PDB Chemical Component VLM
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for VLM
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.481 |
1.469 |
| N |
H |
1.000 |
1.009 |
| N |
H2 |
1.000 |
1.009 |
| CA |
C |
1.522 |
1.507 |
| CA |
CB |
1.540 |
1.530 |
| CA |
HA |
1.099 |
1.090 |
| C |
O |
1.225 |
1.213 |
| C |
NT |
1.249 |
1.348 |
| CB |
CG1 |
1.519 |
1.529 |
| CB |
CG2 |
1.521 |
1.531 |
| CB |
HB |
1.100 |
1.090 |
| CG1 |
HG11 |
1.100 |
1.090 |
| CG1 |
HG12 |
1.100 |
1.091 |
| CG1 |
HG13 |
1.100 |
1.090 |
| CG2 |
HG21 |
1.100 |
1.090 |
| CG2 |
HG22 |
1.100 |
1.090 |
| CG2 |
HG23 |
1.100 |
1.089 |
| NT |
HNT1 |
1.000 |
0.970 |
| NT |
HNT2 |
1.000 |
0.970 |
Bond Angles for VLM
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
109.5 |
111.0 |
| CA |
N |
H2 |
109.4 |
111.0 |
| N |
CA |
C |
110.0 |
109.5 |
| N |
CA |
CB |
109.8 |
109.5 |
| N |
CA |
HA |
108.9 |
109.5 |
| H |
N |
H2 |
109.5 |
111.0 |
| C |
CA |
CB |
109.7 |
109.4 |
| C |
CA |
HA |
109.0 |
109.5 |
| CA |
C |
O |
120.4 |
120.0 |
| CA |
C |
NT |
116.9 |
120.0 |
| CB |
CA |
HA |
109.3 |
109.5 |
| CA |
CB |
CG1 |
110.7 |
109.5 |
| CA |
CB |
CG2 |
109.1 |
109.4 |
| CA |
CB |
HB |
109.3 |
109.5 |
| O |
C |
NT |
122.8 |
120.0 |
| C |
NT |
HNT1 |
109.8 |
120.0 |
| C |
NT |
HNT2 |
125.2 |
120.0 |
| CG1 |
CB |
CG2 |
110.7 |
109.4 |
| CG1 |
CB |
HB |
107.6 |
109.5 |
| CB |
CG1 |
HG11 |
109.5 |
109.5 |
| CB |
CG1 |
HG12 |
109.5 |
109.4 |
| CB |
CG1 |
HG13 |
109.4 |
109.5 |
| CG2 |
CB |
HB |
109.3 |
109.5 |
| CB |
CG2 |
HG21 |
109.5 |
109.4 |
| CB |
CG2 |
HG22 |
109.5 |
109.5 |
| CB |
CG2 |
HG23 |
109.4 |
109.5 |
| HG11 |
CG1 |
HG12 |
109.5 |
109.4 |
| HG11 |
CG1 |
HG13 |
109.5 |
109.5 |
| HG12 |
CG1 |
HG13 |
109.5 |
109.5 |
| HG21 |
CG2 |
HG22 |
109.5 |
109.4 |
| HG21 |
CG2 |
HG23 |
109.4 |
109.5 |
| HG22 |
CG2 |
HG23 |
109.5 |
109.5 |
| HNT1 |
NT |
HNT2 |
125.1 |
120.0 |
Torsion Angles for VLM
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
240.0 |
236.0 |
| C |
CA |
N |
CB |
120.9 |
120.0 |
| C |
CA |
N |
HA |
240.5 |
239.9 |
| N |
CA |
C |
O |
305.5 |
340.1 |
| N |
CA |
C |
NT |
126.1 |
160.1 |
| CB |
CA |
N |
HA |
119.6 |
120.0 |
| N |
CA |
CB |
CG1 |
171.8 |
180.0 |
| N |
CA |
CB |
CG2 |
293.9 |
300.0 |
| N |
CA |
CB |
