PDB Chemical Component VIB

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for VIB

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
CM2	C2A	1.497	1.507
CM2	HM21	1.115	1.090
CM2	HM22	1.115	1.090
CM2	HM23	1.116	1.090
N4A	C4A	1.410	1.386
N4A	H4A1	1.020	0.970
N4A	H4A2	1.019	0.970
CM4	C4	1.523	1.507
CM4	HM41	1.114	1.090
CM4	HM42	1.116	1.090
CM4	HM43	1.116	1.090
O1	C7	1.421	1.429
O1	HO1	0.950	0.967
C7	C6	1.531	1.530
C7	HC71	1.115	1.090
C7	HC72	1.114	1.090
C6	C5	1.512	1.507
C6	HC61	1.115	1.090
C6	HC62	1.116	1.090
C2	S1	1.778	1.737
C2	N3	1.260	1.313
C2	HC2	1.102	1.081
S1	C5	1.799	1.788
C5	C4	1.357	1.357
C4	N3	1.285	1.317
N3	C7A	1.479	1.465
C7A	C5A	1.521	1.507
C7A	H7A1	1.115	1.089
C7A	H7A2	1.115	1.090
C4A	N3A	1.405	1.329
C4A	C5A	1.423	1.396
N3A	C2A	1.397	1.318
C2A	N1A	1.405	1.317
N1A	C6A	1.409	1.325
C6A	C5A	1.402	1.381
C6A	H6AC	1.103	1.080

Bond Angles for VIB

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2A	CM2	HM21	120.3	109.5
C2A	CM2	HM22	108.3	109.5
C2A	CM2	HM23	108.3	109.5
CM2	C2A	N3A	120.3	119.1
CM2	C2A	N1A	120.2	119.1
HM21	CM2	HM22	108.4	109.5
HM21	CM2	HM23	108.3	109.5
HM22	CM2	HM23	101.6	109.4
C4A	N4A	H4A1	119.0	120.0
C4A	N4A	H4A2	108.8	120.0
N4A	C4A	N3A	119.0	120.5
N4A	C4A	C5A	121.0	120.5
H4A1	N4A	H4A2	108.8	120.1
C4	CM4	HM41	123.0	109.5
C4	CM4	HM42	107.4	109.5
C4	CM4	HM43	107.3	109.5
CM4	C4	C5	123.0	120.8
CM4	C4	N3	123.9	120.7
HM41	CM4	HM42	107.5	109.5
HM41	CM4	HM43	107.4	109.5
HM42	CM4	HM43	102.3	109.4
C7	O1	HO1	107.9	106.8
O1	C7	C6	107.9	109.5
O1	C7	HC71	112.8	109.5
O1	C7	HC72	112.8	109.5
C6	C7	HC71	112.8	109.5
C6	C7	HC72	112.8	109.5
C7	C6	C5	109.5	109.5
C7	C6	HC61	112.2	109.5
C7	C6	HC62	112.1	109.5
HC71	C7	HC72	97.7	109.5
C5	C6	HC61	112.2	109.5
C5	C6	HC62	112.2	109.5
C6	C5	S1	122.9	129.7
C6	C5	C4	125.1	129.7
HC61	C6	HC62	98.2	109.5
S1	C2	N3	115.1	102.2
S1	C2	HC2	137.4	128.9
C2	S1	C5	83.5	97.4
N3	C2	HC2	107.4	128.9
C2	N3	C4	116.4	121.4
C2	N3	C7A	120.1	119.3
S1	C5	C4	111.9	100.6
C5	C4	N3	113.1	118.4
C4	N3	C7A	123.5	119.3
N3	C7A	C5A	123.1	109.5
N3	C7A	H7A1	107.4	109.4
N3	C7A	H7A2	107.4	109.5
