PDB Chemical Component VPX

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for VPX

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
CAH CAI 1.390 1.383
CAH CAJ 1.391 1.381
CAI CAZ 1.389 1.385
CAJ CBC 1.389 1.393
CAZ FAE 1.337 1.351
CAZ CAN 1.387 1.382
CBC CAN 1.388 1.394
CBC CBB 1.389 1.484
CAL CBB 1.391 1.399
CAL CAK 1.393 1.381
CBB CAM 1.385 1.394
CAK CBA 1.392 1.396
CAM NAT 1.393 1.315
CAA CAO 1.527 1.530
CBA NAT 1.338 1.329
CBA CAF 1.391 1.476
CAP CAQ 1.517 1.529
CAP CBE 1.514 1.530
OAV CAO 1.425 1.452
OAV CAX 1.355 1.346
CAQ CBI 1.520 1.530
CAX OAC 1.228 1.215
CAX NAU 1.336 1.348
CAG CAF 1.527 1.327
CAG CBF 1.535 1.508
NAU CBE 1.466 1.466
CBE CAR 1.514 1.528
CBI CBF 1.518 1.530
CBI CBG 1.510 1.534
CAB CBD 1.528 1.530
CBF CBJ 1.544 1.503
CAR CBG 1.516 1.530
CBD CBJ 1.516 1.541
CBD OAW 1.446 1.464
CBG CAS 1.508 1.528
CBJ CBH 1.513 1.541
CAS CBH 1.515 1.528
OAW CAY 1.365 1.344
CBH CAY 1.383 1.530
CAY OAD 1.229 1.208
CAA H1 1.100 1.090
CAA H2 1.100 1.091
CAA H3 1.100 1.090
CAO H4 1.100 1.091
CAO H5 1.100 1.090
NAU H6 1.000 0.970
CBE H7 1.100 1.090
CAR H8 1.100 1.090
CAR H9 1.100 1.090
CAP H10 1.100 1.090
CAP H11 1.100 1.090
CAQ H12 1.100 1.091
CAQ H13 1.100 1.090
CBI H14 1.100 1.090
CBG H15 1.100 1.091
CAS H16 1.100 1.090
CAS H17 1.100 1.089
CBH H18 1.100 1.090
CBD H19 1.099 1.090
CAB H20 1.100 1.090
CAB H21 1.100 1.090
CAB H22 1.100 1.090
CBJ H23 1.100 1.090
CBF H24 1.100 1.090
CAG H25 1.080 1.079
CAF H27 1.080 1.080
CAK H29 1.080 1.080
CAL H30 1.080 1.081
CAM H31 1.080 1.081
CAN H32 1.080 1.081
CAI H33 1.080 1.080
CAH H34 1.080 1.080
CAJ H35 1.080 1.080

Bond Angles for VPX

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CAH CAI H33 120.1 119.8
CAJ CAH H34 119.9 120.0
CAH CAJ H35 120.1 120.0
CAZ CAN H32 119.8 120.1
CBC CAN H32 119.8 120.1
CAL CBB CAM 119.5 119.2
CBB CAL H30 120.3 120.8
CAL CAK H29 120.0 120.4
CBB CAM H31 120.1 119.6
CAK CBA NAT 120.2 120.8
CAO CAA H1 109.5 109.5
CAO CAA H2 109.5 109.4
CAO CAA H3 109.5 109.5
CAA CAO H4 109.5 109.4
CAA CAO H5 109.5 109.4
CBA CAF H27 123.7 120.0
CAP CAQ CBI 110.2 109.9
CAQ CAP H10 109.4 109.5
CAQ CAP H11 109.4 109.5
CAP CAQ H12 109.3 109.4
CAP CAQ H13 109.3 109.4
CAP CBE H7 109.5 109.6
OAV CAO H4 109.5 109.5
OAV CAO H5 109.5 109.5
OAV CAX OAC 120.0 120.0
OAV CAX NAU 119.8 120.0
CAQ CBI CBF 108.6 108.9
CAQ CBI CBG 109.4 109.5
CBI CAQ H12 109.3 109.4
