PDB Chemical Component VHI

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for VHI

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C3 1.406 1.340
N1 C5 1.450 1.471
N1 C17 1.392 1.347
S1 C2 1.740 1.838
S1 C6 1.809 1.839
C2 C4 1.480 1.541
C2 C7 1.576 1.530
N2 C3 1.310 1.341
N2 C4 1.531 1.470
C3 O3 1.225 1.215
C4 C5 1.570 1.534
C5 C6 1.494 1.542
C7 C8 1.523 1.529
C8 C9 1.576 1.530
C9 C10 1.540 1.530
C10 C11 1.497 1.507
C11 O11 1.295 1.209
C11 O12 1.297 1.342
C17 O18 1.452 1.346
C17 O19 1.285 1.214
O18 C20 1.486 1.451
C20 C21 1.516 1.506
C21 C22 1.426 1.382
C21 C26 1.443 1.383
C22 C23 1.397 1.382
C23 C24 1.416 1.383
C24 C25 1.431 1.382
C25 C26 1.426 1.383
C2 H2 1.100 1.090
N2 HN2 1.000 0.970
C4 H4 1.100 1.091
C5 H5 1.100 1.090
C6 H6 1.100 1.090
C6 H6A 1.100 1.090
C7 H7 1.100 1.090
C7 H7A 1.101 1.090
C8 H8 1.100 1.090
C8 H8A 1.100 1.089
C9 H9 1.100 1.090
C9 H9A 1.100 1.090
C10 H10 1.101 1.090
C10 H10A 1.100 1.090
O12 HO12 0.950 0.968
C20 H20 1.100 1.091
C20 H20A 1.100 1.090
C22 H22 1.080 1.081
C23 H23 1.080 1.079
C24 H24 1.080 1.079
C25 H25 1.080 1.080
C26 H26 1.080 1.080

Bond Angles for VHI

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C3 N1 C5 113.7 109.0
C3 N1 C17 127.2 125.5
N1 C3 N2 108.3 113.9
N1 C3 O3 130.5 123.1
C5 N1 C17 115.8 125.5
N1 C5 C4 100.8 104.0
N1 C5 C6 113.3 109.2
N1 C5 H5 114.2 110.2
N1 C17 O18 124.8 120.0
N1 C17 O19 124.7 120.0
C2 S1 C6 92.5 94.8
S1 C2 C4 105.0 102.7
S1 C2 C7 114.8 110.8
S1 C2 H2 108.9 110.8
S1 C6 C5 102.2 102.7
S1 C6 H6 112.0 110.8
S1 C6 H6A 111.9 110.8
C4 C2 C7 109.1 110.7
C2 C4 N2 118.1 109.2
C2 C4 C5 104.7 112.4
C4 C2 H2 114.6 110.8
C2 C4 H4 105.1 110.2
C2 C7 C8 109.2 109.5
C7 C2 H2 104.8 110.8
C2 C7 H7 109.5 109.5
C2 C7 H7A 109.5 109.5
C3 N2 C4 112.0 109.1
N2 C3 O3 120.6 123.0
C3 N2 HN2 124.0 125.4
N2 C4 C5 102.8 104.0
C4 N2 HN2 124.0 125.5
N2 C4 H4 107.0 110.2
C4 C5 C6 113.3 112.3
C5 C4 H4 119.9 110.5
C4 C5 H5 114.1 110.3
C6 C5 H5 101.8 110.5
C5 C6 H6 111.9 110.7
C5 C6 H6A 112.0 110.7
C7 C8 C9 110.5 109.5
