PDB Chemical Component VIO

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for VIO

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
N	CA	1.489	1.469
N	H	1.020	1.009
N	HN2	1.020	1.008
CA	C	1.573	1.507
CA	CB	1.530	1.531
CA	HA	1.116	1.090
C	O	1.253	1.208
C	OXT	1.256	1.343
OXT	HXT	0.950	0.966
CB	CG	1.534	1.531
CB	HB1	1.114	1.089
CB	HB2	1.115	1.090
CG	CD	1.501	1.530
CG	HG1	1.115	1.090
CG	HG2	1.114	1.090
CD	NE	1.497	1.465
CD	HD1	1.115	1.090
CD	HD2	1.115	1.090
NE	CZ	1.368	1.370
NE	HE	1.020	0.971
CZ	CH1	1.559	1.507
CZ	NH2	1.331	1.293
CH1	C1	1.514	1.530
CH1	HH11	1.114	1.090
CH1	HH12	1.116	1.090
NH2	HH21	1.019	0.970
NH2	HH22	1.020	0.970
C1	C2	1.325	1.530
C1	H11	1.115	1.090
C1	H12	1.114	1.091
C2	H21	1.115	1.090
C2	H22	1.115	1.089
C2	H23	1.116	1.090

Bond Angles for VIO

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
CA	N	H	109.6	106.6
CA	N	HN2	112.1	106.7
N	CA	C	109.7	109.5
N	CA	CB	106.6	109.5
N	CA	HA	112.1	109.5
H	N	HN2	112.2	106.7
C	CA	CB	111.8	109.4
C	CA	HA	106.9	109.5
CA	C	O	118.7	120.0
CA	C	OXT	121.2	120.0
CB	CA	HA	109.9	109.5
CA	CB	CG	117.3	109.4
CA	CB	HB1	109.4	109.5
CA	CB	HB2	109.4	109.5
O	C	OXT	120.1	120.0
C	OXT	HXT	121.2	120.0
CG	CB	HB1	109.4	109.5
CG	CB	HB2	109.4	109.4
CB	CG	CD	108.1	109.4
CB	CG	HG1	112.7	109.5
CB	CG	HG2	112.7	109.4
HB1	CB	HB2	100.8	109.5
CD	CG	HG1	112.8	109.5
CD	CG	HG2	112.7	109.5
CG	CD	NE	111.4	109.4
CG	CD	HD1	111.5	109.5
CG	CD	HD2	111.5	109.5
HG1	CG	HG2	97.7	109.5
NE	CD	HD1	111.5	109.5
NE	CD	HD2	111.5	109.5
CD	NE	CZ	131.6	120.0
CD	NE	HE	104.5	120.0
HD1	CD	HD2	98.9	109.5
CZ	NE	HE	104.6	120.0
NE	CZ	CH1	127.7	120.0
NE	CZ	NH2	114.4	120.0
CH1	CZ	NH2	117.9	120.0
CZ	CH1	C1	117.4	109.5
CZ	CH1	HH11	109.3	109.4
CZ	CH1	HH12	109.3	109.5
CZ	NH2	HH21	117.8	120.1
CZ	NH2	HH22	114.4	120.0
C1	CH1	HH11	109.4	109.5
C1	CH1	HH12	109.3	109.5
CH1	C1	C2	123.9	109.5
CH1	C1	H11	107.1	109.5
CH1	C1	H12	107.1	109.4
HH11	CH1	HH12	100.8	109.5
HH21	NH2	HH22	127.8	120.0
C2	C1	H11	107.1	109.5
C2	C1	H12	107.1	109.5