CBI CAQ H13 109.3 109.5
CAQ CBI H14 110.0 110.0
OAC CAX NAU 120.2 120.0
CAX NAU CBE 122.5 120.0
CAX NAU H6 118.8 120.0
CAF CAG H25 126.1 120.0
CAG CAF H27 123.7 120.0
CAG CBF H24 108.0 108.8
NAU CBE CAR 108.9 109.5
CBE NAU H6 118.7 120.0
NAU CBE H7 110.2 109.5
CBE CAR CBG 109.9 109.8
CAR CBE H7 109.5 109.6
CBE CAR H8 109.4 109.4
CBE CAR H9 109.4 109.4
CBG CBI CBF 108.7 107.9
CBI CBF CBJ 112.2 112.4
CBF CBI H14 110.0 110.0
CBI CBF H24 108.2 108.9
CAR CBG CBI 110.0 109.5
CBI CBG CAS 108.7 108.2
CBG CBI H14 110.1 110.5
CBI CBG H15 109.8 109.7
CAB CBD CBJ 109.9 110.7
CAB CBD H19 111.0 110.7
CBF CBJ H23 109.8 108.9
CAR CBG CAS 108.8 109.0
CBG CAR H8 109.4 109.4
CBG CAR H9 109.4 109.4
CAR CBG H15 109.7 109.8
CBJ CBD H19 111.2 110.7
CBD CBJ H23 110.2 109.5
CBG CAS CBH 110.7 111.5
CAS CBG H15 109.9 110.6
CBG CAS H16 109.1 109.0
CBG CAS H17 109.1 109.0
CBJ CBH H18 111.9 112.9
CAS CBH CAY 107.5 106.1
CBH CAS H16 109.2 109.1
CBH CAS H17 109.2 109.2
CAS CBH H18 111.8 112.3
CBH CAY OAD 121.2 125.4
CAY CBH H18 114.0 112.6
H1 CAA H2 109.5 109.5
H1 CAA H3 109.5 109.5
H2 CAA H3 109.4 109.5
H4 CAO H5 109.5 109.4
H8 CAR H9 109.5 109.3
H10 CAP H11 109.5 109.6
H12 CAQ H13 109.5 109.3
H16 CAS H17 109.5 109.0
H20 CAB H21 109.4 109.4
H20 CAB H22 109.5 109.5
H21 CAB H22 109.5 109.5

Torsion Angles for VPX

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
CAJ CAH CAI H33 180.0 179.7
CAI CAZ CAN H32 180.0 180.0
CAJ CBC CAN H32 179.8 180.2
FAE CAZ CAN H32 0.1 0.1
CBC CAN CAZ H32 180.0 180.0
CAZ CAN CBC H32 180.0 180.0
CBC CBB CAL H30 0.1 0.0
CBC CBB CAM H31 359.9 0.3
CBB CAL CAK H29 179.9 180.0
CAL CBB CAM H31 179.9 180.0
CAL CAK CBA NAT 0.0 360.0
CAM CBB CAL H30 180.1 180.3
CAK CBA CAF H27 177.1 0.3
CAL CBB CAM NAT 359.9 359.5
OAV CAO CAA H4 240.0 240.0
OAV CAO CAA H5 120.0 120.1
H1 CAA CAO H2 240.0 240.0
H1 CAA CAO H3 120.0 120.0
H2 CAA CAO H3 240.1 240.0
H4 CAO CAA H5 240.0 240.1
NAT CBA CAF H27 357.1 180.0
CBA CAF CAG H25 356.4 360.0
CAG CAF CBA H27 180.0 180.0
CAQ CAP CBE H7 60.3 59.6
CAP CAQ CBI CBF 182.8 182.7
CAP CAQ CBI CBG 301.3 300.5
CBI CAQ CAP H12 239.9 239.9
CBI CAQ CAP H13 120.1 120.2
CAP CAQ CBI H14 62.4 62.1
H10 CAP CAQ H11 240.1 120.2
H12 CAQ CAP H13 240.2 240.3
CAP CBE NAU H6 84.8 94.7
NAU CBE CAP H7 121.0 120.1
CAP CBE CAR CBG 59.9 60.4
CAR CBE CAP H7 240.1 240.0
CAP CBE CAR H8 180.0 180.5
CAP CBE CAR H9 299.9 300.3
OAV CAO CAA H1 180.0 180.0