C5A	C7A	H7A1	107.4	109.5
C5A	C7A	H7A2	107.4	109.5
C7A	C5A	C4A	121.5	120.8
C7A	C5A	C6A	119.4	120.8
H7A1	C7A	H7A2	102.4	109.5
N3A	C4A	C5A	120.0	118.9
C4A	N3A	C2A	120.7	120.7
C4A	C5A	C6A	119.0	118.3
N3A	C2A	N1A	119.4	121.8
C2A	N1A	C6A	120.5	121.0
N1A	C6A	C5A	120.4	119.2
N1A	C6A	H6AC	120.1	120.4
C5A	C6A	H6AC	119.6	120.4

Torsion Angles for VIB

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
HM21	CM2	C2A	HM22	234.7	240.0
HM21	CM2	C2A	HM23	125.2	120.0
HM22	CM2	C2A	HM23	250.6	240.0
C4A	N3A	C2A	CM2	180.2	179.7
N3A	C2A	CM2	N1A	180.1	179.7
CM2	C2A	N1A	C6A	179.8	180.0
C2A	CM2	HM21	HM22	125.3	120.0
C2A	CM2	HM21	HM23	234.8	240.0
HM21	CM2	C2A	N3A	180.0	269.7
HM21	CM2	C2A	N1A	359.9	90.0
HM22	CM2	HM21	HM23	109.5	120.0
C2A	CM2	HM22	HM21	227.9	240.0
C2A	CM2	HM22	HM23	113.9	120.0
HM22	CM2	C2A	N3A	305.3	29.7
HM22	CM2	C2A	N1A	125.3	210.0
HM21	CM2	HM22	HM23	246.0	240.0
C2A	CM2	HM23	HM21	132.0	120.0
C2A	CM2	HM23	HM22	246.1	240.0
HM23	CM2	C2A	N3A	54.7	149.7
HM23	CM2	C2A	N1A	234.7	330.0
HM21	CM2	HM23	HM22	114.0	120.0
H4A1	N4A	C4A	H4A2	125.3	179.8
C7A	C5A	C4A	N4A	359.8	0.0
N3A	C4A	N4A	C5A	179.8	180.3
N4A	C4A	N3A	C2A	179.9	180.2
N4A	C4A	C5A	C6A	180.1	180.1
C4A	N4A	H4A1	H4A2	234.7	180.2
H4A1	N4A	C4A	N3A	180.0	180.2
H4A1	N4A	C4A	C5A	0.3	359.9
C4A	N4A	H4A2	H4A1	131.1	179.8
H4A2	N4A	C4A	N3A	54.7	0.4
H4A2	N4A	C4A	C5A	235.0	180.1
HM41	CM4	C4	HM42	234.7	239.9
HM41	CM4	C4	HM43	125.2	120.0
HM42	CM4	C4	HM43	250.6	240.1
C6	C5	C4	CM4	359.7	359.7
C2	N3	C4	CM4	180.1	179.9
S1	C5	C4	CM4	180.0	180.0
C5	C4	CM4	N3	179.8	180.5
CM4	C4	N3	C7A	0.2	0.2
C4	CM4	HM41	HM42	125.3	120.0
C4	CM4	HM41	HM43	234.8	240.0
HM41	CM4	C4	C5	180.0	95.5
HM41	CM4	C4	N3	0.1	275.1
HM42	CM4	HM41	HM43	109.5	120.0
C4	CM4	HM42	HM41	225.8	239.9
C4	CM4	HM42	HM43	112.9	119.9
HM42	CM4	C4	C5	305.3	215.6
HM42	CM4	C4	N3	125.5	35.1
HM41	CM4	HM42	HM43	247.0	240.0
C4	CM4	HM43	HM41	134.1	120.0
C4	CM4	HM43	HM42	247.1	240.1
HM43	CM4	C4	C5	54.7	335.5
HM43	CM4	C4	N3	234.9	155.1
HM41	CM4	HM43	HM42	113.0	120.0
C6	C7	O1	HC71	234.8	120.0
C6	C7	O1	HC72	125.3	240.0
O1	C7	C6	C5	188.1	180.0
O1	C7	C6	HC61	313.5	60.0