C8 C7 H7 109.5 109.5
C8 C7 H7A 109.6 109.5
C7 C8 H8 109.1 109.4
C7 C8 H8A 109.2 109.5
C8 C9 C10 111.6 109.5
C9 C8 H8 109.1 109.4
C9 C8 H8A 109.1 109.5
C8 C9 H9 108.8 109.5
C8 C9 H9A 108.8 109.5
C9 C10 C11 111.0 109.5
C10 C9 H9 108.7 109.5
C10 C9 H9A 108.8 109.5
C9 C10 H10 108.9 109.5
C9 C10 H10A 109.0 109.5
C10 C11 O11 120.6 120.0
C10 C11 O12 118.9 120.0
C11 C10 H10 109.0 109.5
C11 C10 H10A 109.0 109.4
O11 C11 O12 120.6 120.0
C11 O12 HO12 109.5 117.0
O18 C17 O19 110.2 119.9
C17 O18 C20 120.4 117.0
O18 C20 C21 108.5 109.5
O18 C20 H20 109.8 109.5
O18 C20 H20A 109.8 109.5
C20 C21 C22 119.0 120.0
C20 C21 C26 121.7 120.0
C21 C20 H20 109.8 109.5
C21 C20 H20A 109.8 109.5
C22 C21 C26 119.2 119.9
C21 C22 C23 120.5 120.1
C21 C22 H22 119.8 120.0
C21 C26 C25 120.0 120.0
C21 C26 H26 120.0 120.0
C22 C23 C24 120.8 120.0
C23 C22 H22 119.8 120.0
C22 C23 H23 119.6 120.0
C23 C24 C25 120.3 120.0
C24 C23 H23 119.6 120.0
C23 C24 H24 119.9 120.0
C24 C25 C26 119.2 120.0
C25 C24 H24 119.9 120.0
C24 C25 H25 120.4 120.0
C26 C25 H25 120.4 120.0
C25 C26 H26 120.0 120.0
H6 C6 H6A 106.9 110.8
H7 C7 H7A 109.4 109.4
H8 C8 H8A 109.8 109.5
H9 C9 H9A 110.2 109.4
H10 C10 H10A 109.9 109.5
H20 C20 H20A 109.2 109.4

Torsion Angles for VHI

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C5 N1 C3 C17 201.7 180.2
C3 N1 C5 C4 16.2 0.0
C3 N1 C5 C6 254.8 239.9
C3 N1 C5 H5 138.9 118.2
C3 N1 C17 O18 8.8 360.0
C3 N1 C17 O19 195.4 180.0
N1 C3 N2 C4 4.4 0.0
N2 C3 N1 O3 171.5 180.1
N1 C3 N2 HN2 184.3 180.0
C3 N1 C5 C17 160.9 179.8
C5 N1 C3 N2 346.2 360.0
C5 N1 C3 O3 174.6 179.9
C5 N1 C17 O18 166.7 179.7
C5 N1 C17 O19 353.3 359.8
S1 C6 C5 N1 98.0 90.3
C2 C4 C5 N1 223.9 241.9
N2 C4 C5 N1 347.9 0.0
C4 C5 N1 C6 121.4 120.1
N1 C5 C4 H4 106.4 118.3
C4 C5 N1 H5 237.3 241.8
C6 C5 N1 H5 115.9 121.6
N1 C5 C6 H6 338.0 332.0
N1 C5 C6 H6A 218.0 208.6
C3 N1 C17 C5 202.1 180.3
C17 N1 C3 N2 144.5 179.8
C17 N1 C3 O3 333.0 359.7
C17 N1 C5 C4 215.2 180.2
C17 N1 C5 C6 93.9 60.1
C17 N1 C5 H5 337.9 298.5
O18 C17 N1 O19 173.4 180.0