HB |
53.3 |
60.0 |
| CA |
N |
H |
H2 |
120.0 |
124.0 |
| H |
N |
CA |
C |
291.7 |
60.0 |
| H |
N |
CA |
CB |
170.8 |
300.0 |
| H |
N |
CA |
HA |
51.2 |
180.0 |
| CA |
N |
H2 |
H |
240.0 |
236.0 |
| H2 |
N |
CA |
C |
51.7 |
184.0 |
| H2 |
N |
CA |
CB |
290.8 |
64.0 |
| H2 |
N |
CA |
HA |
171.1 |
304.0 |
| C |
CA |
N |
H |
291.7 |
60.0 |
| C |
CA |
N |
H2 |
51.7 |
184.0 |
| N |
CA |
C |
CB |
239.1 |
240.0 |
| N |
CA |
C |
HA |
119.4 |
120.0 |
| CB |
CA |
C |
HA |
240.4 |
240.0 |
| C |
CA |
CB |
CG1 |
50.7 |
60.0 |
| C |
CA |
CB |
CG2 |
172.9 |
180.0 |
| C |
CA |
CB |
HB |
292.3 |
300.0 |
| O |
C |
CA |
NT |
179.4 |
180.0 |
| CA |
C |
NT |
HNT1 |
359.7 |
359.9 |
| CA |
C |
NT |
HNT2 |
179.7 |
180.0 |
| CB |
CA |
N |
H |
170.8 |
300.0 |
| CB |
CA |
N |
H2 |
290.8 |
64.0 |
| N |
CA |
CB |
C |
121.1 |
120.0 |
| N |
CA |
CB |
HA |
240.6 |
240.0 |
| C |
CA |
CB |
HA |
119.5 |
120.0 |
| CB |
CA |
C |
O |
66.4 |
100.0 |
| CB |
CA |
C |
NT |
247.0 |
280.0 |
| CG1 |
CB |
CA |
CG2 |
237.9 |
240.1 |
| CG1 |
CB |
CA |
HB |
118.4 |
120.1 |
| CA |
CB |
CG1 |
HG11 |
192.3 |
180.0 |
| CA |
CB |
CG1 |
HG12 |
312.3 |
299.9 |
| CA |
CB |
CG1 |
HG13 |
72.3 |
59.9 |
| CG2 |
CB |
CA |
HB |
240.6 |
240.0 |
| CA |
CB |
CG2 |
HG21 |
94.1 |
60.0 |
| CA |
CB |
CG2 |
HG22 |
214.1 |
179.9 |
| CA |
CB |
CG2 |
HG23 |
334.1 |
300.0 |
| HA |
CA |
N |
H |
51.2 |
180.0 |
| HA |
CA |
N |
H2 |
171.1 |
304.0 |
| N |
CA |
HA |
C |
239.9 |
240.0 |
| N |
CA |
HA |
CB |
120.0 |
120.0 |
| C |
CA |
HA |
CB |
240.1 |
240.0 |
| HA |
CA |
C |
O |
186.0 |
220.0 |
| HA |
CA |
C |
NT |
6.6 |
40.0 |
| HA |
CA |
CB |
CG1 |
291.2 |
300.0 |
| HA |
CA |
CB |
CG2 |
53.4 |
60.0 |
| HA |
CA |
CB |
HB |
172.8 |
180.0 |
| O |
C |
CA |
CB |
66.4 |
100.0 |
| O |
C |
CA |
HA |
186.0 |
220.0 |
| CA |
C |
O |
NT |
180.6 |
180.0 |
| O |
C |
NT |
HNT1 |
180.3 |
179.9 |
| O |
C |
NT |
HNT2 |
0.4 |
0.0 |
| NT |
C |
CA |
CB |
247.0 |
280.0 |
| NT |
C |
CA |
HA |
6.6 |
40.0 |
| CA |
C |
NT |
O |
179.4 |
180.0 |
| HNT1 |
NT |
C |
HNT2 |
180.0 |
179.9 |
| CG1 |
CB |
CA |
HA |
291.2 |
300.0 |
| CA |
CB |
CG1 |
CG2 |
121.2 |
120.0 |
| CA |
CB |
CG1 |
HB |
240.6 |
239.9 |
| CG2 |
CB |
CG1 |
HB |
119.4 |
120.0 |
| CG1 |
CB |
CG2 |
HG21 |
216.2 |
180.0 |
| CG1 |
CB |
CG2 |
