PDB Chemical Component VJ6

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for VJ6

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C28 O8 1.386 1.429
O8 C18 1.373 1.359
C19 C18 1.483 1.387
C19 C20 1.352 1.386
C18 C17 1.358 1.389
N1 C20 1.420 1.395
N1 C1 1.425 1.333
C20 C21 1.494 1.392
C17 C16 1.491 1.381
O1 C1 1.215 1.216
C21 C16 1.363 1.380
C16 C15 1.491 1.509
C1 C2 1.498 1.459
C15 O9 1.394 1.431
C2 C22 1.493 1.508
C2 C3 1.395 1.333
O9 C13 1.385 1.428
C25 C8 1.507 1.507
C13 C12 1.501 1.531
C3 C4 1.511 1.507
O5 C14 1.396 1.430
O5 C11 1.377 1.429
C10 C26 1.487 1.530
C10 C11 1.513 1.530
C10 C9 1.504 1.507
O7 C23 1.225 1.215
C8 C9 1.392 1.311
C8 C7 1.499 1.506
C4 C5 1.507 1.531
C12 C11 1.513 1.529
C12 O6 1.366 1.429
C6 C5 1.494 1.531
C6 C7 1.492 1.531
C6 O2 1.386 1.451
O6 C27 1.377 1.429
O3 C7 1.375 1.452
O3 C24 1.377 1.347
C23 O2 1.379 1.346
C23 N3 1.434 1.348
C24 N2 1.429 1.347
C24 O4 1.223 1.215
N1 H1 1.000 0.969
N2 H2 1.000 0.970
N2 H3 1.000 0.969
C3 H4 1.080 1.081
N3 H5 1.000 0.970
N3 H6 1.000 0.971
C4 H7 1.099 1.090
C4 H8 1.100 1.090
C5 H9 1.100 1.089
C5 H10 1.100 1.089
C6 H11 1.100 1.090
C7 H12 1.100 1.090
C9 H13 1.080 1.079
C10 H14 1.100 1.090
C11 H15 1.100 1.090
C12 H16 1.100 1.090
C13 H17 1.100 1.090
C13 H18 1.100 1.090
C14 H19 1.100 1.090
C14 H20 1.100 1.090
C14 H21 1.100 1.090
C15 H22 1.100 1.090
C15 H23 1.100 1.090
C17 H24 1.081 1.080
C19 H25 1.080 1.080
C21 H26 1.080 1.080
C22 H27 1.100 1.091
C22 H28 1.100 1.090
C22 H29 1.100 1.089
C25 H30 1.100 1.090
C25 H31 1.100 1.089
C25 H32 1.100 1.090
C26 H33 1.100 1.089
C26 H34 1.099 1.090
C26 H35 1.100 1.090
C27 H36 1.100 1.090
C27 H37 1.100 1.089
C27 H38 1.100 1.090
C28 H39 1.100 1.090
C28 H40 1.100 1.090
C28 H41 1.100 1.089

Bond Angles for VJ6

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O8 C18 C17 122.2 120.0
N1 C20 C19 118.0 121.5
C19 C20 C21 120.2 119.8
C20 C19 H25 120.2 120.0
C18 C17 H24 120.4 120.1
N1 C20 C21 121.8 118.7
C20 N1 H1 116.4 119.9
N1 C1 C2 123.1 125.0
C20 C21 H26 120.1 120.0
O1 C1 C2 121.0 117.5
C16 C15 H22 109.3 109.6
C16 C15 H23 109.3 109.8
C1 C2 C22 118.2 120.4
C1 C2 C3 121.7 119.7
C3 C2 C22 120.1 119.9
C2 C22 H27 109.5 109.4
C2 C22 H28 109.5 109.5
C2 C22 H29 109.5 109.5
C2 C3 C4 122.7 120.4
C2 C3 H4 118.7 119.6
O9 C13 C12 111.6 109.2
O9 C13 H17 109.0 109.5
O9 C13 H18 108.9 109.5
C13 C12 H16 108.7 109.4
C3 C4 C5 109.9 109.1
C4 C3 H4 118.6 119.9
C3 C4 H7 109.4 109.5
C3 C4 H8 109.4 109.5
C11 O5 C14 120.6 114.0
O5 C14 H19 109.5 109.4
O5 C14 H20 109.4 109.5
O5 C14 H21 109.5 109.5
O5 C11 C10 109.7 109.5
O5 C11 H15 110.0 109.5
