PDB Chemical Component VR

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for VR

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C4	C3	1.532	1.530
C3	C5	1.472	1.530
C3	C2	1.517	1.529
C2	O2	1.373	1.429
O2	P1	1.563	1.610
P1	C1	1.837	1.824
P1	O1	1.479	1.480
P1	O3	1.673	1.609
C4	H41C	1.100	1.090
C4	H42C	1.100	1.090
C4	H43C	1.100	1.090
C3	H3	1.101	1.090
C5	H51C	1.100	1.090
C5	H52C	1.100	1.090
C5	H53C	1.100	1.090
C2	H21C	1.100	1.090
C2	H22C	1.100	1.091
C1	H11C	1.100	1.090
C1	H12C	1.100	1.090
C1	H13C	1.100	1.090
O3	H30	0.949	0.968

Bond Angles for VR

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C4	C3	C5	110.5	109.5
C4	C3	C2	108.4	109.5
C3	C4	H41C	109.5	109.5
C3	C4	H42C	109.4	109.5
C3	C4	H43C	109.5	109.4
C4	C3	H3	108.1	109.5
C5	C3	C2	104.8	109.5
C5	C3	H3	111.5	109.4
C3	C5	H51C	109.5	109.5
C3	C5	H52C	109.5	109.5
C3	C5	H53C	109.4	109.5
C3	C2	O2	103.3	109.5
C2	C3	H3	113.5	109.5
C3	C2	H21C	111.6	109.5
C3	C2	H22C	112.9	109.5
C2	O2	P1	119.3	123.0
O2	C2	H21C	111.6	109.5
O2	C2	H22C	112.9	109.5
O2	P1	C1	104.1	109.5
O2	P1	O1	126.1	109.5
O2	P1	O3	100.9	109.5
C1	P1	O1	106.9	109.4
C1	P1	O3	101.3	109.4
P1	C1	H11C	109.5	109.5
P1	C1	H12C	109.4	109.5
P1	C1	H13C	109.5	109.4
O1	P1	O3	114.6	109.5
P1	O3	H30	109.5	114.0
H41C	C4	H42C	109.5	109.5
H41C	C4	H43C	109.5	109.4
H42C	C4	H43C	109.5	109.5
H51C	C5	H52C	109.5	109.5
H51C	C5	H53C	109.5	109.4
H52C	C5	H53C	109.5	109.4
H21C	C2	H22C	104.8	109.4
H11C	C1	H12C	109.5	109.5
H11C	C1	H13C	109.4	109.5
H12C	C1	H13C	109.5	109.5

