
H4 |
120.9 |
119.9 |
| C5 |
C4 |
H4 |
120.8 |
119.9 |
| C4 |
C5 |
I14 |
118.9 |
119.9 |
| C4 |
C5 |
C6 |
121.8 |
120.1 |
| C6 |
C5 |
I14 |
119.4 |
119.9 |
| C5 |
C6 |
H6 |
120.0 |
119.9 |
| C8 |
N7 |
HN7 |
117.5 |
120.0 |
| C9 |
C8 |
C13 |
119.7 |
119.9 |
| C8 |
C13 |
C12 |
120.3 |
120.0 |
| C8 |
C13 |
F16 |
121.5 |
120.0 |
| C10 |
C11 |
C12 |
119.9 |
120.1 |
| C10 |
C11 |
H11 |
120.1 |
119.9 |
| C12 |
C11 |
H11 |
120.1 |
119.9 |
| C11 |
C12 |
F17 |
120.0 |
119.9 |
| C11 |
C12 |
C13 |
120.5 |
120.2 |
| C13 |
C12 |
F17 |
119.5 |
119.9 |
| C12 |
C13 |
F16 |
118.2 |
120.0 |
| S19 |
N18 |
HN18 |
104.6 |
120.0 |
| N18 |
S19 |
O21 |
110.3 |
104.3 |
| O20 |
S19 |
O21 |
109.0 |
121.0 |
| C23 |
C22 |
C24 |
59.7 |
60.0 |
| C22 |
C23 |
C24 |
59.9 |
60.0 |
| C22 |
C23 |
H23 |
131.0 |
117.4 |
| C22 |
C23 |
H23A |
136.0 |
117.5 |
| C22 |
C24 |
C23 |
60.4 |
60.0 |
| C22 |
C24 |
H24 |
130.7 |
117.5 |
| C22 |
C24 |
H24A |
135.8 |
117.5 |
| C24 |
C23 |
H23 |
131.0 |
117.5 |
| C24 |
C23 |
H23A |
136.0 |
117.5 |
| C23 |
C24 |
H24 |
130.6 |
117.5 |
| C23 |
C24 |
H24A |
135.8 |
117.5 |
| H23 |
C23 |
H23A |
74.7 |
115.6 |
| H24 |
C24 |
H24A |
75.1 |
115.5 |
| H25 |
C25 |
H25A |
111.3 |
109.5 |
| C26 |
C25 |
H25 |
108.7 |
109.5 |
| C26 |
C25 |
H25A |
108.2 |
109.5 |
| O29 |
C26 |
H26 |
109.7 |
109.5 |
| C27 |
C26 |
O29 |
108.9 |
109.5 |
| C26 |
O29 |
HO29 |
109.5 |
114.0 |
| C27 |
C26 |
H26 |
109.5 |
109.5 |
| H27 |
C27 |
H27A |
109.9 |
109.5 |
| O28 |
C27 |
H27 |
109.3 |
109.5 |
| O28 |
C27 |
H27A |
109.2 |
109.5 |
| H31 |
C31 |
H31A |
109.5 |
109.4 |
| H31 |
C31 |
H31B |
109.4 |
109.5 |
| H31A |
C31 |
H31B |
109.5 |
109.5 |
Torsion Angles for VRA
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
C6 |
F15 |
180.6 |
179.7 |
| C4 |
C5 |
C6 |
C1 |
358.6 |
359.9 |
| C1 |
C6 |
C5 |
I14 |
179.0 |
180.0 |
| C5 |
C6 |
C1 |
H6 |
180.0 |
180.3 |
| C2 |
C1 |
F15 |
C6 |
179.4 |
180.3 |
| F15 |
C1 |
C6 |
C5 |
180.7 |
180.3 |
| F15 |
