PDB Chemical Component VHA

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for VHA

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 C2 1.402 1.395
C1 C7 1.396 1.386
C2 C3 1.403 1.398
C2 C24 1.398 1.488
C3 C4 1.529 1.509
C3 C5 1.410 1.383
C5 C6 1.393 1.378
C6 C7 1.401 1.388
C7 O8 1.391 1.349
O8 C9 1.468 1.426
C9 C10 1.552 1.535
C10 C11 1.541 1.529
C11 C12 1.535 1.528
C12 O13 1.464 1.423
O13 C14 1.355 1.350
C14 C15 1.394 1.396
C14 C16 1.404 1.381
C15 C19 1.394 1.379
C16 C17 1.394 1.380
C17 C18 1.406 1.371
C18 C19 1.382 1.408
C19 S20 1.763 1.749
S20 C21 1.757 1.737
C21 N22 1.317 1.351
C21 C23 1.395 1.388
N22 C26 1.363 1.318
C23 C24 1.389 1.391
C24 N25 1.351 1.336
N25 C26 1.351 1.314
C26 N27 1.329 1.384
C1 H1 1.080 1.081
C4 H4 1.101 1.090
C4 H4A 1.100 1.090
C4 H4B 1.100 1.090
C5 H5 1.080 1.081
C6 H6 1.080 1.079
C9 H9 1.100 1.088
C9 H9A 1.100 1.092
C10 H10 1.100 1.090
C10 H10A 1.100 1.091
C11 H11 1.100 1.092
C11 H11A 1.100 1.090
C12 H12 1.100 1.093
C12 H12A 1.100 1.091
C15 H15 1.080 1.079
C16 H16 1.080 1.079
C17 H17 1.080 1.080
C18 H18 1.080 1.078
C23 H23 1.080 1.082
N27 HN27 1.000 0.970
N27 HN2A 1.000 0.971

Bond Angles for VHA

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 C1 C7 121.2 121.2
C1 C2 C3 120.1 118.5
C1 C2 C24 114.8 119.8
C2 C1 H1 119.4 118.6
C1 C7 C6 118.2 119.3
C1 C7 O8 120.8 121.8
C7 C1 H1 119.4 120.2
C3 C2 C24 125.1 121.8
C2 C3 C4 123.6 123.4
C2 C3 C5 119.1 120.2
C2 C24 C23 119.4 123.6
C2 C24 N25 122.5 118.5
C4 C3 C5 117.3 116.4
C3 C4 H4 109.5 109.5
C3 C4 H4A 109.5 109.5
C3 C4 H4B 109.5 109.5
C3 C5 C6 119.7 120.7
C3 C5 H5 120.1 119.2
C5 C6 C7 121.7 120.2
C6 C5 H5 120.1 120.2
C5 C6 H6 119.1 120.1
C6 C7 O8 121.0 119.0
C7 C6 H6 119.2 119.7
C7 O8 C9 117.2 119.8
O8 C9 C10 117.7 108.4
O8 C9 H9 106.8 110.2
O8 C9 H9A 106.8 109.4
C9 C10 C11 112.9 109.5
C10 C9 H9 106.8 110.2
C10 C9 H9A 106.8 109.4
C9 C10 H10 108.3 109.6
C9 C10 H10A 108.3 109.4
C10 C11 C12 112.1 109.5
C11 C10 H10 108.3 109.5
C11 C10 H10A 108.3 109.4
C10 C11 H11 108.6 109.5
C10 C11 H11A 108.6 109.5
C11 C12 O13 102.3 110.3
C12 C11 H11 108.6 109.4
C12 C11 H11A 108.6 109.6
C11 C12 H12 112.0 109.1