O1	C7	C6	HC62	62.9	300.0
HC71	C7	O1	HC72	250.5	120.0
HO1	O1	C7	C6	180.1	180.0
HO1	O1	C7	HC71	305.3	60.0
HO1	O1	C7	HC72	54.8	300.0
C6	C7	O1	HO1	180.1	180.0
O1	C7	C6	HC71	125.2	240.0
O1	C7	C6	HC72	234.7	120.0
HC71	C7	C6	HC72	109.5	240.0
C5	C6	C7	HC61	234.7	120.0
C5	C6	C7	HC62	125.3	240.0
C7	C6	C5	S1	288.4	270.0
C7	C6	C5	C4	108.6	90.3
HC61	C6	C7	HC62	250.6	120.0
HC71	C7	O1	HO1	305.3	60.0
O1	C7	HC71	C6	237.5	120.0
O1	C7	HC71	HC72	118.7	240.0
C6	C7	HC71	HC72	241.3	120.0
HC71	C7	C6	C5	62.9	300.0
HC71	C7	C6	HC61	188.3	180.0
HC71	C7	C6	HC62	297.7	60.0
HC72	C7	O1	HO1	54.8	300.0
O1	C7	HC72	C6	122.6	240.0
O1	C7	HC72	HC71	241.3	120.0
C6	C7	HC72	HC71	118.7	240.0
HC72	C7	C6	C5	313.4	60.0
HC72	C7	C6	HC61	78.7	300.0
HC72	C7	C6	HC62	188.1	180.0
CM4	C4	C5	C6	359.7	359.7
C5	C6	C7	HC71	62.9	300.0
C5	C6	C7	HC72	313.4	60.0
C7	C6	C5	HC61	125.3	240.0
C7	C6	C5	HC62	234.8	120.0
HC61	C6	C5	HC62	109.5	240.0
C2	S1	C5	C6	180.3	180.0
S1	C5	C6	C4	179.7	179.7
C6	C5	C4	N3	179.6	180.2
HC61	C6	C7	HC71	188.3	180.0
HC61	C6	C7	HC72	78.7	300.0
C7	C6	HC61	C5	236.2	120.0
C7	C6	HC61	HC62	118.0	240.0
C5	C6	HC61	HC62	241.8	120.0
HC61	C6	C5	S1	163.1	29.9
HC61	C6	C5	C4	343.4	210.3
HC62	C6	C7	HC71	297.7	60.0
HC62	C6	C7	HC72	188.1	180.0
C7	C6	HC62	C5	123.8	240.0
C7	C6	HC62	HC61	241.9	120.0
C5	C6	HC62	HC61	118.2	240.0
HC62	C6	C5	S1	53.6	150.0
HC62	C6	C5	C4	233.9	330.3
C6	C5	S1	C2	180.3	180.0
N3	C2	S1	HC2	180.0	179.9
S1	C2	N3	C4	359.8	0.3
S1	C2	N3	C7A	179.6	180.0
C2	S1	C5	C4	0.1	359.8
CM4	C4	N3	C2	180.1	179.9
S1	C2	N3	HC2	180.0	180.1
N3	C2	S1	C5	0.1	360.0
C5	C4	N3	C2	0.3	359.4
C4	N3	C2	C7A	180.1	180.3
C2	N3	C7A	C5A	350.6	266.0
C2	N3	C7A	H7A1	115.9	146.0
C2	N3	C7A	H7A2	225.4	26.0
S1	C2	HC2	N3	180.0	179.9
HC2	C2	S1	C5	180.1	180.1
HC2	C2	N3	C4	179.8	180.2
HC2	C2	N3	C7A	359.7	359.9
CM4	C4	C5	S1	180.0	180.0
S1	C5	C6	HC61	163.1	29.9
S1	C5	C6	HC62	53.6	150.0
C6	C5	S1	C4	180.2	180.3
C5	S1	C2	N3	0.1	360.0
C5	S1	C2	HC2	180.1	180.1
S1	C5	C4	N3	359.8	0.5
C5	C4	CM4	HM41	180.0	95.5
C5	C4	CM4	HM42	305.3	215.6
C5	C4	CM4	HM43	54.7	335.5
CM4	C4	C5	N3	180.2	179.5