C1	C2	H21	124.0	109.5
C1	C2	H22	107.1	109.5
C1	C2	H23	107.1	109.4
H11	C1	H12	102.7	109.4
H21	C2	H22	107.1	109.5
H21	C2	H23	107.0	109.5
H22	C2	H23	102.6	109.5

Torsion Angles for VIO

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
H	N	CA	HN2	125.3	246.2
C	CA	N	CB	121.2	119.9
C	CA	N	HA	241.5	239.9
N	CA	C	O	179.9	340.1
N	CA	C	OXT	358.4	160.0
CB	CA	N	HA	120.3	120.0
N	CA	CB	CG	299.2	295.0
N	CA	CB	HB1	64.5	175.0
N	CA	CB	HB2	174.0	54.9
CA	N	H	HN2	234.7	113.8
H	N	CA	C	180.0	306.1
H	N	CA	CB	58.8	186.2
H	N	CA	HA	298.5	66.2
CA	N	HN2	H	123.9	246.3
HN2	N	CA	C	54.7	59.9
HN2	N	CA	CB	293.5	300.0
HN2	N	CA	HA	173.3	180.0
C	CA	N	H	180.0	306.1
C	CA	N	HN2	54.7	59.9
N	CA	C	CB	242.0	240.1
N	CA	C	HA	121.7	120.1
CB	CA	C	HA	239.7	240.0
C	CA	CB	CG	179.4	175.0
C	CA	CB	HB1	304.6	55.0
C	CA	CB	HB2	54.1	295.0
O	C	CA	OXT	181.5	180.0
CA	C	OXT	HXT	180.0	180.0
CB	CA	N	H	58.8	186.2
CB	CA	N	HN2	293.5	300.0
N	CA	CB	C	119.8	119.9
N	CA	CB	HA	238.3	240.0
C	CA	CB	HA	118.5	120.0
CB	CA	C	O	297.9	100.0
CB	CA	C	OXT	116.4	280.0
CG	CB	CA	HB1	234.7	120.0
CG	CB	CA	HB2	125.2	240.1
CA	CB	CG	CD	171.3	180.0
CA	CB	CG	HG1	296.5	60.0
CA	CB	CG	HG2	46.0	300.0
HB1	CB	CA	HB2	250.5	120.0
HA	CA	N	H	298.5	66.2
HA	CA	N	HN2	173.3	180.0
N	CA	HA	C	239.8	240.0
N	CA	HA	CB	118.4	120.0
C	CA	HA	CB	238.5	240.0
HA	CA	C	O	58.2	220.0
HA	CA	C	OXT	236.7	40.0
HA	CA	CB	CG	60.9	55.0
HA	CA	CB	HB1	186.1	295.0
HA	CA	CB	HB2	295.6	175.0
O	C	CA	CB	297.9	100.0
O	C	CA	HA	58.2	220.0
CA	C	O	OXT	178.5	180.0
O	C	OXT	HXT	358.4	360.0
OXT	C	CA	CB	116.4	280.0
OXT	C	CA	HA	236.7	40.0
CA	C	OXT	O	181.6	180.0
CG	CB	CA	HA	60.9	55.0
CA	CB	CG	HB1	125.3	240.0
CA	CB	CG	HB2	234.8	120.0
HB1	CB	CG	HB2	109.5	240.0
CD	CG	CB	HG1	234.7	120.0
CD	CG	CB	HG2	125.3	240.0
CB	CG	CD	NE	300.8	180.0
CB	CG	CD	HD1	66.0	60.0
CB	CG	CD	HD2	175.5	300.0
HG1	CG	CB	HG2	250.6	120.1
HB1	CB	CA	HA	186.1	295.0
CA	CB	HB1	CG	230.3	120.0
CA	CB	HB1	HB2	115.2	240.0
CG	CB	HB1	HB2	244.9	120.0
HB1	CB	CG	CD	46.0	300.0
HB1	CB	CG	HG1	171.3	180.0
