PDB Chemical Component VOL
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for VOL
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.426 |
1.468 |
| N |
H |
0.860 |
1.009 |
| N |
H2 |
1.021 |
1.008 |
| CA |
CB |
1.451 |
1.529 |
| CA |
C |
1.471 |
1.529 |
| CA |
HA |
0.980 |
1.090 |
| CB |
CG1 |
1.522 |
1.530 |
| CB |
CG2 |
1.520 |
1.529 |
| CB |
HB |
0.981 |
1.090 |
| CG1 |
HG1 |
0.959 |
1.090 |
| CG1 |
HG2 |
0.960 |
1.090 |
| CG1 |
HG3 |
0.960 |
1.090 |
| CG2 |
H21 |
1.114 |
1.090 |
| CG2 |
H22 |
1.116 |
1.089 |
| CG2 |
H23 |
1.115 |
1.090 |
| C |
O |
1.357 |
1.429 |
| C |
HH1 |
0.970 |
1.090 |
| C |
HH2 |
0.970 |
1.090 |
| O |
HH |
0.820 |
0.966 |
Bond Angles for VOL
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
114.9 |
106.7 |
| CA |
N |
H2 |
110.8 |
106.7 |
| N |
CA |
CB |
113.2 |
109.5 |
| N |
CA |
C |
114.7 |
109.5 |
| N |
CA |
HA |
100.8 |
109.4 |
| H |
N |
H2 |
96.7 |
106.7 |
| CB |
CA |
C |
121.8 |
109.5 |
| CB |
CA |
HA |
100.8 |
109.5 |
| CA |
CB |
CG1 |
116.3 |
109.5 |
| CA |
CB |
CG2 |
115.3 |
109.5 |
| CA |
CB |
HB |
104.8 |
109.5 |
| C |
CA |
HA |
100.8 |
109.4 |
| CA |
C |
O |
119.9 |
109.6 |
| CA |
C |
HH1 |
107.4 |
109.5 |
| CA |
C |
HH2 |
107.3 |
109.5 |
| CG1 |
CB |
CG2 |
109.4 |
109.5 |
| CG1 |
CB |
HB |
104.9 |
109.4 |
| CB |
CG1 |
HG1 |
109.5 |
109.5 |
| CB |
CG1 |
HG2 |
109.4 |
109.5 |
| CB |
CG1 |
HG3 |
109.5 |
109.4 |
| CG2 |
CB |
HB |
104.9 |
109.4 |
| CB |
CG2 |
H21 |
115.4 |
109.4 |
| CB |
CG2 |
H22 |
110.1 |
109.5 |
| CB |
CG2 |
H23 |
110.1 |
109.5 |
| HG1 |
CG1 |
HG2 |
109.5 |
109.5 |
| HG1 |
CG1 |
HG3 |
109.5 |
109.5 |
| HG2 |
CG1 |
HG3 |
109.5 |
109.5 |
| H21 |
CG2 |
H22 |
110.1 |
109.4 |
| H21 |
CG2 |
H23 |
110.1 |
109.4 |
| H22 |
CG2 |
H23 |
100.0 |
109.6 |
| O |
C |
HH1 |
107.3 |
109.4 |
| O |
C |
HH2 |
107.4 |
109.4 |
| C |
O |
HH |
109.4 |
106.9 |
| HH1 |
C |
HH2 |
106.9 |
109.5 |
Torsion Angles for VOL
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
251.7 |
246.2 |
| CB |
CA |
N |
C |
214.2 |
239.9 |
| CB |
CA |
N |
HA |
106.9 |
120.0 |
| N |
CA |
CB |
CG1 |
186.7 |
300.0 |
| N |
CA |
CB |
CG2 |
316.6 |
60.1 |
| N |
CA |
CB |
HB |
71.4 |
180.0 |
| C |
CA |
N |
HA |
252.7 |
240.1 |
| N |
CA |
C |
O |
45.3 |
59.9 |
| N |
CA |
C |
HH1 |
168.0 |
299.9 |
| N |
CA |
C |
HH2 |
282.6 |
180.0 |
| CA |
N |
H |
H2 |
116.7 |
113.8 |
| H |
N |
CA |
CB |
306.4 |