C11 C10 C26 109.4 109.5
C26 C10 H14 109.7 109.5
C10 C26 H33 109.5 109.5
C10 C26 H34 109.5 109.5
C10 C26 H35 109.5 109.5
C11 C10 H14 109.3 109.5
C10 C11 H15 108.2 109.4
C10 C9 H13 117.6 120.1
C8 C9 H13 117.6 120.0
C8 C7 H12 108.7 109.5
C5 C4 H7 109.3 109.6
C5 C4 H8 109.3 109.6
C4 C5 H9 109.1 109.4
C4 C5 H10 109.1 109.4
C12 C11 H15 108.1 109.4
C12 O6 C27 119.5 114.0
C6 C5 H9 109.1 109.5
C6 C5 H10 109.1 109.5
O3 C7 C6 108.1 109.4
C7 C6 H11 108.5 109.5
C6 C7 H12 108.8 109.5
O6 C27 H36 109.5 109.5
O6 C27 H37 109.5 109.5
O6 C27 H38 109.5 109.5
C7 O3 C24 119.5 117.0
O3 C7 H12 110.5 109.4
O3 C24 O4 121.3 120.0
C23 N3 H5 120.0 120.0
C23 N3 H6 120.0 120.0
C24 N2 H2 120.0 120.0
C24 N2 H3 120.0 120.0
H2 N2 H3 120.0 120.0
H5 N3 H6 120.0 120.0
H7 C4 H8 109.5 109.5
H9 C5 H10 109.5 109.5
H17 C13 H18 109.4 109.6
H19 C14 H20 109.5 109.5
H19 C14 H21 109.4 109.5
H20 C14 H21 109.5 109.4
H22 C15 H23 109.5 109.6
H27 C22 H28 109.4 109.4
H27 C22 H29 109.5 109.5
H28 C22 H29 109.4 109.5
H30 C25 H31 109.5 109.5
H30 C25 H32 109.4 109.5
H31 C25 H32 109.5 109.5
H33 C26 H34 109.5 109.5
H33 C26 H35 109.4 109.4
H34 C26 H35 109.5 109.4
H36 C27 H37 109.4 109.5
H36 C27 H38 109.5 109.4
H37 C27 H38 109.5 109.5
H39 C28 H40 109.5 109.4
H39 C28 H41 109.5 109.5
H40 C28 H41 109.5 109.4

Torsion Angles for VJ6

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O8 C18 C17 H24 359.5 359.8
N1 C20 C19 C18 178.7 180.3
C19 C18 C17 H24 181.1 179.9
N1 C20 C19 C21 176.7 181.4
C19 C20 N1 H1 318.1 15.2
C19 C20 C21 H26 178.1 180.3
C19 C20 N1 C21 183.3 178.7
N1 C20 C19 H25 358.6 0.3
C20 N1 C1 C2 358.0 226.6
N1 C20 C21 H26 1.5 359.0
O1 C1 N1 C2 180.6 180.4
N1 C1 C2 C22 124.8 2.7
N1 C1 C2 C3 302.6 182.7
N1 C20 C21 C19 183.4 178.7
C21 C20 C19 H25 181.9 179.0
C21 C20 N1 H1 134.8 196.5
O8 C18 C17 C16 179.5 179.8
C17 C16 C15 H22 36.8 74.8
C17 C16 C15 H23 156.6 314.3
N1 C1 O1 C2 179.4 179.6
O1 C1 C2 C22 304.1 182.3
O1 C1 C2 C3 122.0 2.3
N1 C20 C21 C16 181.5 179.0
C21 C16 C15 H22 217.1 254.5
C21 C16 C15 H23 336.9 134.1
H22 C15 C16 H23 240.2 120.5
C3 C2 C1 C22 177.9 180.0
C1 C2 C22 H27 180.0 360.0
C1 C2 C22 H28 300.0 119.9
C1 C2 C22 H29 60.0 240.0
C1 C2 C3 C4 182.4 181.3
C1 C2 C3 H4 2.4 2.2
C15 O9 C13 H17 298.3 325.2
C15 O9 C13 H18 57.7 85.4
C1 C2 C22 C3 177.9 180.0
C22 C2 C3 C4 0.2 1.3
C22 C2 C3 H4 180.2 182.2
H27 C22 C2 H28 240.0 240.1
H27 C22 C2 H29 120.1 120.0
H28 C22 C2 H29 240.0 239.9
C1 C2 C3 C22 182.2 180.0
C3 C2 C22 H27 2.1 180.0
C3 C2 C22 H28 122.1 299.9
C3 C2 C22 H29 242.1 59.9
C2 C3 C4 C5 203.7 146.8
C4 C3 C2 H4 180.0 179.1
C2 C3 C4 H7 323.7 266.7
C2 C3 C4 H8 83.6 26.8