C1 |
C6 |
H6 |
0.7 |
360.0 |
| C6 |
C1 |
C2 |
F15 |
179.4 |
180.3 |
| C2 |
C1 |
C6 |
C5 |
1.3 |
0.0 |
| C2 |
C1 |
C6 |
H6 |
181.3 |
179.7 |
| C3 |
C2 |
C1 |
C6 |
358.8 |
360.0 |
| C3 |
C2 |
C1 |
F15 |
179.4 |
179.7 |
| C5 |
C4 |
C3 |
H4 |
180.0 |
180.0 |
| C3 |
C4 |
C5 |
I14 |
180.9 |
180.0 |
| C3 |
C4 |
C5 |
C6 |
1.3 |
0.0 |
| H3 |
C3 |
C4 |
C5 |
178.9 |
179.9 |
| H3 |
C3 |
C4 |
H4 |
358.8 |
359.9 |
| C1 |
C6 |
C5 |
C4 |
358.6 |
359.9 |
| C5 |
C4 |
C3 |
H3 |
178.9 |
179.9 |
| C3 |
C4 |
C5 |
H4 |
180.0 |
180.0 |
| C6 |
C5 |
C4 |
I14 |
180.4 |
180.1 |
| C4 |
C5 |
C6 |
H6 |
178.6 |
180.3 |
| H4 |
C4 |
C3 |
H3 |
358.8 |
359.9 |
| C3 |
C4 |
H4 |
C5 |
180.0 |
180.0 |
| H4 |
C4 |
C5 |
I14 |
0.9 |
360.0 |
| H4 |
C4 |
C5 |
C6 |
181.3 |
180.1 |
| I14 |
C5 |
C4 |
H4 |
0.9 |
360.0 |
| C4 |
C5 |
I14 |
C6 |
180.4 |
180.1 |
| I14 |
C5 |
C6 |
H6 |
359.0 |
0.3 |
| C5 |
C6 |
C1 |
F15 |
180.7 |
180.3 |
| C1 |
C6 |
C5 |
H6 |
180.0 |
179.7 |
| C6 |
C5 |
C4 |
H4 |
181.3 |
180.1 |
| C4 |
C5 |
C6 |
I14 |
179.6 |
179.9 |
| H6 |
C6 |
C1 |
F15 |
0.7 |
360.0 |
| C1 |
C6 |
H6 |
C5 |
180.0 |
180.3 |
| H6 |
C6 |
C5 |
I14 |
359.0 |
0.3 |
| N7 |
C2 |
C1 |
F15 |
0.9 |
359.7 |
| C13 |
C8 |
N7 |
HN7 |
230.1 |
199.1 |
| C11 |
C12 |
C13 |
C8 |
359.8 |
0.5 |
| C8 |
C13 |
C12 |
F17 |
179.6 |
180.3 |
| C12 |
C13 |
C8 |
F16 |
180.1 |
179.7 |
| C9 |
C8 |
N7 |
HN7 |
50.2 |
19.3 |
| C9 |
C8 |
C13 |
C12 |
359.9 |
359.5 |
| C9 |
C8 |
C13 |
F16 |
179.8 |
179.7 |
| C10 |
C9 |
C8 |
C13 |
0.6 |
0.2 |
| C12 |
C11 |
C10 |
H11 |
180.0 |
180.1 |
| C10 |
C11 |
C12 |
F17 |
180.3 |
180.0 |
| C10 |
C11 |
C12 |
C13 |
0.1 |
359.7 |
| C8 |
C13 |
C12 |
C11 |
359.8 |
0.5 |
| C10 |
C11 |
C12 |
H11 |
180.0 |
179.9 |
| C13 |
C12 |
C11 |
F17 |
179.8 |
179.7 |
| C11 |
C12 |
C13 |
F16 |
179.8 |
180.3 |
| C10 |
C11 |
H11 |
C12 |
180.0 |
180.1 |
| H11 |
C11 |
C12 |
F17 |
0.3 |
0.1 |
| H11 |
C11 |
C12 |
C13 |
180.1 |
179.8 |
| F17 |
C12 |
C11 |
H11 |
0.3 |
0.1 |
| C11 |