C11 C12 H12A 111.9 109.4
C12 O13 C14 117.9 117.7
O13 C12 H12 111.9 109.2
O13 C12 H12A 111.9 109.1
O13 C14 C15 115.3 119.8
O13 C14 C16 125.2 120.2
C15 C14 C16 119.5 120.1
C14 C15 C19 119.6 120.2
C14 C15 H15 120.2 118.6
C14 C16 C17 120.4 120.0
C14 C16 H16 119.8 120.2
C15 C19 C18 121.4 118.7
C15 C19 S20 121.6 124.6
C19 C15 H15 120.2 121.1
C16 C17 C18 119.8 120.1
C17 C16 H16 119.8 119.8
C16 C17 H17 120.1 119.9
C17 C18 C19 119.2 120.7
C18 C17 H17 120.1 119.9
C17 C18 H18 120.4 120.4
C18 C19 S20 117.0 116.6
C19 C18 H18 120.4 118.9
C19 S20 C21 106.4 108.6
S20 C21 N22 115.1 114.9
S20 C21 C23 122.8 128.0
N22 C21 C23 122.2 117.0
C21 N22 C26 117.7 122.3
C21 C23 C24 119.0 119.9
C21 C23 H23 120.6 121.4
N22 C26 N25 122.3 120.6
N22 C26 N27 119.0 119.6
C23 C24 N25 118.0 118.0
C24 C23 H23 120.5 118.7
C24 N25 C26 120.6 122.1
N25 C26 N27 118.4 119.8
C26 N27 HN27 109.5 120.0
C26 N27 HN2A 109.4 120.0
H4 C4 H4A 109.5 109.5
H4 C4 H4B 109.5 109.4
H4A C4 H4B 109.4 109.5
H9 C9 H9A 112.0 109.3
H10 C10 H10A 110.6 109.5
H11 C11 H11A 110.3 109.3
H12 C12 H12A 106.9 109.6
HN27 N27 HN2A 109.5 120.0

Torsion Angles for VHA

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 C1 C7 C6 358.0 359.8
C2 C1 C7 O8 177.9 179.4
C7 C1 C2 H1 180.0 179.7
C3 C2 C1 C24 180.8 180.4
C1 C2 C3 C4 179.6 179.0
C1 C2 C3 C5 0.1 359.3
C1 C2 C24 C23 50.4 345.7
C1 C2 C24 N25 234.0 164.5
C7 C1 C2 C3 0.8 0.7
C7 C1 C2 C24 180.0 180.3
C2 C1 C7 H1 180.0 180.3
C5 C6 C7 C1 2.4 359.7
C6 C7 C1 O8 180.1 180.3
C1 C7 C6 H6 182.4 179.3
C1 C7 O8 C9 355.7 60.1
C3 C2 C1 C7 0.8 0.7
C1 C2 C3 C24 179.1 179.6
C3 C2 C1 H1 180.8 181.1
C3 C2 C24 C23 229.6 165.3
C3 C2 C24 N25 53.2 344.0
C4 C3 C2 C5 179.5 179.7
C2 C3 C4 H4 90.3 90.0
C2 C3 C4 H4A 210.3 210.0
C2 C3 C4 H4B 330.3 330.0
C2 C3 C5 C6 0.2 0.1
C2 C3 C5 H5 180.2 180.0
C24 C2 C1 C7 180.0 180.3
C1 C2 C24 C3 180.8 180.4
C24 C2 C1 H1 360.0 0.6
C24 C2 C3 C4 0.5 359.4
C24 C2 C3 C5 181.0 179.8
C21 C23 C24 C2 183.5 177.4
C23 C24 C2 N25 176.4 181.2
C2 C24 C23 H23 3.5 354.3
C2 C24 N25 C26 180.2 179.7
C4 C3 C2 C24 0.5 359.4
C2 C3 C4 C5 180.5 180.3
C4 C3 C5 C6 180.7 180.4
C4 C3 C5 H5 0.7 0.3
H4 C4 C3 H4A 240.0 240.0
H4 C4 C3 H4B 120.0 120.0
