PDB Chemical Component VHH

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for VHH

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
N1	C3	1.293	1.340
N1	C5	1.432	1.472
N1	C18	1.470	1.465
S1	C2	1.746	1.839
S1	C6	1.761	1.840
C2	C4	1.571	1.541
C2	C7	1.539	1.530
N2	C3	1.332	1.340
N2	C4	1.450	1.471
N2	C17	1.473	1.465
C3	O3	1.322	1.216
C4	C5	1.569	1.534
C5	C6	1.526	1.541
C7	C8	1.346	1.530
C8	C9	1.543	1.530
C9	C10	1.532	1.530
C10	C11	1.347	1.508
C11	O11	1.248	1.342
C11	O12	1.247	1.208
C2	H2	1.100	1.090
C4	H4	1.100	1.090
C5	H5	1.100	1.089
C6	H6	1.100	1.090
C6	H6A	1.100	1.090
C7	H7	1.101	1.090
C7	H7A	1.100	1.090
C8	H8	1.100	1.090
C8	H8A	1.100	1.090
C9	H9	1.100	1.090
C9	H9A	1.100	1.090
C10	H10	1.100	1.090
C10	H10A	1.100	1.089
O11	HO11	0.950	0.967
C17	H17	1.100	1.090
C17	H17A	1.100	1.090
C17	H17B	1.100	1.091
C18	H18	1.100	1.090
C18	H18A	1.100	1.090
C18	H18B	1.100	1.090

Bond Angles for VHH

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C3	N1	C5	110.6	109.1
C3	N1	C18	123.0	125.5
N1	C3	N2	114.3	113.9
N1	C3	O3	116.7	123.1
C5	N1	C18	126.3	125.4
N1	C5	C4	103.2	104.0
N1	C5	C6	104.2	109.2
N1	C5	H5	116.8	110.3
N1	C18	H18	109.5	109.5
N1	C18	H18A	109.5	109.5
N1	C18	H18B	109.5	109.5
C2	S1	C6	95.5	94.8
S1	C2	C4	104.8	102.7
S1	C2	C7	110.4	110.7
S1	C2	H2	116.3	110.8
S1	C6	C5	106.0	102.7
S1	C6	H6	110.7	110.7
S1	C6	H6A	110.7	110.8
C4	C2	C7	119.7	110.8
C2	C4	N2	112.5	109.2
C2	C4	C5	108.3	112.4
C4	C2	H2	106.2	110.7
C2	C4	H4	106.2	110.3
C2	C7	C8	116.9	109.5
C7	C2	H2	100.1	110.8
C2	C7	H7	107.1	109.5
C2	C7	H7A	107.1	109.5
C3	N2	C4	109.2	109.1
C3	N2	C17	126.6	125.5
N2	C3	O3	128.8	123.0
C4	N2	C17	123.8	125.5
N2	C4	C5	102.2	104.0
N2	C4	H4	111.9	110.2
N2	C17	H17	109.5	109.4
N2	C17	H17A	109.5	109.5
N2	C17	H17B	109.4	109.5
C4	C5	C6	110.4	112.4
C5	C4	H4	115.9	110.5
C4	C5	H5	111.3	110.3
C6	C5	H5	110.4	110.5
C5	C6	H6	110.6	110.8
C5	C6	H6A	110.6	110.7
C7	C8	C9	123.1	109.5
C8	C7	H7	107.1	109.5
C8	C7	H7A	107.1	109.4
C7	C8	H8	105.2	109.5
C7	C8	H8A	105.2	109.5
C8	C9	C10	112.4	109.4
C9	C8	H8	105.2	109.5