HB1	CB	CG	HG2	280.7	60.0
HB2	CB	CA	HA	295.6	175.0
CA	CB	HB2	CG	129.7	240.1
CA	CB	HB2	HB1	244.8	120.0
CG	CB	HB2	HB1	115.1	240.0
HB2	CB	CG	CD	296.5	60.0
HB2	CB	CG	HG1	61.8	300.1
HB2	CB	CG	HG2	171.2	180.0
CD	CG	CB	HB1	46.0	300.0
CD	CG	CB	HB2	296.5	60.0
CB	CG	CD	HG1	125.2	240.0
CB	CG	CD	HG2	234.7	119.9
HG1	CG	CD	HG2	109.5	239.9
NE	CD	CG	HD1	234.8	120.0
NE	CD	CG	HD2	125.3	240.0
CG	CD	NE	CZ	172.9	180.0
CG	CD	NE	HE	47.6	360.0
HD1	CD	CG	HD2	250.5	120.0
HG1	CG	CB	HB1	171.3	180.0
HG1	CG	CB	HB2	61.8	300.1
CB	CG	HG1	CD	237.3	119.9
CB	CG	HG1	HG2	118.6	240.0
CD	CG	HG1	HG2	241.3	120.1
HG1	CG	CD	NE	175.6	300.0
HG1	CG	CD	HD1	300.8	180.0
HG1	CG	CD	HD2	50.3	59.9
HG2	CG	CB	HB1	280.7	60.0
HG2	CG	CB	HB2	171.2	180.0
CB	CG	HG2	CD	122.7	240.1
CB	CG	HG2	HG1	241.4	120.0
CD	CG	HG2	HG1	118.7	240.0
HG2	CG	CD	NE	66.1	60.0
HG2	CG	CD	HD1	191.3	300.0
HG2	CG	CD	HD2	300.8	180.0
NE	CD	CG	HG1	175.6	300.0
NE	CD	CG	HG2	66.1	60.0
CG	CD	NE	HD1	125.2	240.0
CG	CD	NE	HD2	234.7	120.0
HD1	CD	NE	HD2	109.5	240.0
CZ	NE	CD	HE	125.2	180.0
CD	NE	CZ	CH1	0.1	180.0
CD	NE	CZ	NH2	179.4	0.0
HD1	CD	CG	HG1	300.8	180.0
HD1	CD	CG	HG2	191.3	300.0
CG	CD	HD1	NE	234.8	120.0
CG	CD	HD1	HD2	117.4	240.0
NE	CD	HD1	HD2	242.6	120.0
HD1	CD	NE	CZ	47.7	300.0
HD1	CD	NE	HE	282.4	120.0
HD2	CD	CG	HG1	50.3	59.9
HD2	CD	CG	HG2	300.8	180.0
CG	CD	HD2	NE	125.2	240.0
CG	CD	HD2	HD1	242.6	120.0
NE	CD	HD2	HD1	117.4	240.0
HD2	CD	NE	CZ	298.2	60.0
HD2	CD	NE	HE	172.9	240.0
CZ	NE	CD	HD1	47.7	300.0
CZ	NE	CD	HD2	298.2	60.0
CD	NE	CZ	HE	234.8	180.0
CH1	CZ	NE	NH2	180.7	179.9
NE	CZ	CH1	C1	39.3	270.1
NE	CZ	CH1	HH11	164.6	150.0
NE	CZ	CH1	HH12	274.1	30.0
NE	CZ	NH2	HH21	0.6	0.0
NE	CZ	NH2	HH22	180.0	180.0
HE	NE	CD	HD1	282.4	120.0
HE	NE	CD	HD2	172.9	240.0
CD	NE	HE	CZ	140.9	180.0
HE	NE	CZ	CH1	125.3	360.0
HE	NE	CZ	NH2	304.6	180.0
CH1	CZ	NE	HE	125.3	360.0
NE	CZ	CH1	NH2	179.3	180.1
CH1	CZ	NH2	HH21	180.0	180.1
CH1	CZ	NH2	HH22	359.4	0.0
C1	CH1	CZ	HH11	234.7	120.0
C1	CH1	CZ	HH12	125.2	240.0
CZ	CH1	C1	C2	235.2	180.0
CZ	CH1	C1	H11	0.4	60.0