C4	C5	C6	HC61	343.4	210.3
C4	C5	C6	HC62	233.9	330.3
C6	C5	C4	S1	179.8	179.7
C2	N3	C4	C5	0.3	359.4
C5	C4	N3	C7A	180.4	179.7
N3	C4	CM4	HM41	0.1	275.1
N3	C4	CM4	HM42	125.5	35.1
N3	C4	CM4	HM43	234.9	155.1
CM4	C4	N3	C5	179.8	180.5
C4	N3	C2	HC2	179.8	180.2
C2	N3	C4	C7A	179.9	179.7
C4	N3	C7A	C5A	170.5	85.7
C4	N3	C7A	H7A1	295.7	325.7
C4	N3	C7A	H7A2	45.2	205.7
C7A	N3	C2	HC2	359.7	359.9
C2	N3	C7A	C4	180.1	180.3
C5A	C7A	N3	H7A1	234.8	120.0
C5A	C7A	N3	H7A2	125.2	240.0
N3	C7A	C5A	C4A	283.9	85.0
N3	C7A	C5A	C6A	103.6	265.0
H7A1	C7A	N3	H7A2	250.5	120.0
N4A	C4A	C5A	C7A	359.8	0.0
N3	C7A	C5A	H7A1	125.2	240.0
N3	C7A	C5A	H7A2	234.8	120.0
H7A1	C7A	C5A	H7A2	109.5	240.0
N3A	C4A	C5A	C7A	180.0	179.7
C4A	C5A	C7A	C6A	180.3	180.1
N1A	C6A	C5A	C7A	180.0	180.0
C7A	C5A	C6A	H6AC	360.0	0.1
N3	C7A	H7A1	C5A	225.8	120.0
N3	C7A	H7A1	H7A2	112.9	240.0
C5A	C7A	H7A1	H7A2	247.1	120.0
H7A1	C7A	C5A	C4A	158.7	205.0
H7A1	C7A	C5A	C6A	338.4	25.0
N3	C7A	H7A2	C5A	134.2	240.0
N3	C7A	H7A2	H7A1	247.1	120.0
C5A	C7A	H7A2	H7A1	112.9	239.9
H7A2	C7A	C5A	C4A	49.1	325.1
H7A2	C7A	C5A	C6A	228.9	145.0
CM2	C2A	N3A	C4A	180.2	179.7
N3A	C4A	N4A	H4A1	180.0	180.2
N3A	C4A	N4A	H4A2	54.7	0.4
N4A	C4A	N3A	C5A	180.2	179.7
C7A	C5A	C4A	N3A	180.0	179.7
N3A	C4A	C5A	C6A	0.3	359.7
C4A	N3A	C2A	N1A	0.3	359.4
C5A	C4A	N4A	H4A1	0.3	359.9
C5A	C4A	N4A	H4A2	235.0	180.1
N4A	C4A	C5A	N3A	179.8	180.3
C4A	C5A	C7A	H7A1	158.7	205.0
C4A	C5A	C7A	H7A2	49.1	325.1
C7A	C5A	C4A	C6A	179.7	179.9
C5A	C4A	N3A	C2A	359.7	0.6
N1A	C6A	C5A	C4A	359.7	360.0
C4A	C5A	C6A	H6AC	179.7	180.0
N3A	C2A	CM2	HM21	180.0	269.7
N3A	C2A	CM2	HM22	305.3	29.7
N3A	C2A	CM2	HM23	54.7	149.7
CM2	C2A	N3A	N1A	179.9	180.3
C2A	N3A	C4A	C5A	359.7	0.6
N3A	C2A	N1A	C6A	359.8	0.3
N1A	C2A	CM2	HM21	359.9	90.0
N1A	C2A	CM2	HM22	125.3	210.0
N1A	C2A	CM2	HM23	234.7	330.0
CM2	C2A	N1A	N3A	180.1	179.7
C2A	N1A	C6A	C5A	0.2	0.0
C2A	N1A	C6A	H6AC	180.3	180.0
C7A	C5A	C6A	N1A	180.0	180.0
C4A	C5A	C6A	N1A	359.7	360.0
C5A	C6A	N1A	H6AC	180.0	180.1
C6A	C5A	C7A	H7A1	338.4	25.0
C6A	C5A	C7A	H7A2	228.9	145.0
C7A	C5A	C6A	C4A	180.3	180.1
N1A	C6A	C5A	H6AC	180.0	179.9
N1A	C6A	H6AC	C5A	180.0	180.1