C12 |
F17 |
C13 |
179.8 |
179.7 |
| F17 |
C12 |
C13 |
F16 |
359.6 |
0.0 |
| C8 |
C13 |
C12 |
F16 |
179.9 |
180.3 |
| C13 |
C12 |
C11 |
H11 |
180.1 |
179.8 |
| C11 |
C12 |
C13 |
F17 |
180.2 |
180.3 |
| C8 |
C13 |
F16 |
C12 |
180.1 |
179.7 |
| F16 |
C13 |
C12 |
F17 |
359.6 |
0.0 |
| O20 |
S19 |
N18 |
O21 |
119.2 |
232.2 |
| HN18 |
N18 |
S19 |
O21 |
287.9 |
135.5 |
| O21 |
S19 |
N18 |
HN18 |
287.9 |
135.5 |
| O20 |
S19 |
N18 |
HN18 |
47.1 |
7.6 |
| N18 |
S19 |
O20 |
O21 |
240.0 |
116.8 |
| C22 |
S19 |
N18 |
HN18 |
167.1 |
251.5 |
| C23 |
C22 |
C24 |
C23 |
-0.0 |
-0.0 |
| C23 |
C22 |
C24 |
H24 |
120.0 |
107.5 |
| C23 |
C22 |
C24 |
H24A |
233.3 |
252.5 |
| C24 |
C23 |
C22 |
H23 |
240.0 |
252.5 |
| C24 |
C23 |
C22 |
H23A |
126.7 |
107.5 |
| C22 |
C23 |
C24 |
H24 |
240.0 |
252.5 |
| C22 |
C23 |
C24 |
H24A |
126.8 |
107.5 |
| H23 |
C23 |
C22 |
H23A |
246.7 |
215.0 |
| C24 |
C22 |
C23 |
C24 |
-0.0 |
-0.0 |
| C24 |
C22 |
C23 |
H23 |
120.0 |
107.5 |
| C24 |
C22 |
C23 |
H23A |
233.3 |
252.5 |
| C22 |
C24 |
C23 |
H23 |
240.0 |
252.6 |
| C22 |
C24 |
C23 |
H23A |
126.7 |
107.5 |
| C23 |
C24 |
C22 |
H24 |
240.0 |
252.5 |
| C23 |
C24 |
C22 |
H24A |
126.7 |
107.5 |
| H24 |
C24 |
C22 |
H24A |
246.7 |
215.1 |
| C24 |
C23 |
C22 |
C24 |
-0.0 |
360.0 |
| C22 |
C23 |
C24 |
H23 |
120.0 |
107.4 |
| C22 |
C23 |
C24 |
H23A |
233.3 |
252.5 |
| C22 |
C24 |
C23 |
H24 |
120.0 |
107.5 |
| C22 |
C24 |
C23 |
H24A |
233.2 |
252.5 |
| H23 |
C23 |
C24 |
H23A |
113.3 |
145.1 |
| H24 |
C24 |
C23 |
H24A |
113.2 |
145.0 |
| H23 |
C23 |
C22 |
C24 |
120.0 |
107.5 |
| C22 |
C23 |
H23 |
C24 |
277.3 |
291.4 |
| C22 |
C23 |
H23 |
H23A |
138.6 |
145.7 |
| C24 |
C23 |
H23 |
H23A |
221.4 |
214.2 |
| H23 |
C23 |
C24 |
H24 |
120.0 |
145.1 |
| H23 |
C23 |
C24 |
H24A |
6.8 |
0.0 |
| H23A |
C23 |
C22 |
C24 |
233.3 |
252.5 |
| C22 |
C23 |
H23A |
C24 |
91.9 |
68.6 |
| C22 |
C23 |
H23A |
H23 |
226.0 |
214.4 |
| C24 |
C23 |
H23A |
H23 |
134.0 |
145.7 |
| H23A |