C9	C8	H8A	105.2	109.5
C8	C9	H9	108.5	109.5
C8	C9	H9A	108.5	109.5
C9	C10	C11	118.1	109.5
C10	C9	H9	108.5	109.5
C10	C9	H9A	108.5	109.5
C9	C10	H10	106.7	109.5
C9	C10	H10A	106.7	109.5
C10	C11	O11	118.1	120.0
C10	C11	O12	122.7	120.0
C11	C10	H10	106.7	109.4
C11	C10	H10A	106.7	109.5
O11	C11	O12	119.2	120.0
C11	O11	HO11	109.5	117.0
H6	C6	H6A	108.3	110.9
H7	C7	H7A	111.8	109.5
H8	C8	H8A	113.4	109.4
H9	C9	H9A	110.4	109.5
H10	C10	H10A	112.1	109.5
H17	C17	H17A	109.5	109.5
H17	C17	H17B	109.5	109.5
H17A	C17	H17B	109.5	109.5
H18	C18	H18A	109.5	109.4
H18	C18	H18B	109.5	109.5
H18A	C18	H18B	109.4	109.5

Torsion Angles for VHH

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C5	N1	C3	C18	183.5	180.3
C3	N1	C5	C4	0.7	360.0
C3	N1	C5	C6	245.3	239.9
C3	N1	C5	H5	123.1	118.2
C3	N1	C18	H18	180.0	0.0
C3	N1	C18	H18A	300.0	120.0
C3	N1	C18	H18B	60.0	240.0
N1	C3	N2	C4	7.7	0.1
N1	C3	N2	C17	195.2	180.0
N2	C3	N1	O3	175.6	180.0
C3	N1	C5	C18	176.4	179.7
C5	N1	C3	N2	354.8	360.0
C5	N1	C3	O3	179.2	180.0
C5	N1	C18	H18	355.9	179.7
C5	N1	C18	H18A	116.0	299.7
C5	N1	C18	H18B	235.9	59.7
S1	C6	C5	N1	89.5	90.3
C2	C4	C5	N1	244.5	242.0
N2	C4	C5	N1	3.4	0.0
C4	C5	N1	C6	115.4	120.1
N1	C5	C4	H4	125.4	118.3
C4	C5	N1	H5	237.5	241.8
C6	C5	N1	H5	122.1	121.7
N1	C5	C6	H6	329.6	332.0
N1	C5	C6	H6A	209.6	208.5
C3	N1	C18	C5	184.1	180.3
C18	N1	C3	N2	171.3	179.7
C18	N1	C3	O3	355.7	359.7
C18	N1	C5	C4	184.3	180.2
C18	N1	C5	C6	68.9	60.1
C18	N1	C5	H5	306.8	298.5
H18	C18	N1	H18A	239.9	240.0
H18	C18	N1	H18B	120.0	120.0
H18A	C18	N1	H18B	240.0	239.9
C2	S1	C6	C5	34.2	34.7
C2	S1	C6	H6	154.2	153.0
C2	S1	C6	H6A	274.2	276.4
C4	C2	S1	C7	130.1	118.3
S1	C2	C4	N2	275.8	269.7
S1	C2	C4	C5	27.9	24.6
C4	C2	S1	H2	243.2	241.7
S1	C2	C4	H4	153.0	148.4
S1	C2	C7	C8	290.2	295.8
C7	C2	S1	H2	113.1	123.4
S1	C2	C7	H7	50.2	55.8
S1	C2	C7	H7A	170.2	175.8
N1	C5	C6	S1	89.5	90.3
C6	S1	C2	C4	323.5	325.3
C6	S1	C2	C7	193.4	207.0
C6	S1	C2	H2	80.3	83.6
C4	C5	C6	S1	339.3	335.4
S1	C6	C5	H5	215.8	211.8
C5	C6	S1	H6	240.0	241.7
C5	C6	S1	H6A	120.0	118.3
H6	C6	S1	H6A	240.0	236.6
N1	C5	C4	C2	244.5	242.0