CZ	CH1	C1	H12	110.0	300.0
HH11	CH1	CZ	HH12	250.5	120.0
NH2	CZ	NE	HE	304.6	180.0
NE	CZ	NH2	CH1	180.6	179.9
NH2	CZ	CH1	C1	220.0	90.0
NH2	CZ	CH1	HH11	345.3	330.0
NH2	CZ	CH1	HH12	94.8	210.0
HH21	NH2	CZ	HH22	180.6	180.0
C1	CH1	CZ	NH2	220.0	90.0
CZ	CH1	C1	HH11	125.3	240.0
CZ	CH1	C1	HH12	234.8	120.0
HH11	CH1	C1	HH12	109.5	240.0
C2	C1	CH1	H11	234.8	120.1
C2	C1	CH1	H12	125.2	240.0
CH1	C1	C2	H21	180.0	60.0
CH1	C1	C2	H22	305.3	180.0
CH1	C1	C2	H23	54.7	300.0
H11	C1	CH1	H12	250.5	120.0
HH11	CH1	CZ	NH2	345.3	330.0
CZ	CH1	HH11	C1	230.2	120.0
CZ	CH1	HH11	HH12	115.1	240.0
C1	CH1	HH11	HH12	244.9	120.0
HH11	CH1	C1	C2	109.9	300.0
HH11	CH1	C1	H11	235.2	180.0
HH11	CH1	C1	H12	344.7	60.0
HH12	CH1	CZ	NH2	94.8	210.0
CZ	CH1	HH12	C1	129.8	240.0
CZ	CH1	HH12	HH11	244.9	120.0
C1	CH1	HH12	HH11	115.1	240.0
HH12	CH1	C1	C2	0.4	60.0
HH12	CH1	C1	H11	125.7	300.0
HH12	CH1	C1	H12	235.2	180.0
CZ	NH2	HH21	HH22	179.3	180.0
CZ	NH2	HH22	HH21	180.7	180.0
C2	C1	CH1	HH11	109.9	300.0
C2	C1	CH1	HH12	0.4	60.0
CH1	C1	C2	H11	125.2	239.9
CH1	C1	C2	H12	234.8	120.0
H11	C1	C2	H12	109.5	240.0
H21	C2	C1	H22	234.7	240.0
H21	C2	C1	H23	125.3	120.0
H22	C2	C1	H23	250.6	240.0
H11	C1	CH1	HH11	235.2	180.0
H11	C1	CH1	HH12	125.7	300.0
CH1	C1	H11	C2	225.2	120.0
CH1	C1	H11	H12	112.6	240.0
C2	C1	H11	H12	247.4	120.0
H11	C1	C2	H21	54.8	180.0
H11	C1	C2	H22	180.1	300.0
H11	C1	C2	H23	289.5	60.1
H12	C1	CH1	HH11	344.7	60.0
H12	C1	CH1	HH12	235.2	180.0
CH1	C1	H12	C2	134.9	240.0
CH1	C1	H12	H11	247.4	120.0
C2	C1	H12	H11	112.6	240.0
H12	C1	C2	H21	305.2	300.0
H12	C1	C2	H22	70.5	60.0
H12	C1	C2	H23	180.0	180.0
H21	C2	C1	H11	54.8	180.0
H21	C2	C1	H12	305.2	300.0
C1	C2	H21	H22	125.3	120.0
C1	C2	H21	H23	234.7	240.0
H22	C2	H21	H23	109.4	120.0
H22	C2	C1	H11	180.1	300.0
H22	C2	C1	H12	70.5	60.0
C1	C2	H22	H21	225.0	240.0
C1	C2	H22	H23	112.6	120.0
H21	C2	H22	H23	247.5	240.0
H23	C2	C1	H11	289.5	60.1
H23	C2	C1	H12	180.0	180.0
C1	C2	H23	H21	134.9	120.0
C1	C2	H23	H22	247.4	240.0
H21	C2	H23	H22	112.5	120.0