H4A C4 C3 H4B 240.1 240.0
C5 C3 C2 C24 181.0 179.8
C2 C3 C5 C4 179.5 179.7
C5 C3 C4 H4 269.8 269.6
C5 C3 C4 H4A 29.8 29.6
C5 C3 C4 H4B 149.8 149.7
C3 C5 C6 C7 358.5 0.4
C6 C5 C3 H5 180.0 180.1
C3 C5 C6 H6 178.5 180.8
C1 C7 C6 C5 2.4 359.7
C3 C5 C6 H5 180.0 179.9
C5 C6 C7 O8 182.5 180.0
C7 C6 C5 H6 180.0 179.6
C1 C7 C6 O8 179.9 179.7
C6 C7 C1 H1 178.0 179.4
C7 C6 C5 H5 178.5 180.5
C5 C6 C7 H6 180.0 180.4
C6 C7 O8 C9 175.5 239.8
C1 C7 O8 C6 180.1 180.3
O8 C7 C1 H1 357.9 359.1
O8 C7 C6 H6 2.5 359.6
C7 O8 C9 C10 192.9 214.1
C7 O8 C9 H9 312.9 334.7
C7 O8 C9 H9A 72.9 94.8
O8 C9 C10 C11 180.2 119.6
C10 C9 O8 H9 240.0 239.4
C10 C9 O8 H9A 120.0 119.2
O8 C9 C10 H10 300.2 239.7
O8 C9 C10 H10A 60.2 359.7
H9 C9 O8 H9A 240.0 239.8
O8 C9 C10 H9 120.0 120.6
O8 C9 C10 H9A 240.0 240.8
C9 C10 C11 C12 291.0 311.5
C11 C10 C9 H10 240.0 239.9
C11 C10 C9 H10A 120.0 119.8
C9 C10 C11 H11 51.0 71.4
C9 C10 C11 H11A 171.0 191.2
H9 C9 C10 H9A 120.0 120.1
H10 C10 C9 H10A 240.0 240.0
C11 C10 C9 H9 60.2 359.0
C11 C10 C9 H9A 300.2 238.8
C9 C10 C11 H10 120.0 120.1
C9 C10 C11 H10A 240.0 240.2
C10 C11 C12 O13 87.6 217.5
C12 C11 C10 H11 240.0 240.0
C12 C11 C10 H11A 120.0 120.2
C10 C11 C12 H12 207.6 337.5
C10 C11 C12 H12A 327.7 97.5
H10 C10 C11 H10A 120.0 120.0
H11 C11 C10 H11A 240.0 240.2
C12 C11 C10 H10 171.0 191.3
C12 C11 C10 H10A 50.9 71.3
C10 C11 C12 H11 120.0 120.0
C10 C11 C12 H11A 240.0 239.8
C11 C12 O13 C14 193.3 228.8
O13 C12 C11 H12 240.0 240.0
O13 C12 C11 H12A 120.0 120.1
H11 C11 C12 H11A 120.0 119.8
H12 C12 C11 H12A 240.0 240.0
O13 C12 C11 H11 327.6 97.5
O13 C12 C11 H11A 207.6 337.7
C11 C12 O13 H12 120.0 119.9
C11 C12 O13 H12A 240.0 239.7
C12 O13 C14 C15 169.9 301.0
C12 O13 C14 C16 346.8 121.4
H12 C12 O13 H12A 120.0 119.8
C14 O13 C12 H12 73.3 108.9
C14 O13 C12 H12A 313.3 349.0
C15 C14 O13 C16 183.1 179.6
O13 C14 C15 C19 180.0 178.1
O13 C14 C15 H15 0.0 354.9
O13 C14 C16 C17 180.5 180.4
O13 C14 C16 H16 0.5 0.4
O13 C14 C15 C16 177.1 180.4
C15 C14 C16 C17 357.3 0.8
C15 C14 C16 H16 177.3 180.9
C14 C15 C19 C18 356.4 2.5
C14 C15 C19 S20 179.4 183.5
C19 C15 C14 H15 180.0 183.2
O13 C14 C16 C15 183.2 179.6
C16 C14 C15 C19 2.9 357.7