C4	C2	S1	C6	323.5	325.3
S1	C2	C4	C7	235.6	241.7
S1	C2	C4	H2	123.6	118.3
C4	C2	C7	C8	168.5	182.5
C7	C2	C4	H2	248.0	236.6
C4	C2	C7	H7	288.5	302.5
C4	C2	C7	H7A	48.5	62.5
C3	N2	C4	C2	109.5	120.2
C2	C4	N2	C17	282.2	300.2
N2	C4	C2	C5	247.8	245.1
N2	C4	C2	H4	122.7	121.3
C2	C4	C5	C6	355.4	360.0
C5	C4	C2	H4	234.9	236.2
C2	C4	C5	H5	118.4	123.8
C7	C2	S1	C6	193.4	207.0
S1	C2	C7	C4	121.6	113.3
S1	C2	C7	H2	236.9	236.6
C7	C2	C4	N2	40.2	28.0
C7	C2	C4	C5	152.3	142.9
C4	C2	C7	H2	115.3	123.3
C7	C2	C4	H4	277.4	266.7
C2	C7	C8	C9	180.6	180.0
C8	C7	C2	H7	240.0	240.0
C8	C7	C2	H7A	120.0	120.0
C2	C7	C8	H8	300.6	300.0
C2	C7	C8	H8A	60.5	60.0
H7	C7	C2	H7A	240.0	240.0
N2	C3	N1	C5	354.8	360.0
N2	C3	N1	C18	171.3	179.7
N1	C3	N2	O3	185.1	180.0
C2	C4	N2	C3	109.5	120.2
C4	N2	C3	C17	172.4	180.1
C3	N2	C4	C5	353.6	359.9
C3	N2	C4	H4	228.9	241.5
C3	N2	C17	H17	180.0	54.4
C3	N2	C17	H17A	300.0	174.4
C3	N2	C17	H17B	60.0	294.4
N1	C5	C4	N2	3.4	0.0
N2	C4	C2	C7	40.2	28.0
C2	C4	N2	C5	115.9	120.2
N2	C4	C2	H2	152.2	151.4
C2	C4	N2	H4	240.5	238.7
C3	N2	C4	C17	187.3	179.9
C4	N2	C3	O3	182.6	180.1
C4	N2	C17	H17	8.6	234.3
C4	N2	C17	H17A	128.6	354.3
C4	N2	C17	H17B	248.6	114.3
N2	C4	C5	C6	114.4	118.0
C5	C4	N2	H4	124.6	118.5
N2	C4	C5	H5	237.3	241.8
C3	N2	C17	C4	171.4	180.1
C17	N2	C3	O3	10.1	360.0
C17	N2	C4	C5	166.3	180.0
C17	N2	C4	H4	41.6	61.5
H17	C17	N2	H17A	240.0	240.0
H17	C17	N2	H17B	120.0	120.0
H17A	C17	N2	H17B	240.0	240.0
O3	C3	N1	C5	179.2	180.0
O3	C3	N1	C18	355.7	359.7
N1	C3	O3	N2	174.8	180.0
O3	C3	N2	C4	182.6	180.1
O3	C3	N2	C17	10.1	360.0
C4	C5	N1	C18	184.3	180.2
N1	C5	C4	C6	249.1	242.0
N1	C5	C4	H5	126.1	118.2
S1	C6	C5	C4	339.3	335.4
C5	C4	C2	C7	152.3	142.9
C2	C4	C5	N2	241.1	241.9
C5	C4	C2	H2	264.4	266.3
C2	C4	C5	H4	119.2	123.7
C5	C4	N2	C17	166.3	180.0
N2	C4	C5	H4	238.1	241.7
C6	C5	C4	H5	237.0	236.2
C4	C5	C6	H6	219.3	217.1
C4	C5	C6	H6A	99.3	93.7
C6	C5	N1	C18	68.9	60.1
N1	C5	C6	C4	110.3	114.9
N1	C5	C6	H5	233.7	238.5
S1	C6	C5	H6	120.0	118.3
S1	C6	C5	H6A	240.0	241.7
C6	C5	C4	H4	236.3	236.3
C4	C5	C6	H5	123.5	123.7
H6	C6	C5	H6A	120.0	123.4
