PDB Chemical Component VOR

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for VOR

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
F1	C16	1.318	1.352
F2	C18	1.319	1.351
F3	C22	1.317	1.351
O4	C10	1.429	1.429
N5	N7	1.354	1.404
N5	C12	1.438	1.465
N5	C21	1.393	1.344
N6	C15	1.390	1.323
N6	C24	1.421	1.318
N7	C25	1.404	1.307
N8	C21	1.401	1.309
N8	C25	1.396	1.332
N9	C23	1.411	1.323
N9	C24	1.392	1.318
C10	C11	1.562	1.530
C10	C12	1.489	1.530
C10	C13	1.523	1.507
C11	C14	1.466	1.530
C11	C15	1.485	1.507
C13	C16	1.410	1.384
C13	C17	1.454	1.383
C15	C18	1.443	1.388
C16	C19	1.472	1.385
C17	C20	1.444	1.382
C18	C23	1.444	1.388
C19	C22	1.431	1.385
C20	C22	1.420	1.385
O4	HO4	0.950	0.967
C11	H11	1.100	1.090
C12	H12	1.100	1.091
C12	H12A	1.100	1.090
C14	H14	1.100	1.090
C14	H14A	1.100	1.090
C14	H14B	1.100	1.090
C17	H17	1.080	1.079
C19	H19	1.080	1.080
C20	H20	1.080	1.080
C21	H21	1.081	1.080
C23	H23	1.080	1.081
C24	H24	1.080	1.080
C25	H25	1.080	1.081

Bond Angles for VOR

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
F1	C16	C13	129.4	120.1
F1	C16	C19	109.9	119.9
F2	C18	C15	122.6	120.8
F2	C18	C23	119.2	120.9
F3	C22	C19	121.7	120.0
F3	C22	C20	118.1	120.0
O4	C10	C11	104.9	109.5
O4	C10	C12	112.7	109.5
O4	C10	C13	103.9	109.5
C10	O4	HO4	109.5	114.0
N7	N5	C12	124.7	126.9
N7	N5	C21	108.3	106.4
N5	N7	C25	109.1	106.8
C12	N5	C21	127.0	126.8
N5	C12	C10	121.6	109.4
N5	C12	H12	106.4	109.4
N5	C12	H12A	106.4	109.5
N5	C21	N8	108.2	108.1
N5	C21	H21	125.9	126.0
C15	N6	C24	121.0	120.8
N6	C15	C11	123.2	120.4
N6	C15	C18	119.9	119.1
N6	C24	N9	120.2	121.8
N6	C24	H24	119.9	119.1
N7	C25	N8	107.3	109.0
N7	C25	H25	126.3	125.5
C21	N8	C25	107.0	109.8
N8	C21	H21	125.9	125.9
N8	C25	H25	126.3	125.5
C23	N9	C24	120.4	120.9
N9	C23	C18	120.2	119.1
N9	C23	H23	119.9	120.5
N9	C24	H24	119.9	119.1
C11	C10	C12	114.2	109.5
C11	C10	C13	110.6	109.4
C10	C11	C14	118.7	109.5
C10	C11	C15	107.1	109.5
C10	C11	H11	102.6	109.5
C12	C10	C13	110.1	109.5
C10	C12	H12	106.3	109.5
C10	C12	H12A	106.4	109.5
C10	C13	C16	127.3	120.0
C10	C13	C17	114.2	120.0
C14	C11	C15	119.2	109.5
C14	C11	H11	103.5	109.4
C11	C14	H14	109.5	109.4
C11	C14	H14A	109.4	109.4
C11	C14	H14B	109.5	109.5
C11	C15	C18	116.8	120.5
C15	C11	H11	103.3	109.5
C16	C13	C17	118.6	120.1
C13	C16	C19	120.6	120.0