OAV CAO CAA H2 300.0 300.0
OAV CAO CAA H3 60.0 60.0
CAA CAO OAV H4 120.0 120.0
CAA CAO OAV H5 240.1 240.0
H4 CAO OAV H5 120.1 120.0
CAX OAV CAO H4 60.3 60.0
CAX OAV CAO H5 300.2 300.1
OAC CAX OAV NAU 179.8 180.0
OAV CAX NAU CBE 180.1 180.0
OAV CAX NAU H6 0.0 0.0
CBI CAQ CAP H10 179.4 300.4
CBI CAQ CAP H11 299.4 180.3
CAP CAQ CBI H12 120.1 120.1
CAP CAQ CBI H13 239.9 239.9
CBG CBI CAQ CBF 118.5 117.7
CAQ CBI CBF CBJ 175.4 177.2
CBF CBI CAQ H14 120.4 120.6
CAQ CBI CBF H24 56.5 56.5
CAR CBG CBI CAQ 58.7 58.9
CAQ CBI CBG CAS 177.7 177.6
CBG CBI CAQ H14 238.9 238.3
CAQ CBI CBG H15 297.9 298.3
H12 CAQ CBI H13 119.8 119.8
OAV CAX OAC NAU 180.2 180.0
OAC CAX NAU CBE 0.3 360.0
OAC CAX NAU H6 180.2 180.0
OAV CAX NAU OAC 179.8 180.0
CAX NAU CBE CAR 145.5 155.0
CBE NAU CAX H6 180.0 180.0
CAX NAU CBE H7 25.3 34.9
CBA CAF CAG H27 180.0 180.0
CAF CAG CBF H24 21.5 8.2
CAG CBF CBI H14 59.0 58.6
CBI CBF CAG H24 118.1 118.6
CAG CBF CBJ H23 64.6 66.4
CAP CBE NAU H7 239.5 239.9
CAX NAU CBE H6 180.0 180.0
NAU CBE CAR CBG 179.4 180.3
CAR CBE NAU H7 120.2 120.1
NAU CBE CAR H8 299.5 300.4
NAU CBE CAR H9 59.3 60.2
CAP CBE CAR H7 119.9 120.0
CAR CBE NAU H6 325.5 335.0
NAU CBE CAR H7 239.4 239.9
CBE CAR CBG CBI 300.1 300.4
CBE CAR CBG CAS 181.2 182.2
CBG CAR CBE H8 239.9 239.9
CBG CAR CBE H9 120.1 120.1
CBE CAR CBG H15 61.0 61.0
H8 CAR CBE H9 240.1 240.2
CAQ CBI CBF CBG 118.9 118.8
CBF CBI CAQ H12 62.7 62.6
CBF CBI CAQ H13 302.9 302.9
CAQ CBI CBF H14 239.6 239.4
CAG CBF CBI H24 242.1 241.5
CAR CBG CBI CBF 177.2 177.2
CBF CBI CBG CAS 296.2 295.9
CBG CBI CBF H14 120.6 120.6
CBF CBI CBG H15 56.3 56.6
CBI CBF CBJ H23 187.9 187.1
CAQ CBI CBG CBF 241.6 241.7
CBG CBI CAQ H12 181.2 180.3
CBG CBI CAQ H13 61.4 60.6
CAQ CBI CBG H14 121.0 121.4
CBG CBI CBF CBJ 56.4 58.5
CBF CBI CBG H14 239.4 239.7
CBG CBI CBF H24 297.5 297.7
CAR CBG CBI CAS 241.0 241.3
CBI CBG CAR H8 180.1 180.3
CBI CBG CAR H9 60.2 60.6
CAR CBG CBI H15 120.9 120.6
CBI CBG CAS CBH 63.7 62.6
CAS CBG CBI H15 239.8 239.3
CBI CBG CAS H16 183.9 183.1
CBI CBG CAS H17 303.5 302.0
CBJ CBD CAB H19 236.5 236.9
CAB CBD CBJ H23 322.5 321.0
CBJ CBF CBI H14 295.8 297.9
CBI CBF CBJ H24 240.9 239.2
CBF CBJ CBD H19 322.3 319.8
CBD CBJ CBF H23 236.7 237.7
CBF CBJ CBH H18 280.6 278.5
CAQ CBI CBG CAR 58.7 58.9
CBG CAR CBE H7 300.0 300.4
CBE CAR CBG H8 120.1 120.1
CBE CAR CBG H9 239.9 239.9