C16 C14 C15 H15 182.9 174.4
C14 C16 C17 C18 3.1 0.4
C17 C16 C14 H16 180.0 180.0
C14 C16 C17 H17 183.1 180.0
C19 C15 C14 C16 2.9 357.7
C14 C15 C19 H15 180.0 176.7
C17 C18 C19 C15 4.0 358.7
C18 C19 C15 S20 177.0 179.0
C15 C19 C18 H18 184.0 177.6
C15 C19 S20 C21 316.4 14.1
C14 C16 C17 H16 180.0 180.0
C16 C17 C18 C19 356.3 359.9
C18 C17 C16 H17 180.0 180.4
C16 C17 C18 H18 176.3 180.9
C15 C19 C18 C17 4.0 358.7
C18 C17 C16 H16 183.1 180.3
C16 C17 C18 H17 180.0 179.6
C17 C18 C19 S20 181.1 177.7
C19 C18 C17 H18 180.0 178.9
C15 C19 C18 S20 182.9 180.9
C18 C19 C15 H15 176.3 185.9
C19 C18 C17 H17 176.3 180.3
C17 C18 C19 H18 180.0 181.0
C18 C19 S20 C21 139.3 195.1
C15 C19 S20 C18 177.1 179.0
S20 C19 C15 H15 359.4 6.9
S20 C19 C18 H18 1.1 356.7
C19 S20 C21 N22 158.7 192.1
C19 S20 C21 C23 339.6 15.1
N22 C21 S20 C23 179.1 177.0
S20 C21 N22 C26 181.8 178.7
S20 C21 C23 C24 176.6 180.9
S20 C21 C23 H23 356.6 4.0
S20 C21 N22 C23 180.9 182.7
N22 C21 C23 C24 357.6 4.0
N22 C21 C23 H23 177.6 187.1
C21 N22 C26 N25 3.1 1.3
C21 N22 C26 N27 176.8 181.3
C2 C24 C23 C21 183.5 177.4
S20 C21 C23 N22 179.0 176.9
C23 C21 N22 C26 0.9 356.0
C21 C23 C24 N25 0.1 358.6
C24 C23 C21 H23 180.0 176.9
C26 N22 C21 C23 0.9 356.0
C24 N25 C26 N22 354.5 1.6
N25 C26 N22 N27 186.3 180.0
N22 C26 N27 HN27 0.0 0.1
N22 C26 N27 HN2A 120.0 180.0
C2 C24 C23 N25 183.4 178.8
C21 C23 C24 H23 180.0 183.1
C23 C24 N25 C26 3.7 358.5
C2 C24 N25 C23 176.5 181.2
N22 C26 N25 C24 354.5 1.6
N25 C24 C23 H23 180.1 175.6
C24 N25 C26 N27 180.7 181.6
N22 C26 N25 N27 173.8 180.0
N25 C26 N27 HN27 174.0 180.1
N25 C26 N27 HN2A 294.0 0.0
N22 C26 N27 N25 186.0 180.0
HN27 N27 C26 HN2A 240.0 180.0
C2 C1 H1 C7 180.0 179.7
H1 C1 C2 C3 180.8 181.1
H1 C1 C2 C24 360.0 0.6
H1 C1 C7 C6 178.0 179.4
H1 C1 C7 O8 357.9 359.1
H4 C4 C3 C5 269.8 269.6
C3 C4 H4 H4A 120.0 120.0
C3 C4 H4 H4B 240.0 240.0
H4A C4 H4 H4B 120.0 120.0
H4A C4 C3 C5 29.8 29.6
C3 C4 H4A H4 240.0 240.0
C3 C4 H4A H4B 120.0 120.0
H4 C4 H4A H4B 240.0 240.0
H4B C4 C3 C5 149.8 149.7
C3 C4 H4B H4 120.0 120.0
C3 C4 H4B H4A 240.0 240.0
H4 C4 H4B H4A 120.0 120.0
C3 C5 H5 C6 180.0 180.1
H5 C5 C6 C7 178.5 180.5
H5 C5 C6 H6 358.5 0.9