C13	C17	C20	121.2	120.0
C13	C17	H17	119.4	120.0
C15	C18	C23	118.2	118.3
C16	C19	C22	119.8	119.9
C16	C19	H19	120.1	120.1
C17	C20	C22	119.7	120.0
C20	C17	H17	119.4	120.0
C17	C20	H20	120.2	120.0
C18	C23	H23	119.9	120.4
C19	C22	C20	120.2	120.0
C22	C19	H19	120.1	120.0
C22	C20	H20	120.2	120.0
H12	C12	H12A	109.5	109.5
H14	C14	H14A	109.5	109.5
H14	C14	H14B	109.5	109.5
H14A	C14	H14B	109.5	109.5

Torsion Angles for VOR

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C10	C13	C16	F1	358.2	359.9
F1	C16	C13	C17	179.5	180.2
C13	C16	F1	C19	180.7	180.0
F1	C16	C19	C22	180.7	180.1
F1	C16	C19	H19	0.6	0.0
N6	C15	C18	F2	179.3	180.0
N9	C23	C18	F2	180.0	180.0
C11	C15	C18	F2	3.2	360.0
C15	C18	F2	C23	179.7	180.0
F2	C18	C23	H23	360.0	0.0
C16	C19	C22	F3	179.3	180.0
C17	C20	C22	F3	180.7	180.0
C19	C22	F3	C20	180.3	179.7
F3	C22	C19	H19	359.3	0.1
F3	C22	C20	H20	0.7	359.9
N5	C12	C10	O4	331.6	65.0
C11	C10	O4	C12	235.3	240.0
C11	C10	O4	C13	116.2	120.0
O4	C10	C11	C14	64.0	300.0
O4	C10	C11	C15	202.5	60.0
O4	C10	C11	H11	310.8	180.0
C12	C10	O4	C13	240.9	239.9
O4	C10	C12	H12	210.0	305.1
O4	C10	C12	H12A	93.3	185.0
O4	C10	C13	C16	205.7	180.0
O4	C10	C13	C17	24.4	359.7
C12	N5	N7	C21	182.5	180.3
N7	N5	C12	C10	235.0	305.0
N7	N5	C12	H12	356.7	64.9
N7	N5	C12	H12A	113.3	185.0
N7	N5	C21	N8	1.9	0.0
N7	N5	C21	H21	181.9	180.0
N5	N7	C25	N8	359.6	0.3
N5	N7	C25	H25	179.6	180.0
O4	C10	C12	N5	331.6	65.0
N7	N5	C12	C21	177.1	179.7
C12	N5	N7	C25	181.6	180.0
C12	N5	C21	N8	179.4	179.8
C12	N5	C21	H21	359.4	359.8
C11	C10	C12	N5	91.2	185.0
N5	C12	C10	C13	216.2	304.9
C10	C12	N5	H12	238.3	240.1
C10	C12	N5	H12A	121.7	120.0
H12	C12	N5	H12A	243.3	240.0
N7	N5	C21	C12	182.5	180.3
C21	N5	N7	C25	359.1	359.8
C21	N5	C12	C10	57.9	125.3
C21	N5	C12	H12	179.6	245.2
C21	N5	C12	H12A	296.2	5.3
N5	C21	N8	C25	357.8	0.2
N8	C21	N5	H21	180.0	180.0
F2	C18	C15	N6	179.3	180.0
C15	N6	C24	N9	359.7	0.0
C15	N6	C24	H24	179.7	180.0
C10	C11	C15	N6	279.0	300.0
C14	C11	C15	N6	57.2	60.0
C11	C15	N6	C18	175.8	180.0
N6	C15	C11	H11	171.1	180.0
N6	C15	C18	C23	359.0	0.0
C24	N6	C15	C11	176.8	180.0
C24	N6	C15	C18	1.0	360.0
C23	N9	C24	N6	359.6	359.9
N9	C24	N6	H24	180.0	180.0
C25	N7	N5	C12	181.6	180.0
C25	N7	N5	C21	359.1	359.8
C21	N8	C25	N7	1.6	359.6
N8	C25	N7	H25	180.0	180.4
N5	C21	N8	H21	180.0	180.0
N7	C25	N8	C21	1.6	359.6