CBI CBG CAR CAS 118.9 118.2
CAR CBG CBI H14 297.8 297.5
CBI CBG CAR H15 239.1 239.5
CAR CBG CAS CBH 183.5 181.6
CAS CBG CAR H15 120.2 121.2
CAR CBG CAS H16 303.7 302.1
CAR CBG CAS H17 63.3 61.0
H8 CAR CBG H9 119.9 119.7
CBI CBF CBJ CBD 64.6 64.9
CAB CBD CBJ H19 123.4 123.2
CBF CBJ CBD H23 123.1 121.9
CBD CBJ CBH H18 160.3 156.4
CAS CBG CBI CBF 296.2 295.9
CAR CBG CAS CBI 119.7 119.0
CAS CBG CBI H14 56.7 56.2
CBI CBG CAS H15 120.1 120.2
CAS CBG CAR H8 61.2 62.1
CAS CBG CAR H9 301.3 302.3
CAR CBG CAS H15 239.9 239.2
CBG CAS CBH CAY 197.2 198.9
CBH CAS CBG H16 239.8 239.5
CBH CAS CBG H17 120.2 120.6
CBG CAS CBH H18 71.4 75.4
H16 CAS CBG H17 240.4 241.1
CBI CBF CBJ CBH 311.5 310.1
CBJ CBH CAS H16 184.8 187.4
CBJ CBH CAS H17 65.2 68.4
CAS CBH CBJ H18 126.4 127.2
CAY CBH CBJ H18 239.4 239.5
CBH CAS CBG H15 303.6 302.4
CBG CAS CBH H16 120.2 120.5
CBG CAS CBH H17 239.8 239.5
CBJ CBH CAS H18 233.6 232.4
CAS CBH CAY OAD 266.5 271.4
CAY CBH CAS H18 125.8 123.4
H16 CAS CBH H17 119.6 119.0
OAW CAY CBH H18 210.9 214.7
CBJ CBH CAY H18 119.0 120.8
CAY CBH CAS H16 77.0 78.4
CAY CBH CAS H17 317.4 319.4
CAS CBH CAY H18 235.5 236.8
OAD CAY CBH H18 31.0 34.6
CAO CAA H1 H2 120.0 120.0
CAO CAA H1 H3 240.0 240.0
H1 CAA CAO H4 300.0 300.0
H1 CAA CAO H5 60.0 59.9
H2 CAA H1 H3 120.0 120.0
CAO CAA H2 H1 240.0 240.0
CAO CAA H2 H3 120.0 120.0
H2 CAA CAO H4 60.0 60.1
H2 CAA CAO H5 180.1 179.9
H1 CAA H2 H3 240.0 240.0
CAO CAA H3 H1 120.0 120.1
CAO CAA H3 H2 240.0 240.1
H3 CAA CAO H4 180.0 180.0
H3 CAA CAO H5 300.0 299.9
H1 CAA H3 H2 120.0 120.0
H4 CAO CAA H1 300.0 300.0
H4 CAO CAA H2 60.0 60.1
H4 CAO CAA H3 180.0 180.0
CAA CAO H4 H5 120.0 119.9
OAV CAO H4 H5 239.9 240.0
H5 CAO CAA H1 60.0 59.9
H5 CAO CAA H2 180.1 179.9
H5 CAO CAA H3 300.0 299.9
CAA CAO H5 H4 239.9 240.1
OAV CAO H5 H4 120.1 120.0
CAX NAU H6 CBE 180.0 180.0
H6 NAU CBE CAR 325.5 335.0
H6 NAU CBE H7 205.4 214.8
NAU CBE H7 CAR 119.8 120.1
H7 CBE NAU H6 205.4 214.8
H7 CBE CAR CBG 300.0 300.4
H7 CBE CAR H8 60.1 60.5
H7 CBE CAR H9 179.9 180.3
CBE CAR H8 CBG 239.6 239.6
H8 CAR CBE H7 60.1 60.5
CBE CAR H8 H9 119.8 119.8
H8 CAR CBG CBI 180.1 180.3
H8 CAR CBG CAS 61.2 62.1
CBG CAR H8 H9 240.2 240.2
H8 CAR CBG H15 301.0 300.8
CBE CAR H9 CBG 120.4 120.4
H9 CAR CBE H7 179.9 180.3
CBE CAR H9 H8 240.2 240.2
H9 CAR CBG CBI 60.2 60.6
H9 CAR CBG CAS 301.3 302.3
CBG CAR H9 H8 119.8 119.8
H9 CAR CBG H15 181.1 181.1