N1 C17 O18 C20 164.9 180.0
C2 S1 C6 C5 35.0 34.7
C2 S1 C6 H6 155.0 153.0
C2 S1 C6 H6A 275.0 276.4
C4 C2 S1 C7 119.8 118.3
S1 C2 C4 N2 286.6 269.7
S1 C2 C4 C5 40.1 24.7
C4 C2 S1 H2 236.8 241.7
S1 C2 C4 H4 167.4 148.5
S1 C2 C7 C8 274.3 293.6
C7 C2 S1 H2 117.1 123.4
S1 C2 C7 H7 34.3 53.6
S1 C2 C7 H7A 154.3 173.5
N1 C5 C6 S1 98.0 90.3
C6 S1 C2 C4 314.1 325.3
C6 S1 C2 C7 194.4 207.0
C6 S1 C2 H2 77.3 83.6
C4 C5 C6 S1 343.9 335.4
S1 C6 C5 H5 221.0 211.7
C5 C6 S1 H6 240.0 241.7
C5 C6 S1 H6A 120.0 118.3
H6 C6 S1 H6A 240.0 236.5
N1 C5 C4 C2 223.9 241.9
C4 C2 S1 C6 314.1 325.3
S1 C2 C4 C7 236.5 241.7
S1 C2 C4 H2 119.4 118.4
C4 C2 C7 C8 156.8 180.3
C7 C2 C4 H2 242.9 236.7
C4 C2 C7 H7 276.8 300.3
C4 C2 C7 H7A 36.8 60.2
C3 N2 C4 C2 119.9 120.2
N2 C4 C2 C5 246.5 245.1
C2 C4 N2 HN2 300.0 300.2
N2 C4 C2 H4 119.2 121.3
C2 C4 C5 C6 345.3 359.9
C5 C4 C2 H4 232.7 236.2
C2 C4 C5 H5 101.2 123.8
C7 C2 S1 C6 194.4 207.0
S1 C2 C7 C4 117.5 113.3
S1 C2 C7 H2 240.6 236.6
C7 C2 C4 N2 50.1 28.0
C7 C2 C4 C5 163.6 143.0
C4 C2 C7 H2 123.2 123.3
C7 C2 C4 H4 290.9 266.8
C2 C7 C8 C9 174.6 180.0
C8 C7 C2 H7 240.0 240.0
C8 C7 C2 H7A 120.0 120.1
C2 C7 C8 H8 294.6 300.0
C2 C7 C8 H8A 54.6 60.0
H7 C7 C2 H7A 240.0 240.1
N2 C3 N1 C5 346.2 360.0
N2 C3 N1 C17 144.5 179.8
N1 C3 N2 O3 187.5 179.9
C2 C4 N2 C3 119.9 120.2
C3 N2 C4 C5 5.3 360.0
C4 N2 C3 HN2 180.0 180.0
C3 N2 C4 H4 238.2 241.5
N1 C5 C4 N2 347.9 0.0
N2 C4 C2 C7 50.1 28.0
C2 C4 N2 C5 114.6 120.2
N2 C4 C2 H2 167.2 151.4
C2 C4 N2 H4 241.8 238.7
C4 N2 C3 O3 176.9 180.1
C3 N2 C4 HN2 180.0 180.0
N2 C4 C5 C6 109.2 118.0
C5 C4 N2 H4 127.2 118.5
N2 C4 C5 H5 225.1 241.8
O3 C3 N1 C5 174.6 179.9
O3 C3 N1 C17 333.0 359.7
N1 C3 O3 N2 170.6 180.1
O3 C3 N2 C4 176.9 180.1
O3 C3 N2 HN2 356.8 0.1
C4 C5 N1 C17 215.2 180.2
N1 C5 C4 C6 238.7 242.0
N1 C5 C4 H5 122.8 118.2
S1 C6 C5 C4 343.9 335.4
C5 C4 C2 C7 163.6 143.0
C2 C4 C5 N2 236.0 241.9
C5 C4 C2 H2 280.7 266.3
C2 C4 C5 H4 117.6 123.6
C5 C4 N2 HN2 185.4 180.0
N2 C4 C5 H4 241.5 241.7
C6 C5 C4 H5 244.1 236.2
C4 C5 C6 H6 223.9 217.1