C21	N8	C25	H25	181.6	180.0
N7	C25	N8	H25	180.0	179.6
C25	N8	C21	H21	177.8	180.2
F2	C18	C23	N9	180.0	180.0
N6	C24	N9	C23	359.6	359.9
C23	N9	C24	H24	179.6	180.0
C15	C18	C23	N9	0.3	360.0
C18	C23	N9	H23	180.0	180.1
N6	C24	N9	H24	180.0	180.0
C24	N9	C23	C18	0.4	0.1
C24	N9	C23	H23	180.4	180.0
O4	C10	C11	C12	123.8	120.0
O4	C10	C11	C13	248.5	240.0
C11	C10	O4	HO4	180.0	60.0
N5	C12	C10	C11	91.2	185.0
N6	C15	C11	C10	279.0	300.0
C12	C10	C11	C13	124.8	120.0
C11	C10	C12	H12	329.5	65.0
C11	C10	C12	H12A	212.8	305.0
C11	C10	C13	C16	93.6	60.0
C11	C10	C13	C17	272.3	239.7
C14	C11	C10	C15	221.5	240.0
C14	C11	C10	H11	113.2	120.0
C10	C11	C14	H14	180.0	60.0
C10	C11	C14	H14A	300.0	180.0
C10	C11	C14	H14B	60.0	300.0
C10	C11	C15	C18	94.9	120.0
C15	C11	C10	H11	251.7	240.0
O4	C10	C12	C11	240.5	240.0
O4	C10	C12	C13	115.5	120.0
C12	C10	O4	HO4	304.8	180.0
C10	C12	N5	C21	57.9	125.3
N5	C12	C10	H12	121.7	119.9
N5	C12	C10	H12A	238.3	240.0
C11	C10	C12	C13	235.0	240.0
C12	C10	C11	C14	300.2	180.0
C12	C10	C11	C15	78.7	300.0
C12	C10	C11	H11	187.0	60.0
C12	C10	C13	C16	326.6	300.1
C12	C10	C13	C17	145.3	119.7
H12	C12	C10	H12A	116.6	120.1
F1	C16	C13	C10	358.2	359.9
O4	C10	C13	C11	112.1	120.0
O4	C10	C13	C12	239.1	239.9
C13	C10	O4	HO4	63.9	300.1
C11	C10	C13	C12	127.1	120.0
C13	C10	C11	C14	175.5	60.0
C13	C10	C11	C15	313.9	180.0
C13	C10	C11	H11	62.3	300.0
C13	C10	C12	H12	94.5	185.0
C13	C10	C12	H12A	337.9	65.0
C16	C13	C10	C17	181.3	180.3
C10	C13	C16	C19	178.9	179.9
C10	C13	C17	C20	181.0	180.1
C10	C13	C17	H17	1.0	0.0
N6	C15	C11	C14	57.2	60.0
C14	C11	C10	C12	300.2	180.0
C14	C11	C10	C13	175.5	60.0
C10	C11	C14	C15	133.4	120.0
C10	C11	C14	H11	247.3	240.0
C14	C11	C15	C18	233.1	240.0
C15	C11	C14	H11	113.8	120.0
H14	C14	C11	H14A	240.0	240.0
H14	C14	C11	H14B	120.0	120.0
H14A	C14	C11	H14B	240.0	240.0
F2	C18	C15	C11	3.2	360.0
C11	C15	N6	C24	176.8	180.0
N6	C15	C11	C18	184.1	180.0
C15	C11	C10	C12	78.7	300.0
C15	C11	C10	C13	313.9	180.0
C10	C11	C15	C14	221.8	240.0
C10	C11	C15	H11	107.9	120.0
C14	C11	C15	H11	246.1	240.0
C15	C11	C14	H14	46.5	300.0
C15	C11	C14	H14A	166.6	60.0
C15	C11	C14	H14B	286.5	180.0
C11	C15	C18	C23	183.0	180.0
F1	C16	C13	C19	179.3	180.0
C10	C13	C16	C17	178.6	179.7
C16	C13	C17	C20	359.8	359.7
C16	C13	C17	H17	179.8	179.7
C13	C16	C19	C22	0.1	0.0