HG22 |
336.2 |
299.9 |
| CG1 |
CB |
CG2 |
HG23 |
96.3 |
60.0 |
| HG11 |
CG1 |
CB |
HG12 |
240.0 |
240.1 |
| HG11 |
CG1 |
CB |
HG13 |
120.0 |
120.1 |
| HG12 |
CG1 |
CB |
HG13 |
240.0 |
240.0 |
| CG2 |
CB |
CA |
HA |
53.4 |
60.0 |
| CA |
CB |
CG2 |
CG1 |
237.9 |
240.0 |
| CA |
CB |
CG2 |
HB |
119.5 |
120.0 |
| CG1 |
CB |
CG2 |
HB |
241.6 |
240.0 |
| CG2 |
CB |
CG1 |
HG11 |
71.1 |
60.1 |
| CG2 |
CB |
CG1 |
HG12 |
191.1 |
180.0 |
| CG2 |
CB |
CG1 |
HG13 |
311.1 |
300.0 |
| HG21 |
CG2 |
CB |
HG22 |
240.0 |
240.1 |
| HG21 |
CG2 |
CB |
HG23 |
119.9 |
120.0 |
| HG22 |
CG2 |
CB |
HG23 |
239.9 |
240.0 |
| HB |
CB |
CA |
HA |
172.8 |
180.0 |
| CA |
CB |
HB |
CG1 |
120.3 |
120.1 |
| CA |
CB |
HB |
CG2 |
240.6 |
240.0 |
| CG1 |
CB |
HB |
CG2 |
120.3 |
120.0 |
| HB |
CB |
CG1 |
HG11 |
311.8 |
300.1 |
| HB |
CB |
CG1 |
HG12 |
71.8 |
60.0 |
| HB |
CB |
CG1 |
HG13 |
191.8 |
180.0 |
| HB |
CB |
CG2 |
HG21 |
334.6 |
300.0 |
| HB |
CB |
CG2 |
HG22 |
94.6 |
59.9 |
| HB |
CB |
CG2 |
HG23 |
214.7 |
180.0 |
| HG11 |
CG1 |
CB |
CG2 |
71.1 |
60.1 |
| HG11 |
CG1 |
CB |
HB |
311.8 |
300.1 |
| CB |
CG1 |
HG11 |
HG12 |
120.0 |
119.9 |
| CB |
CG1 |
HG11 |
HG13 |
240.0 |
239.9 |
| HG12 |
CG1 |
HG11 |
HG13 |
120.0 |
120.0 |
| HG12 |
CG1 |
CB |
CG2 |
191.1 |
180.0 |
| HG12 |
CG1 |
CB |
HB |
71.8 |
60.0 |
| CB |
CG1 |
HG12 |
HG11 |
240.0 |
240.0 |
| CB |
CG1 |
HG12 |
HG13 |
120.0 |
120.0 |
| HG11 |
CG1 |
HG12 |
HG13 |
240.0 |
240.0 |
| HG13 |
CG1 |
CB |
CG2 |
311.1 |
300.0 |
| HG13 |
CG1 |
CB |
HB |
191.8 |
180.0 |
| CB |
CG1 |
HG13 |
HG11 |
120.0 |
120.1 |
| CB |
CG1 |
HG13 |
HG12 |
240.0 |
240.0 |
| HG11 |
CG1 |
HG13 |
HG12 |
120.0 |
120.0 |
| HG21 |
CG2 |
CB |
HB |
334.6 |
300.0 |
| CB |
CG2 |
HG21 |
HG22 |
120.0 |
119.9 |
| CB |
CG2 |
HG21 |
HG23 |
240.1 |
240.0 |
| HG22 |
CG2 |
HG21 |
HG23 |
120.0 |
120.1 |
| HG22 |
CG2 |
CB |
HB |
94.6 |
59.9 |
| CB |
CG2 |
HG22 |
HG21 |
240.0 |
240.1 |
| CB |
CG2 |
HG22 |
HG23 |
120.0 |
120.0 |
| HG21 |
CG2 |
HG22 |
HG23 |
240.0 |
239.9 |
| HG23 |
CG2 |
CB |
HB |
214.7 |
180.0 |
| CB |
CG2 |
HG23 |
HG21 |
120.0 |
120.0 |
| CB |
CG2 |
HG23 |
HG22 |
240.0 |
240.0 |
| HG21 |
CG2 |
HG23 |
HG22 |
120.0 |
120.0 |
| C |
NT |
HNT1 |
HNT2 |
180.0 |
180.1 |
| C |
NT |
HNT2 |
HNT1 |
180.0 |
179.9 |