Torsion Angles for VR

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C5	C3	C4	C2	114.2	240.0
C5	C3	C4	H3	237.7	119.9
C4	C3	C5	H51C	234.2	180.0
C4	C3	C5	H52C	354.3	300.0
C4	C3	C5	H53C	114.2	60.0
C4	C3	C2	O2	281.2	175.0
C2	C3	C4	H3	123.5	240.0
C4	C3	C2	H21C	41.2	295.0
C4	C3	C2	H22C	159.0	54.9
H41C	C4	C3	H42C	240.0	240.0
H41C	C4	C3	H43C	120.0	119.9
H42C	C4	C3	H43C	240.0	240.0
C4	C3	C5	C2	243.5	120.0
C5	C3	C4	H41C	37.6	59.9
C5	C3	C4	H42C	157.6	179.9
C5	C3	C4	H43C	277.5	300.0
C4	C3	C5	H3	120.3	240.0
C5	C3	C2	O2	163.3	295.0
C2	C3	C5	H3	236.8	120.0
C5	C3	C2	H21C	283.3	55.1
C5	C3	C2	H22C	41.0	175.0
H51C	C5	C3	H52C	240.0	240.0
H51C	C5	C3	H53C	120.0	120.0
H52C	C5	C3	H53C	240.0	240.0
C4	C3	C2	C5	118.0	240.0
C2	C3	C4	H41C	283.3	180.0
C2	C3	C4	H42C	43.3	300.0
C2	C3	C4	H43C	163.3	60.0
C4	C3	C2	H3	239.9	120.0
C5	C3	C2	H3	121.9	240.0
C2	C3	C5	H51C	350.7	60.0
C2	C3	C5	H52C	110.8	180.0
C2	C3	C5	H53C	230.7	300.0
C3	C2	O2	P1	222.2	180.0
O2	C2	C3	H21C	240.0	240.0
O2	C2	C3	H22C	122.3	120.0
H21C	C2	C3	H22C	242.2	240.1
O2	C2	C3	H3	41.4	55.0
C3	C2	O2	H21C	120.0	120.0
C3	C2	O2	H22C	237.7	240.0
C2	O2	P1	C1	114.7	175.0
C2	O2	P1	O1	351.1	55.0
C2	O2	P1	O3	219.4	295.0
H21C	C2	O2	H22C	117.8	119.9
P1	O2	C2	H21C	102.2	60.0
P1	O2	C2	H22C	344.5	300.0
C1	P1	O2	O1	123.6	120.0
C1	P1	O2	O3	255.3	240.0
O2	P1	C1	H11C	45.8	60.0
O2	P1	C1	H12C	165.9	180.0
O2	P1	C1	H13C	285.9	300.0
O1	P1	O2	O3	131.7	120.0
O2	P1	O3	H30	321.7	300.0
O2	P1	C1	O1	224.6	240.0
O2	P1	C1	O3	104.4	120.0
O1	P1	C1	O3	239.7	240.0
C1	P1	O3	H30	68.6	60.0
H11C	C1	P1	H12C	240.0	239.9
H11C	C1	P1	H13C	120.0	120.0
H12C	C1	P1	H13C	240.0	240.0
O2	P1	O1	C1	122.4	120.0
O2	P1	O1	O3	233.8	239.9
C1	P1	O1	O3	111.3	119.9
O1	P1	C1	H11C	181.2	180.0
O1	P1	C1	H12C	301.2	300.1
O1	P1	C1	H13C	61.2	60.0
O1	P1	O3	H30	183.3	180.0
O2	P1	O3	C1	253.1	240.0
O2	P1	O3	O1	138.5	120.1
C1	P1	O3	O1	245.3	240.1
O3	P1	C1	H11C	301.5	300.0
O3	P1	C1	H12C	61.5	60.0
O3	P1	C1	H13C	181.5	180.0
H41C	C4	C3	C5	37.6	59.9
H41C	C4	C3	C2	283.3	180.0
C3	C4	H41C	H42C	120.0	120.0
C3	C4	H41C	H43C	240.0	240.1
H41C	C4	C3	H3	159.9	300.0
H42C	C4	H41C	H43C	120.0	120.0
H42C	C4	C3	C5	157.6	179.9
H42C	C4	C3	C2	43.3	300.0
C3	C4	H42C	H41C	240.0	240.0
C3	C4	H42C	H43C	120.0	120.0
H42C	C4	C3	H3	279.9	60.0
H41C	C4	H42C	H43C	240.0	240.0
H43C	C4	C3	C5	277.5	300.0
H43C	C4	C3	C2	163.3	60.0
C3	C4	H43C	H41C	120.0	120.0
C3	C4	H43C	H42C	240.0	239.9
H43C	C4	C3	H3	39.8	180.0
H41C	C4	H43C	H42C	120.0	120.0
C4	C3	H3	C5	238.3	120.0
C4	C3	H3	C2	120.3	240.0
H3	C3	C4	H41C	159.9	300.0
H3	C3	C4	H42C	279.9	60.0
H3	C3	C4	H43C	39.8	180.0
C5	C3	H3	C2	241.9	120.0
H3	C3	C5	H51C	113.9	300.0
H3	C3	C5	H52C	234.0	60.0
H3	C3	C5	H53C	354.0	180.0
H3	C3	C2	O2	41.4	55.0
H3	C3	C2	H21C	161.4	175.0
H3	C3	C2	H22C	279.1	294.9
H51C	C5	C3	C2	350.7	60.0
H51C	C5	C3	H3	113.9	300.0
C3	C5	H51C	H52C	120.0	120.1
C3	C5	H51C	H53C	240.0	240.0
H52C	C5	H51C	H53C	120.0	119.9
H52C	C5	C3	C2	110.8	180.0
H52C	C5	C3	H3	234.0	60.0
C3	C5	H52C	H51C	240.0	239.9
C3	C5	H52C	H53C	120.0	120.0
H51C	C5	H52C	H53C	240.0	240.1
H53C	C5	C3	C2	230.7	300.0
H53C	C5	C3	H3	354.0	180.0
C3	C5	H53C	H51C	120.0	120.0
C3	C5	H53C	H52C	240.0	239.9
H51C	C5	H53C	H52C	120.0	119.9
C3	C2	H21C	O2	245.1	239.9
H21C	C2	C3	H3	161.4	175.0
C3	C2	H21C	H22C	122.5	120.0
H21C	C2	O2	P1	102.2	60.0
O2	C2	H21C	H22C	237.5	240.0
C3	C2	H22C	O2	116.7	120.1
H22C	C2	C3	H3	279.1	294.9
C3	C2	H22C	H21C	238.3	240.0
H22C	C2	O2	P1	344.5	300.0
O2	C2	H22C	H21C	121.7	120.0
H11C	C1	P1	O1	181.2	180.0
H11C	C1	P1	O3	301.5	300.0
P1	C1	H11C	H12C	120.0	120.0
P1	C1	H11C	H13C	240.0	240.1
H12C	C1	H11C	H13C	120.0	120.0
H12C	C1	P1	O1	301.2	300.1
H12C	C1	P1	O3	61.5	60.0
P1	C1	H12C	H11C	240.0	240.0
P1	C1	H12C	H13C	120.0	119.9
H11C	C1	H12C	H13C	240.0	239.9
H13C	C1	P1	O1	61.2	60.0
H13C	C1	P1	O3	181.5	180.0
P1	C1	H13C	H11C	120.0	120.0
P1	C1	H13C	H12C	240.0	240.0
H11C	C1	H13C	H12C	120.0	120.1