H10 CAP CAQ CBI 179.4 300.4
CAQ CAP H10 H11 119.9 239.9
H10 CAP CAQ H12 299.6 60.6
H10 CAP CAQ H13 59.3 180.3
H10 CAP CBE H7 300.2 179.4
H11 CAP CAQ CBI 299.4 180.3
CAQ CAP H11 H10 240.1 120.1
H11 CAP CAQ H12 59.5 300.4
H11 CAP CAQ H13 179.3 60.1
H11 CAP CBE H7 180.3 299.7
CAP CAQ H12 CBI 239.4 239.6
H12 CAQ CAP H10 299.6 60.6
H12 CAQ CAP H11 59.5 300.4
CAP CAQ H12 H13 119.7 119.7
H12 CAQ CBI CBF 62.7 62.6
H12 CAQ CBI CBG 181.2 180.3
CBI CAQ H12 H13 240.3 240.2
H12 CAQ CBI H14 302.2 302.0
CAP CAQ H13 CBI 120.6 120.4
H13 CAQ CAP H10 59.3 180.3
H13 CAQ CAP H11 179.3 60.1
CAP CAQ H13 H12 240.3 240.2
H13 CAQ CBI CBF 302.9 302.9
H13 CAQ CBI CBG 61.4 60.6
CBI CAQ H13 H12 119.7 119.8
H13 CAQ CBI H14 182.5 182.2
CAQ CBI H14 CBF 119.6 119.9
CAQ CBI H14 CBG 239.4 238.9
H14 CBI CAQ H12 302.2 302.0
H14 CBI CAQ H13 182.5 182.2
CBG CBI H14 CBF 240.2 241.0
H14 CBI CBF CBJ 295.8 297.9
H14 CBI CBF H24 176.9 177.1
H14 CBI CBG CAS 56.7 56.2
H14 CBI CBG H15 176.9 176.9
H15 CBG CBI CBF 56.3 56.6
CAR CBG H15 CBI 239.0 239.6
CBI CBG H15 CAS 240.6 240.7
H15 CBG CBI H14 176.9 176.9
CAR CBG H15 CAS 119.5 120.3
H15 CBG CAR H8 301.0 300.8
H15 CBG CAR H9 181.1 181.1
H15 CBG CAS CBH 303.6 302.4
H15 CBG CAS H16 63.8 62.9
H15 CBG CAS H17 183.4 181.8
CBG CAS H16 CBH 238.8 238.0
H16 CAS CBG H15 63.8 62.9
CBG CAS H16 H17 119.4 118.9
H16 CAS CBH CAY 77.0 78.4
CBH CAS H16 H17 240.6 240.9
H16 CAS CBH H18 311.2 314.9
CBG CAS H17 CBH 121.2 122.0
H17 CAS CBG H15 183.4 181.8
CBG CAS H17 H16 240.6 241.1
H17 CAS CBH CAY 317.4 319.4
CBH CAS H17 H16 119.4 119.1
H17 CAS CBH H18 191.5 196.0
CAS CBH H18 CAY 122.2 119.7
H18 CBH CAS H16 311.2 314.9
H18 CBH CAS H17 191.5 196.0
H18 CBH CAY OAD 31.0 34.6
CAB CBD H19 CBJ 237.3 236.9
H19 CBD CBJ H23 199.2 197.8
H20 CAB CBD CBJ 180.0 52.9
H20 CAB CBD H19 303.5 176.1
H21 CAB H20 H22 120.0 120.0
H21 CAB CBD CBJ 300.0 172.9
H21 CAB CBD H19 63.5 296.0
H20 CAB H21 H22 240.0 240.0
H22 CAB CBD CBJ 60.0 292.9
H22 CAB CBD H19 183.5 56.1
H20 CAB H22 H21 120.0 120.0
H23 CBJ CBD H19 199.2 197.8
H23 CBJ CBH H18 44.0 41.1
CBI CBF H24 CBJ 121.6 122.9
H24 CBF CBI H14 176.9 177.1
H24 CBF CBJ H23 307.0 307.9
H25 CAG CAF H27 176.4 180.0
H25 CAG CBF H24 201.5 188.2
H27 CAF CAG H25 176.4 180.0
H29 CAK CBA NAT 180.0 180.0
H30 CAL CBB CAM 180.1 180.3
H30 CAL CAK H29 360.0 0.0
H34 CAH CAI H33 360.0 359.9
H34 CAH CAJ H35 359.9 359.8
H35 CAJ CAH H34 359.9 359.8