C4 C5 C6 H6A 103.9 93.8
C6 C5 N1 C17 93.9 60.1
N1 C5 C6 C4 114.0 114.9
N1 C5 C6 H5 237.0 238.6
S1 C6 C5 H6 120.0 118.3
S1 C6 C5 H6A 240.0 241.7
C6 C5 C4 H4 227.7 236.3
C4 C5 C6 H5 122.9 123.7
H6 C6 C5 H6A 120.0 123.4
C8 C7 C2 H2 33.7 57.0
C2 C7 C8 H7 120.0 120.0
C2 C7 C8 H7A 240.0 239.9
C7 C8 C9 C10 185.5 180.0
C9 C8 C7 H8 240.0 240.0
C9 C8 C7 H8A 120.0 120.0
C7 C8 C9 H9 305.4 300.0
C7 C8 C9 H9A 65.5 60.0
H7 C7 C8 H7A 120.0 119.9
H8 C8 C7 H8A 240.0 240.0
C9 C8 C7 H7 54.6 60.0
C9 C8 C7 H7A 294.6 300.1
C7 C8 C9 H8 120.0 119.9
C7 C8 C9 H8A 240.0 240.0
C8 C9 C10 C11 293.7 180.0
C10 C9 C8 H9 240.0 240.0
C10 C9 C8 H9A 120.0 120.0
C8 C9 C10 H10 53.7 300.0
C8 C9 C10 H10A 173.7 60.0
H8 C8 C9 H8A 120.0 120.0
H9 C9 C8 H9A 240.0 240.0
C10 C9 C8 H8 65.5 60.0
C10 C9 C8 H8A 305.5 300.0
C8 C9 C10 H9 120.0 120.0
C8 C9 C10 H9A 240.0 239.9
C9 C10 C11 O11 334.7 0.0
C9 C10 C11 O12 156.1 180.0
C11 C10 C9 H10 240.0 240.0
C11 C10 C9 H10A 120.0 120.0
H9 C9 C10 H9A 120.0 119.9
H10 C10 C9 H10A 240.0 240.0
C11 C10 C9 H9 173.7 60.0
C11 C10 C9 H9A 53.7 300.0
C9 C10 C11 H10 120.0 120.0
C9 C10 C11 H10A 240.0 240.0
O11 C11 C10 O12 178.6 180.1
C10 C11 O12 HO12 178.6 180.0
H10 C10 C11 H10A 120.0 120.0
C10 C11 O11 O12 181.4 179.9
O11 C11 C10 H10 214.7 240.0
O11 C11 C10 H10A 94.7 120.0
O11 C11 O12 HO12 360.0 360.0
C10 C11 O12 O11 178.6 180.1
O12 C11 C10 H10 36.1 59.9
O12 C11 C10 H10A 276.1 300.0
N1 C17 O18 O19 185.8 180.0
C17 O18 C20 C21 102.7 180.0
C17 O18 C20 H20 222.6 300.0
C17 O18 C20 H20A 342.7 60.0
N1 C17 O19 O18 174.2 180.0
O19 C17 O18 C20 339.1 0.0
C20 O18 C17 O19 339.1 0.0
O18 C20 C21 C22 120.4 90.0
O18 C20 C21 C26 295.3 269.7
C21 C20 O18 H20 240.0 240.0
C21 C20 O18 H20A 120.0 120.0
H20 C20 O18 H20A 240.0 240.0
O18 C20 C21 H20 120.0 120.0
O18 C20 C21 H20A 240.0 240.0
C22 C21 C20 C26 185.1 180.2
C20 C21 C22 C23 178.1 180.0
C20 C21 C22 H22 358.1 0.0
C20 C21 C26 C25 180.8 179.8
C20 C21 C26 H26 0.8 360.0
H20 C20 C21 H20A 120.0 119.9
C20 C21 C22 C26 175.0 179.8
C22 C21 C20 H20 0.4 329.9
C22 C21 C20 H20A 240.4 210.0