C23 |
C24 |
H24 |
6.7 |
360.0 |
| H23A |
C23 |
C24 |
H24A |
253.4 |
214.9 |
| C22 |
C24 |
H24 |
C23 |
276.9 |
291.3 |
| C22 |
C24 |
H24 |
H24A |
138.5 |
145.6 |
| H24 |
C24 |
C23 |
H23 |
120.0 |
145.1 |
| H24 |
C24 |
C23 |
H23A |
6.7 |
360.0 |
| C23 |
C24 |
H24 |
H24A |
221.6 |
214.3 |
| C22 |
C24 |
H24A |
C23 |
92.3 |
68.6 |
| C22 |
C24 |
H24A |
H24 |
226.2 |
214.4 |
| H24A |
C24 |
C23 |
H23 |
6.8 |
0.0 |
| H24A |
C24 |
C23 |
H23A |
253.4 |
214.9 |
| C23 |
C24 |
H24A |
H24 |
133.8 |
145.7 |
| C25 |
C22 |
C23 |
H23 |
12.1 |
359.9 |
| C25 |
C22 |
C23 |
H23A |
125.4 |
144.9 |
| C25 |
C22 |
C24 |
H24 |
226.4 |
215.0 |
| C25 |
C22 |
C24 |
H24A |
339.7 |
360.0 |
| C26 |
C25 |
H25 |
H25A |
241.0 |
240.0 |
| C26 |
C25 |
H25A |
H25 |
119.3 |
120.0 |
| H25 |
C25 |
C26 |
H25A |
121.0 |
120.0 |
| O29 |
C26 |
C25 |
H25 |
179.6 |
187.4 |
| O29 |
C26 |
C25 |
H25A |
58.6 |
67.4 |
| C27 |
C26 |
O29 |
H26 |
240.2 |
240.0 |
| H26 |
C26 |
C25 |
H25 |
299.6 |
307.5 |
| H26 |
C26 |
C25 |
H25A |
178.5 |
187.4 |
| C27 |
C26 |
H26 |
O29 |
119.5 |
120.0 |
| H26 |
C26 |
O29 |
HO29 |
264.1 |
180.0 |
| C27 |
C26 |
C25 |
H25 |
59.4 |
67.4 |
| C27 |
C26 |
C25 |
H25A |
298.3 |
307.4 |
| O29 |
C26 |
C27 |
H26 |
120.0 |
120.0 |
| C27 |
C26 |
O29 |
HO29 |
144.3 |
60.0 |
| H27 |
C27 |
C26 |
O29 |
218.6 |
185.0 |
| H27 |
C27 |
C26 |
H26 |
98.6 |
65.0 |
| O28 |
C27 |
H27 |
H27A |
240.2 |
240.0 |
| H27A |
C27 |
C26 |
O29 |
338.8 |
305.0 |
| H27A |
C27 |
C26 |
H26 |
218.8 |
185.0 |
| O28 |
C27 |
H27A |
H27 |
119.8 |
120.0 |
| O28 |
C27 |
C26 |
O29 |
98.6 |
65.0 |
| O28 |
C27 |
C26 |
H26 |
338.6 |
305.0 |
| H27 |
C27 |
O28 |
H27A |
120.2 |
120.0 |
| HO28 |
O28 |
C27 |
H27 |
61.7 |
60.0 |
| HO28 |
O28 |
C27 |
H27A |
301.5 |
300.0 |
| HO29 |
O29 |
C26 |
H26 |
264.1 |
180.0 |
| O30 |
C10 |
C11 |
H11 |
0.0 |
359.9 |
| H31A |
C31 |
H31 |
H31B |
120.0 |
120.0 |
| H31 |
C31 |
H31A |
H31B |
240.0 |
240.0 |
| H31 |
C31 |
H31B |
H31A |
120.0 |
120.0 |