C5 C6 H6 C7 180.0 179.6
H6 C6 C5 H5 358.5 0.9
H6 C6 C7 O8 2.5 359.6
O8 C9 H9 C10 233.2 240.5
O8 C9 H9 H9A 116.6 120.3
H9 C9 C10 C11 60.2 359.0
C10 C9 H9 H9A 243.4 239.8
H9 C9 C10 H10 180.2 119.1
H9 C9 C10 H10A 300.2 239.1
O8 C9 H9A C10 126.8 118.6
O8 C9 H9A H9 243.4 239.3
H9A C9 C10 C11 300.2 238.8
C10 C9 H9A H9 116.6 120.7
H9A C9 C10 H10 60.2 359.0
H9A C9 C10 H10A 180.2 119.0
C9 C10 H10 C11 237.2 239.9
H10 C10 C9 H9 180.2 119.1
H10 C10 C9 H9A 60.2 359.0
C9 C10 H10 H10A 118.6 120.0
H10 C10 C11 C12 171.0 191.3
C11 C10 H10 H10A 241.4 240.1
H10 C10 C11 H11 291.0 311.3
H10 C10 C11 H11A 51.0 71.1
C9 C10 H10A C11 122.8 119.9
H10A C10 C9 H9 300.2 239.1
H10A C10 C9 H9A 180.2 119.0
C9 C10 H10A H10 241.4 239.9
H10A C10 C11 C12 50.9 71.3
C11 C10 H10A H10 118.6 120.0
H10A C10 C11 H11 170.9 191.3
H10A C10 C11 H11A 291.0 311.0
C10 C11 H11 C12 237.8 240.0
H11 C11 C10 H10 291.0 311.3
H11 C11 C10 H10A 170.9 191.3
C10 C11 H11 H11A 118.9 119.9
H11 C11 C12 O13 327.6 97.5
C12 C11 H11 H11A 241.1 239.9
H11 C11 C12 H12 87.6 217.5
H11 C11 C12 H12A 207.6 337.5
C10 C11 H11A C12 122.2 120.2
H11A C11 C10 H10 51.0 71.1
H11A C11 C10 H10A 291.0 311.0
C10 C11 H11A H11 241.1 240.1
H11A C11 C12 O13 207.6 337.7
C12 C11 H11A H11 118.9 119.9
H11A C11 C12 H12 327.6 97.6
H11A C11 C12 H12A 87.6 217.6
C11 C12 H12 O13 245.8 239.4
H12 C12 C11 H11 87.6 217.5
H12 C12 C11 H11A 327.6 97.6
C11 C12 H12 H12A 122.9 119.9
H12 C12 O13 C14 73.3 108.9
O13 C12 H12 H12A 237.1 240.5
C11 C12 H12A O13 114.2 120.8
H12A C12 C11 H11 207.6 337.5
H12A C12 C11 H11A 87.6 217.6
C11 C12 H12A H12 237.1 240.3
H12A C12 O13 C14 313.3 349.0
O13 C12 H12A H12 122.9 119.6
H15 C15 C14 C16 182.9 174.4
C14 C15 H15 C19 180.0 183.3
H15 C15 C19 C18 176.3 185.9
H15 C15 C19 S20 359.4 6.9
C14 C16 H16 C17 180.0 180.0
H16 C16 C17 C18 183.1 180.3
H16 C16 C17 H17 3.1 359.9
C16 C17 H17 C18 180.0 180.4
H17 C17 C16 H16 3.1 359.9
H17 C17 C18 C19 176.3 180.3
H17 C17 C18 H18 356.3 1.3
C17 C18 H18 C19 180.0 179.0
H18 C18 C17 H17 356.3 1.3
H18 C18 C19 S20 1.1 356.7
C21 C23 H23 C24 180.0 176.9
H23 C23 C24 N25 180.1 175.6
C26 N27 HN27 HN2A 120.0 180.0
C26 N27 HN2A HN27 240.0 180.0