C22 C21 C26 C25 355.6 359.6
C22 C21 C26 H26 175.7 179.8
C21 C22 C23 C24 0.4 0.0
C23 C22 C21 H22 180.0 180.0
C21 C22 C23 H23 180.4 180.0
C20 C21 C26 C22 185.1 180.2
C26 C21 C20 H20 175.3 149.7
C26 C21 C20 H20A 55.3 29.8
C26 C21 C22 C23 3.1 0.2
C26 C21 C22 H22 183.1 180.3
C24 C25 C26 C21 2.2 0.4
C21 C26 C25 H25 182.1 180.3
C25 C26 C21 H26 180.0 179.8
C23 C22 C21 C26 3.1 0.2
C21 C22 C23 H22 180.0 180.0
C22 C23 C24 C25 357.4 359.9
C24 C23 C22 H23 180.0 180.0
C22 C23 C24 H24 177.4 180.0
C24 C23 C22 H22 180.4 180.0
C22 C23 C24 H23 180.0 180.0
C23 C24 C25 C26 1.3 359.8
C25 C24 C23 H24 180.0 180.0
C23 C24 C25 H25 181.3 180.0
C21 C26 C25 C24 2.2 0.4
C25 C24 C23 H23 177.3 180.0
C23 C24 C25 H24 180.0 180.0
C26 C25 C24 H25 180.0 179.9
C24 C25 C26 H26 182.1 180.2
C21 C26 C25 H26 180.0 180.2
C26 C25 C24 H24 181.3 179.8
C24 C25 C26 H25 180.0 180.1
H2 C2 S1 C6 77.3 83.6
S1 C2 H2 C4 242.8 246.7
S1 C2 H2 C7 123.3 123.4
C4 C2 H2 C7 240.5 236.7
H2 C2 C4 N2 167.2 151.4
H2 C2 C4 C5 280.7 266.3
H2 C2 C4 H4 47.9 30.1
H2 C2 C7 C8 33.7 57.0
H2 C2 C7 H7 153.7 177.0
H2 C2 C7 H7A 273.7 296.9
C3 N2 HN2 C4 180.0 180.0
HN2 N2 C3 O3 356.8 0.1
HN2 N2 C4 C5 185.4 180.0
HN2 N2 C4 H4 58.2 61.5
H4 C4 C2 C7 290.9 266.8
C2 C4 H4 N2 126.4 120.7
C2 C4 H4 C5 242.7 235.1
H4 C4 C2 H2 47.9 30.1
N2 C4 H4 C5 116.3 114.5
H4 C4 N2 HN2 58.2 61.5
H4 C4 C5 C6 227.7 236.3
H4 C4 C5 H5 343.6 0.1
H5 C5 N1 C17 337.9 298.5
N1 C5 H5 C4 244.8 245.7
N1 C5 H5 C6 122.4 120.9
C4 C5 H5 C6 237.6 235.2
H5 C5 C4 H4 343.6 0.1
H5 C5 C6 H6 101.0 93.4
H5 C5 C6 H6A 341.0 330.1
S1 C6 H6 C5 245.8 246.7
S1 C6 H6 H6A 122.9 123.4
H6 C6 C5 H5 101.0 93.4
C5 C6 H6 H6A 237.1 236.7
S1 C6 H6A C5 114.1 113.3
S1 C6 H6A H6 237.1 236.6
H6A C6 C5 H5 341.0 330.1
C5 C6 H6A H6 122.9 123.3
C2 C7 H7 C8 240.2 240.0
H7 C7 C2 H2 153.7 177.0
C2 C7 H7 H7A 120.1 120.0
H7 C7 C8 C9 54.6 60.0
C8 C7 H7 H7A 239.9 240.0
H7 C7 C8 H8 174.6 180.0
H7 C7 C8 H8A 294.6 300.0
C2 C7 H7A C8 119.8 120.1
H7A C7 C2 H2 273.7 296.9
C2 C7 H7A H7 239.9 240.0
H7A C7 C8 C9 294.6 300.1