C13	C16	C19	H19	180.0	180.0
C10	C13	C17	C16	181.2	180.3
C17	C13	C16	C19	0.2	0.3
C13	C17	C20	C22	359.9	359.9
C20	C17	C13	H17	180.0	180.1
C13	C17	C20	H20	179.9	180.0
F2	C18	C15	C23	180.3	180.0
C18	C15	N6	C24	1.0	360.0
N6	C15	C18	C11	176.1	180.0
N9	C23	C18	C15	0.3	360.0
C18	C15	C11	H11	347.0	0.0
C15	C18	C23	H23	180.3	180.0
F1	C16	C19	C13	180.6	180.0
F3	C22	C19	C16	179.3	180.0
C19	C16	C13	C17	0.2	0.3
C16	C19	C22	C20	359.6	359.7
C22	C19	C16	H19	180.0	180.1
F3	C22	C20	C17	180.7	180.0
C13	C17	C20	H17	180.0	179.9
C19	C22	C20	C17	0.4	0.4
C22	C20	C17	H20	180.0	179.9
F2	C18	C23	C15	179.7	180.0
C18	C23	N9	C24	0.4	0.1
N9	C23	C18	H23	180.0	179.9
F3	C22	C19	C20	179.7	180.3
C16	C19	C22	H19	180.0	179.9
C17	C20	C22	C19	0.4	0.4
C19	C22	C20	H20	180.4	180.3
F3	C22	C20	C19	180.3	179.7
C22	C20	C17	H17	179.9	180.0
C17	C20	C22	H20	180.0	180.1
C20	C22	C19	H19	179.6	179.7
HO4	O4	C10	C11	180.0	60.0
HO4	O4	C10	C12	304.8	180.0
HO4	O4	C10	C13	63.9	300.1
H11	C11	C10	C12	187.0	60.0
H11	C11	C10	C13	62.3	300.0
C10	C11	H11	C14	124.0	120.0
C10	C11	H11	C15	248.8	240.0
C14	C11	H11	C15	124.8	120.0
H11	C11	C14	H14	292.7	180.0
H11	C11	C14	H14A	52.7	300.0
H11	C11	C14	H14B	172.7	60.0
H11	C11	C15	C18	347.0	0.0
H12	C12	N5	C21	179.6	245.2
N5	C12	H12	C10	229.1	240.1
N5	C12	H12	H12A	114.5	120.0
H12	C12	C10	C13	94.5	185.0
C10	C12	H12	H12A	245.5	239.9
H12A	C12	N5	C21	296.2	5.3
N5	C12	H12A	C10	130.9	120.0
N5	C12	H12A	H12	245.5	240.0
H12A	C12	C10	C13	337.9	65.0
C10	C12	H12A	H12	114.5	120.0
H14	C14	C11	C15	46.5	300.0
H14	C14	C11	H11	292.7	180.0
C11	C14	H14	H14A	120.0	119.9
C11	C14	H14	H14B	240.0	240.0
H14A	C14	H14	H14B	120.0	120.1
H14A	C14	C11	C15	166.6	60.0
H14A	C14	C11	H11	52.7	300.0
C11	C14	H14A	H14	240.0	240.1
C11	C14	H14A	H14B	120.0	120.0
H14	C14	H14A	H14B	240.0	240.0
H14B	C14	C11	C15	286.5	180.0
H14B	C14	C11	H11	172.7	60.0
C11	C14	H14B	H14	120.0	120.0
C11	C14	H14B	H14A	240.1	240.0
H14	C14	H14B	H14A	120.0	120.0
C13	C17	H17	C20	180.0	180.1
H17	C17	C20	C22	179.9	180.0
H17	C17	C20	H20	359.9	0.1
C16	C19	H19	C22	180.0	180.1
H19	C19	C22	C20	179.6	179.7
C17	C20	H20	C22	180.0	179.9
H20	C20	C17	H17	359.9	0.1
N5	C21	H21	N8	180.0	180.0
H21	C21	N8	C25	177.8	180.2
H23	C23	N9	C24	180.4	180.0
N9	C23	H23	C18	180.0	180.1
N6	C24	H24	N9	180.0	180.0
N7	C25	H25	N8	180.0	180.4