C8	C7	C2	H2	53.2	59.1
C2	C7	C8	H7	120.0	120.0
C2	C7	C8	H7A	240.0	240.0
C7	C8	C9	C10	179.3	180.0
C9	C8	C7	H8	240.0	240.0
C9	C8	C7	H8A	120.0	120.0
C7	C8	C9	H9	299.3	300.0
C7	C8	C9	H9A	59.3	60.0
H7	C7	C8	H7A	120.0	120.0
H8	C8	C7	H8A	240.0	240.0
C9	C8	C7	H7	60.6	60.0
C9	C8	C7	H7A	300.6	300.0
C7	C8	C9	H8	120.0	120.0
C7	C8	C9	H8A	240.0	240.0
C8	C9	C10	C11	275.0	180.0
C10	C9	C8	H9	240.0	240.0
C10	C9	C8	H9A	120.0	120.0
C8	C9	C10	H10	35.0	299.9
C8	C9	C10	H10A	155.0	60.1
H8	C8	C9	H8A	120.0	120.0
H9	C9	C8	H9A	240.0	240.0
C10	C9	C8	H8	59.3	60.0
C10	C9	C8	H8A	299.3	300.0
C8	C9	C10	H9	120.0	120.0
C8	C9	C10	H9A	240.0	240.0
C9	C10	C11	O11	358.8	180.0
C9	C10	C11	O12	180.3	360.0
C11	C10	C9	H10	240.0	240.1
C11	C10	C9	H10A	120.0	120.0
H9	C9	C10	H9A	120.0	120.0
H10	C10	C9	H10A	240.0	239.9
C11	C10	C9	H9	155.0	60.0
C11	C10	C9	H9A	35.0	300.0
C9	C10	C11	H10	120.0	120.0
C9	C10	C11	H10A	240.0	240.0
O11	C11	C10	O12	178.5	180.0
C10	C11	O11	HO11	181.4	179.9
H10	C10	C11	H10A	120.0	120.0
C10	C11	O11	O12	181.4	180.0
O11	C11	C10	H10	238.8	60.0
O11	C11	C10	H10A	118.8	300.0
C10	C11	O12	O11	178.5	180.0
O12	C11	C10	H10	60.3	240.0
O12	C11	C10	H10A	300.3	120.0
O12	C11	O11	HO11	0.0	360.0
H2	C2	S1	C6	80.3	83.6
S1	C2	H2	C4	244.0	246.7
S1	C2	H2	C7	118.9	123.3
C4	C2	H2	C7	234.9	236.6
H2	C2	C4	N2	152.2	151.4
H2	C2	C4	C5	264.4	266.3
H2	C2	C4	H4	29.5	30.1
H2	C2	C7	C8	53.2	59.1
H2	C2	C7	H7	173.2	179.1
H2	C2	C7	H7A	293.2	299.1
H4	C4	C2	C7	277.4	266.7
C2	C4	H4	N2	123.1	120.7
C2	C4	H4	C5	239.7	235.1
H4	C4	C2	H2	29.5	30.1
H4	C4	N2	C17	41.6	61.5
N2	C4	H4	C5	116.6	114.4
H4	C4	C5	C6	236.3	236.3
H4	C4	C5	H5	359.3	0.1
H5	C5	N1	C18	306.8	298.5
N1	C5	H5	C4	241.8	245.7
N1	C5	H5	C6	118.8	120.9
C4	C5	H5	C6	237.0	235.2
H5	C5	C4	H4	359.3	0.1
H5	C5	C6	H6	95.8	93.5
H5	C5	C6	H6A	335.8	330.0
S1	C6	H6	C5	242.8	246.7
S1	C6	H6	H6A	121.4	123.4
H6	C6	C5	H5	95.8	93.5
C5	C6	H6	H6A	238.6	236.6
S1	C6	H6A	C5	117.2	113.3
S1	C6	H6A	H6	238.6	236.6
H6A	C6	C5	H5	335.8	330.0
C5	C6	H6A	H6	121.4	123.4
C2	C7	H7	C8	233.9	240.0
H7	C7	C2	H2	173.2	179.1
C2	C7	H7	H7A	116.9	120.0