C8 C7 H7A H7 120.1 120.0
H7A C7 C8 H8 54.6 60.0
H7A C7 C8 H8A 174.6 180.1
C7 C8 H8 C9 239.2 240.0
H8 C8 C7 H7 174.6 180.0
H8 C8 C7 H7A 54.6 60.0
C7 C8 H8 H8A 119.6 120.0
H8 C8 C9 C10 65.5 60.0
C9 C8 H8 H8A 240.4 240.0
H8 C8 C9 H9 185.5 180.1
H8 C8 C9 H9A 305.5 300.0
C7 C8 H8A C9 120.8 120.0
H8A C8 C7 H7 294.6 300.0
H8A C8 C7 H7A 174.6 180.1
C7 C8 H8A H8 240.4 240.0
H8A C8 C9 C10 305.5 300.0
C9 C8 H8A H8 119.6 120.0
H8A C8 C9 H9 65.4 60.0
H8A C8 C9 H9A 185.5 180.0
C8 C9 H9 C10 238.3 240.0
H9 C9 C8 H8 185.5 180.1
H9 C9 C8 H8A 65.4 60.0
C8 C9 H9 H9A 119.1 120.0
H9 C9 C10 C11 173.7 60.0
C10 C9 H9 H9A 240.9 240.0
H9 C9 C10 H10 293.7 180.0
H9 C9 C10 H10A 53.7 300.0
C8 C9 H9A C10 121.7 120.0
H9A C9 C8 H8 305.5 300.0
H9A C9 C8 H8A 185.5 180.0
C8 C9 H9A H9 240.8 240.0
H9A C9 C10 C11 53.7 300.0
C10 C9 H9A H9 119.1 120.0
H9A C9 C10 H10 173.7 60.1
H9A C9 C10 H10A 293.7 180.1
C9 C10 H10 C11 238.7 240.0
H10 C10 C9 H9 293.7 180.0
H10 C10 C9 H9A 173.7 60.1
C9 C10 H10 H10A 119.4 120.0
H10 C10 C11 O11 214.7 240.0
H10 C10 C11 O12 36.1 59.9
C11 C10 H10 H10A 240.6 240.0
C9 C10 H10A C11 121.3 120.0
H10A C10 C9 H9 53.7 300.0
H10A C10 C9 H9A 293.7 180.1
C9 C10 H10A H10 240.7 240.0
H10A C10 C11 O11 94.7 120.0
H10A C10 C11 O12 276.1 300.0
C11 C10 H10A H10 119.4 120.0
O18 C20 H20 C21 240.8 240.0
O18 C20 H20 H20A 120.4 120.0
H20 C20 C21 C22 0.4 329.9
H20 C20 C21 C26 175.3 149.7
C21 C20 H20 H20A 239.6 240.0
O18 C20 H20A C21 119.2 120.0
O18 C20 H20A H20 239.6 240.0
H20A C20 C21 C22 240.4 210.0
H20A C20 C21 C26 55.3 29.8
C21 C20 H20A H20 120.4 119.9
H22 C22 C21 C26 183.1 180.3
C21 C22 H22 C23 180.0 180.0
H22 C22 C23 C24 180.4 180.0
H22 C22 C23 H23 0.4 360.0
C22 C23 H23 C24 180.0 180.0
H23 C23 C22 H22 0.4 360.0
H23 C23 C24 C25 177.3 180.0
H23 C23 C24 H24 357.3 360.0
C23 C24 H24 C25 180.0 180.0
H24 C24 C23 H23 357.3 360.0
H24 C24 C25 C26 181.3 179.8
H24 C24 C25 H25 1.3 359.9
C24 C25 H25 C26 180.0 179.9
H25 C25 C24 H24 1.3 359.9
H25 C25 C26 H26 2.1 0.1
C21 C26 H26 C25 180.0 179.8
H26 C26 C25 H25 2.1 0.1