O9 C13 C12 H16 50.8 110.2
H17 C13 O9 H18 240.7 239.8
C25 C8 C9 H13 176.9 180.4
C25 C8 C7 H12 175.4 183.4
O9 C13 C12 H17 120.3 119.9
O9 C13 C12 H18 239.7 240.1
C13 C12 C11 H15 169.7 50.8
C13 C12 O6 C27 178.9 89.8
C4 C3 C2 C22 0.2 1.3
C2 C3 C4 H4 180.0 180.9
C5 C4 C3 H7 239.9 240.1
C5 C4 C3 H8 120.1 120.0
C3 C4 C5 H9 57.2 30.4
C3 C4 C5 H10 176.8 150.4
H7 C4 C3 H8 240.1 239.9
C14 O5 C11 C10 220.4 237.5
C14 O5 C11 H15 339.3 357.4
H19 C14 O5 H20 240.0 240.0
H19 C14 O5 H21 120.0 120.1
H20 C14 O5 H21 240.0 240.0
C11 O5 C14 H19 180.0 302.2
C11 O5 C14 H20 300.0 62.2
C11 O5 C14 H21 60.0 182.1
O5 C11 C10 C26 67.4 30.0
O5 C11 C10 H14 307.3 270.0
C10 C11 O5 H15 241.1 240.1
C12 C11 O5 H15 118.3 119.9
C11 C10 C26 H14 240.1 240.0
C26 C10 C11 H15 307.4 270.1
C26 C10 C9 H13 78.3 79.2
H33 C26 C10 H34 240.0 239.9
H33 C26 C10 H35 120.0 119.9
H34 C26 C10 H35 240.0 240.0
C10 C11 O5 C14 220.4 237.5
O5 C11 C10 H15 120.0 119.9
C26 C10 C11 H14 120.1 120.0
C11 C10 C26 H33 180.0 60.0
C11 C10 C26 H34 300.0 180.1
C11 C10 C26 H35 60.0 300.0
C11 C10 C9 H13 318.4 319.2
C12 C11 C10 H15 240.9 240.0
O5 C11 C10 C9 186.7 150.0
C8 C9 C10 H13 180.0 179.5
O7 C23 N3 H5 360.0 0.0
O7 C23 N3 H6 180.0 180.0
C10 C9 C8 H13 180.0 180.5
C9 C8 C7 H12 357.9 3.0
C8 C7 C6 H11 60.8 328.4
C6 C7 C8 H12 120.4 120.1
C8 C7 O3 C24 88.5 89.9
O3 C7 C8 H12 239.7 240.1
C5 C4 C3 H4 23.7 325.8
C3 C4 C5 H7 120.1 119.8
C3 C4 C5 H8 239.9 240.1
C6 C5 C4 H9 239.8 240.0
C6 C5 C4 H10 120.2 120.0
H7 C4 C5 H8 119.8 120.2
H9 C5 C4 H10 240.4 240.1
O9 C13 C12 C11 168.5 230.2
C12 C11 O5 C14 97.6 117.3
O5 C11 C12 H15 240.6 240.1
C12 C11 C10 C26 188.4 150.1
C12 C11 C10 H14 68.2 30.1
C10 C11 C12 H15 119.1 120.0
C11 C12 O6 C27 298.4 210.0
C12 O6 C27 H36 180.0 180.0
C12 O6 C27 H37 300.0 300.0
C12 O6 C27 H38 60.0 60.0
C6 C5 C4 H7 177.0 150.5
C6 C5 C4 H8 57.1 30.3
C4 C5 C6 H9 120.2 120.0
C4 C5 C6 H10 239.8 240.0
O3 C7 C6 C5 181.8 88.4
H9 C5 C6 H10 119.6 120.0
C8 C7 C6 H12 239.7 239.9
C7 C6 C5 H9 56.7 36.5
C7 C6 C5 H10 297.0 276.5
C6 C7 O3 C24 210.3 210.0
O3 C7 C6 H12 120.1 120.0
H36 C27 O6 H37 240.0 240.0
H36 C27 O6 H38 120.0 119.9
H37 C27 O6 H38 240.0 239.9
C8 C7 O3 H12 119.2 119.9
O3 C7 C6 H11 301.2 208.4
C6 C7 O3 H12 241.0 240.0
C7 O3 C24 O4 352.5 0.0
C24 O3 C7 C6 210.3 210.0
C24 O3 C7 H12 329.3 330.0
O3 C24 N2 H2 184.2 0.1
O3 C24 N2 H3 4.2 180.0
H5 N3 C23 H6 180.0 180.0
H2 N2 C24 H3 180.0 180.1
O4 C24 N2 H2 0.0 180.0
O4 C24 N2 H3 180.0 359.9
H1 N1 C20 C19 318.1 15.2
H1 N1 C20 C21 134.8 196.5
H1 N1 C1 C2 178.0 46.6
C24 N2 H2 H3 180.0 179.9
C24 N2 H3 H2 180.0 180.1
H4 C3 C2 C22 180.2 182.2
C2 C3 H4 C4 180.0 179.1