H7	C7	C8	C9	60.6	60.0
C8	C7	H7	H7A	243.0	240.0
H7	C7	C8	H8	180.6	180.0
H7	C7	C8	H8A	300.6	300.0
C2	C7	H7A	C8	126.1	120.0
H7A	C7	C2	H2	293.2	299.1
C2	C7	H7A	H7	243.1	240.0
H7A	C7	C8	C9	300.6	300.0
C8	C7	H7A	H7	117.0	120.0
H7A	C7	C8	H8	60.6	60.0
H7A	C7	C8	H8A	180.5	180.0
C7	C8	H8	C9	228.7	240.0
H8	C8	C7	H7	180.6	180.0
H8	C8	C7	H7A	60.6	60.0
C7	C8	H8	H8A	114.3	120.0
H8	C8	C9	C10	59.3	60.0
C9	C8	H8	H8A	245.6	240.0
H8	C8	C9	H9	179.3	180.0
H8	C8	C9	H9A	299.3	300.0
C7	C8	H8A	C9	131.3	120.0
H8A	C8	C7	H7	300.6	300.0
H8A	C8	C7	H7A	180.5	180.0
C7	C8	H8A	H8	245.6	240.0
H8A	C8	C9	C10	299.3	300.0
C9	C8	H8A	H8	114.4	120.0
H8A	C8	C9	H9	59.3	60.0
H8A	C8	C9	H9A	179.3	180.0
C8	C9	H9	C10	237.6	240.0
H9	C9	C8	H8	179.3	180.0
H9	C9	C8	H8A	59.3	60.0
C8	C9	H9	H9A	118.8	120.0
H9	C9	C10	C11	155.0	60.0
C10	C9	H9	H9A	241.2	240.0
H9	C9	C10	H10	275.0	179.9
H9	C9	C10	H10A	35.0	300.0
C8	C9	H9A	C10	122.4	120.0
H9A	C9	C8	H8	299.3	300.0
H9A	C9	C8	H8A	179.3	180.0
C8	C9	H9A	H9	241.2	240.0
H9A	C9	C10	C11	35.0	300.0
C10	C9	H9A	H9	118.8	120.0
H9A	C9	C10	H10	155.0	60.0
H9A	C9	C10	H10A	275.0	180.1
C9	C10	H10	C11	232.9	240.0
H10	C10	C9	H9	275.0	179.9
H10	C10	C9	H9A	155.0	60.0
C9	C10	H10	H10A	116.5	120.1
H10	C10	C11	O11	238.8	60.0
H10	C10	C11	O12	60.3	240.0
C11	C10	H10	H10A	243.5	240.0
C9	C10	H10A	C11	127.1	120.0
H10A	C10	C9	H9	35.0	300.0
H10A	C10	C9	H9A	275.0	180.1
C9	C10	H10A	H10	243.6	239.9
H10A	C10	C11	O11	118.8	300.0
H10A	C10	C11	O12	300.3	120.0
C11	C10	H10A	H10	116.5	119.9
HO11	O11	C11	O12	0.0	360.0
N2	C17	H17	H17A	120.0	120.0
N2	C17	H17	H17B	240.0	240.0
H17A	C17	H17	H17B	120.0	120.0
N2	C17	H17A	H17	240.0	240.0
N2	C17	H17A	H17B	120.0	120.0
H17	C17	H17A	H17B	240.0	240.0
N2	C17	H17B	H17	120.0	120.0
N2	C17	H17B	H17A	240.0	240.0
H17	C17	H17B	H17A	120.0	120.0
N1	C18	H18	H18A	120.0	120.0
N1	C18	H18	H18B	240.0	240.0
H18A	C18	H18	H18B	120.0	120.0
N1	C18	H18A	H18	240.0	240.0
N1	C18	H18A	H18B	120.0	120.0
H18	C18	H18A	H18B	240.0	240.0
N1	C18	H18B	H18	120.0	120.0
N1	C18	H18B	H18A	240.0	240.0
H18	C18	H18B	H18A	120.0	120.0