300.0 |
| H |
N |
CA |
C |
92.3 |
60.1 |
| H |
N |
CA |
HA |
199.6 |
180.0 |
| CA |
N |
H2 |
H |
240.1 |
246.2 |
| H2 |
N |
CA |
CB |
54.8 |
53.8 |
| H2 |
N |
CA |
C |
200.6 |
173.9 |
| H2 |
N |
CA |
HA |
307.9 |
293.8 |
| CB |
CA |
N |
H |
306.4 |
300.0 |
| CB |
CA |
N |
H2 |
54.8 |
53.8 |
| N |
CA |
CB |
C |
143.1 |
120.0 |
| N |
CA |
CB |
HA |
253.1 |
240.0 |
| C |
CA |
CB |
HA |
110.0 |
120.0 |
| CB |
CA |
C |
O |
188.0 |
180.0 |
| CB |
CA |
C |
HH1 |
310.7 |
60.0 |
| CB |
CA |
C |
HH2 |
65.2 |
300.0 |
| CG1 |
CB |
CA |
CG2 |
230.1 |
239.9 |
| CG1 |
CB |
CA |
HB |
115.3 |
120.0 |
| CA |
CB |
CG1 |
HG1 |
186.5 |
180.0 |
| CA |
CB |
CG1 |
HG2 |
66.5 |
300.1 |
| CA |
CB |
CG1 |
HG3 |
306.5 |
60.0 |
| CG2 |
CB |
CA |
HB |
245.3 |
240.0 |
| CA |
CB |
CG2 |
H21 |
180.0 |
300.0 |
| CA |
CB |
CG2 |
H22 |
305.3 |
59.9 |
| CA |
CB |
CG2 |
H23 |
54.7 |
180.0 |
| C |
CA |
N |
H |
92.3 |
60.1 |
| C |
CA |
N |
H2 |
200.6 |
173.9 |
| N |
CA |
C |
CB |
217.4 |
240.0 |
| N |
CA |
C |
HA |
107.3 |
119.9 |
| CB |
CA |
C |
HA |
249.9 |
240.0 |
| C |
CA |
CB |
CG1 |
43.5 |
180.0 |
| C |
CA |
CB |
CG2 |
173.5 |
300.0 |
| C |
CA |
CB |
HB |
288.2 |
60.0 |
| O |
C |
CA |
HH1 |
237.3 |
120.0 |
| O |
C |
CA |
HH2 |
122.7 |
240.0 |
| CA |
C |
O |
HH |
309.4 |
180.0 |
| HH1 |
C |
CA |
HH2 |
245.4 |
120.0 |
| HA |
CA |
N |
H |
199.6 |
180.0 |
| HA |
CA |
N |
H2 |
307.9 |
293.8 |
| N |
CA |
HA |
CB |
116.4 |
120.0 |
| N |
CA |
HA |
C |
242.0 |
240.1 |
| CB |
CA |
HA |
C |
125.6 |
120.1 |
| HA |
CA |
CB |
CG1 |
293.5 |
60.0 |
| HA |
CA |
CB |
CG2 |
63.5 |
180.0 |
| HA |
CA |
CB |
HB |
178.2 |
300.0 |
| HA |
CA |
C |
O |
298.0 |
300.0 |
| HA |
CA |
C |
HH1 |
60.7 |
180.0 |
| HA |
CA |
C |
HH2 |
175.3 |
60.0 |
| CG1 |
CB |
CA |
C |
43.5 |
180.0 |
| CG1 |
CB |
CA |
HA |
293.5 |
60.0 |
| CA |
CB |
CG1 |
CG2 |
132.7 |
120.1 |
| CA |
CB |
CG1 |
HB |
244.8 |
240.0 |
| CG2 |
CB |
CG1 |
HB |
112.0 |
119.9 |
| CG1 |
CB |
CG2 |
H21 |
313.2 |
60.1 |
| CG1 |
CB |
CG2 |
H22 |
78.5 |
180.0 |
| CG1 |
CB |
CG2 |
H23 |
187.9 |
300.1 |
| HG1 |
CG1 |
CB |
HG2 |
120.0 |
239.9 |
| HG1 |
CG1 |
CB |
HG3 |
240.0 |
120.0 |
| HG2 |
CG1 |
CB |
HG3 |
120.0 |
240.1 |
| CG2 |
CB |
CA |
C |
173.5 |
300.0 |
| CG2 |
CB |
CA |
HA |
63.5 |
180.0 |
| CA |
CB |
CG2 |
CG1 |
226.8 |
239.9 |
| CA |
CB |
CG2 |
HB |
114.7 |
120.0 |
| CG1 |
CB |
CG2 |
HB |
247.9 |
240.1 |
| CG2 |
CB |