H4 C3 C4 C5 23.7 325.8
H4 C3 C4 H7 143.7 85.7
H4 C3 C4 H8 263.6 205.9
C23 N3 H5 H6 180.0 180.0
C23 N3 H6 H5 180.0 180.0
C3 C4 H7 C5 239.6 240.4
H7 C4 C3 H4 143.7 85.7
C3 C4 H7 H8 119.8 120.1
C5 C4 H7 H8 240.2 239.8
H7 C4 C5 H9 297.1 270.6
H7 C4 C5 H10 56.7 30.5
C3 C4 H8 C5 120.4 119.7
H8 C4 C3 H4 263.6 205.9
C3 C4 H8 H7 240.2 239.9
C5 C4 H8 H7 119.8 120.2
H8 C4 C5 H9 177.3 150.3
H8 C4 C5 H10 296.9 270.3
H9 C5 C4 H7 297.1 270.6
H9 C5 C4 H8 177.3 150.3
C4 C5 H9 H10 119.4 119.9
C6 C5 H9 H10 240.6 240.0
H10 C5 C4 H7 56.7 30.5
H10 C5 C4 H8 296.9 270.3
C4 C5 H10 H9 240.6 240.1
C6 C5 H10 H9 119.4 120.0
H11 C6 C5 H9 297.3 276.5
H11 C6 C5 H10 177.6 156.5
H11 C6 C7 H12 181.1 88.4
O3 C7 H12 C6 241.4 240.0
H12 C7 C6 H11 181.1 88.4
H12 C7 O3 C24 329.3 330.0
C11 C10 H14 C26 120.0 120.0
H14 C10 C26 H33 299.9 179.9
H14 C10 C26 H34 59.9 300.1
H14 C10 C26 H35 179.9 60.0
H14 C10 C11 H15 187.3 150.1
H14 C10 C9 H13 197.8 199.2
H15 C11 O5 C14 339.3 357.4
O5 C11 H15 C10 240.2 240.1
H15 C11 C10 C26 307.4 270.1
H15 C11 C10 H14 187.3 150.1
H16 C12 C11 H15 287.5 170.9
H16 C12 O6 C27 60.0 329.9
O9 C13 H17 C12 238.0 240.3
O9 C13 H17 H18 119.0 120.1
H17 C13 C12 H16 290.5 350.4
O9 C13 H18 C12 122.0 119.7
O9 C13 H18 H17 241.0 239.9
H18 C13 C12 H16 171.2 230.2
O5 C14 H19 H20 120.0 120.0
O5 C14 H19 H21 240.0 240.0
H20 C14 H19 H21 120.0 120.0
O5 C14 H20 H19 240.0 240.0
O5 C14 H20 H21 120.0 120.0
H19 C14 H20 H21 240.0 240.0
O5 C14 H21 H19 120.0 120.0
O5 C14 H21 H20 240.0 240.0
H19 C14 H21 H20 120.0 120.0
C16 C15 H22 H23 119.7 239.4
C16 C15 H23 H22 240.3 120.5
H25 C19 C20 C21 181.9 179.0
C2 C22 H27 H28 120.0 120.0
C2 C22 H27 H29 240.0 240.0
H28 C22 H27 H29 119.9 120.0
C2 C22 H28 H27 240.0 240.1
C2 C22 H28 H29 120.0 120.1
H27 C22 H28 H29 240.0 240.0
C2 C22 H29 H27 120.1 120.0
C2 C22 H29 H28 240.0 239.9
H27 C22 H29 H28 119.9 120.0
H31 C25 H30 H32 120.0 120.1
H30 C25 H31 H32 240.1 240.0
H30 C25 H32 H31 120.0 120.1
H33 C26 C10 H14 299.9 179.9
C10 C26 H33 H34 120.0 120.1
C10 C26 H33 H35 240.0 240.0
H34 C26 H33 H35 120.0 120.0
H34 C26 C10 H14 59.9 300.1
C10 C26 H34 H33 240.0 239.9
C10 C26 H34 H35 120.0 120.0
H33 C26 H34 H35 240.0 240.1
H35 C26 C10 H14 179.9 60.0
C10 C26 H35 H33 120.0 120.0
C10 C26 H35 H34 240.0 240.0
H33 C26 H35 H34 120.0 120.0
O6 C27 H36 H37 120.0 120.0
O6 C27 H36 H38 240.0 240.0
H37 C27 H36 H38 120.0 120.0
O6 C27 H37 H36 240.0 240.0
O6 C27 H37 H38 120.0 120.0
H36 C27 H37 H38 240.0 240.0
O6 C27 H38 H36 120.0 120.0
O6 C27 H38 H37 240.0 240.0
H36 C27 H38 H37 120.0 120.0
H40 C28 H39 H41 120.0 119.9
H39 C28 H40 H41 240.0 240.0
H39 C28 H41 H40 120.0 119.9