CG1 |
HG1 |
53.8 |
59.9 |
| CG2 |
CB |
CG1 |
HG2 |
293.7 |
180.0 |
| CG2 |
CB |
CG1 |
HG3 |
173.8 |
299.9 |
| H21 |
CG2 |
CB |
H22 |
234.7 |
240.1 |
| H21 |
CG2 |
CB |
H23 |
125.3 |
120.0 |
| H22 |
CG2 |
CB |
H23 |
250.6 |
239.9 |
| HB |
CB |
CA |
C |
288.2 |
60.0 |
| HB |
CB |
CA |
HA |
178.2 |
300.0 |
| CA |
CB |
HB |
CG1 |
123.0 |
120.0 |
| CA |
CB |
HB |
CG2 |
238.1 |
240.0 |
| CG1 |
CB |
HB |
CG2 |
115.2 |
120.0 |
| HB |
CB |
CG1 |
HG1 |
301.7 |
300.0 |
| HB |
CB |
CG1 |
HG2 |
181.7 |
60.1 |
| HB |
CB |
CG1 |
HG3 |
61.8 |
180.0 |
| HB |
CB |
CG2 |
H21 |
65.3 |
180.0 |
| HB |
CB |
CG2 |
H22 |
190.6 |
299.9 |
| HB |
CB |
CG2 |
H23 |
300.0 |
60.0 |
| HG1 |
CG1 |
CB |
CG2 |
53.8 |
59.9 |
| HG1 |
CG1 |
CB |
HB |
301.7 |
300.0 |
| CB |
CG1 |
HG1 |
HG2 |
240.0 |
120.0 |
| CB |
CG1 |
HG1 |
HG3 |
120.0 |
240.0 |
| HG2 |
CG1 |
HG1 |
HG3 |
240.0 |
120.0 |
| HG2 |
CG1 |
CB |
CG2 |
293.7 |
180.0 |
| HG2 |
CG1 |
CB |
HB |
181.7 |
60.1 |
| CB |
CG1 |
HG2 |
HG1 |
120.0 |
240.0 |
| CB |
CG1 |
HG2 |
HG3 |
240.0 |
119.9 |
| HG1 |
CG1 |
HG2 |
HG3 |
120.1 |
240.0 |
| HG3 |
CG1 |
CB |
CG2 |
173.8 |
299.9 |
| HG3 |
CG1 |
CB |
HB |
61.8 |
180.0 |
| CB |
CG1 |
HG3 |
HG1 |
240.0 |
120.0 |
| CB |
CG1 |
HG3 |
HG2 |
119.9 |
240.0 |
| HG1 |
CG1 |
HG3 |
HG2 |
239.9 |
120.1 |
| H21 |
CG2 |
CB |
HB |
65.3 |
180.0 |
| CB |
CG2 |
H21 |
H22 |
125.3 |
120.0 |
| CB |
CG2 |
H21 |
H23 |
234.7 |
240.0 |
| H22 |
CG2 |
H21 |
H23 |
109.3 |
120.1 |
| H22 |
CG2 |
CB |
HB |
190.6 |
299.9 |
| CB |
CG2 |
H22 |
H21 |
231.7 |
240.1 |
| CB |
CG2 |
H22 |
H23 |
115.9 |
120.1 |
| H21 |
CG2 |
H22 |
H23 |
244.2 |
240.0 |
| H23 |
CG2 |
CB |
HB |
300.0 |
60.0 |
| CB |
CG2 |
H23 |
H21 |
128.3 |
119.9 |
| CB |
CG2 |
H23 |
H22 |
244.1 |
239.9 |
| H21 |
CG2 |
H23 |
H22 |
115.8 |
120.0 |
| O |
C |
CA |
HA |
298.0 |
300.0 |
| CA |
C |
O |
HH1 |
122.7 |
240.0 |
| CA |
C |
O |
HH2 |
237.3 |
120.1 |
| HH1 |
C |
O |
HH2 |
114.6 |
240.1 |
| HH1 |
C |
CA |
HA |
60.7 |
180.0 |
| CA |
C |
HH1 |
O |
229.8 |
120.1 |
| CA |
C |
HH1 |
HH2 |
114.9 |
240.0 |
| O |
C |
HH1 |
HH2 |
245.1 |
119.9 |
| HH1 |
C |
O |
HH |
186.7 |
300.0 |
| HH2 |
C |
CA |
HA |
175.3 |
60.0 |
| CA |
C |
HH2 |
O |
130.2 |
239.9 |
| CA |
C |
HH2 |
HH1 |
245.1 |
120.0 |
| O |
C |
HH2 |
HH1 |
114.9 |
240.1 |
| HH2 |
C |
O |
HH |
72.1 |
60.0 |
| HH |
O |
C |
HH1 |
186.7 |
300.0 |
| HH |
O |
C |
HH2 |
72.1 |
60.0 |