PDB Chemical Component VGM

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for VGM

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C01	O02	1.432	1.429
O02	C03	1.442	1.360
C03	C04	1.494	1.384
C03	C24	1.451	1.392
C04	C05	1.429	1.394
C05	C06	1.431	1.484
C05	C22	1.455	1.393
C06	C07	1.414	1.393
C06	C21	1.479	1.397
C07	N08	1.489	1.318
N08	C09	1.444	1.324
C09	N10	1.433	1.386
C09	C11	1.440	1.404
C11	C12	1.430	1.481
C11	C21	1.477	1.394
C12	C13	1.477	1.396
C12	C20	1.472	1.396
C13	C14	1.481	1.375
C14	C15	1.463	1.398
C15	C16	1.566	1.477
C15	C19	1.485	1.397
C16	N17	1.437	1.348
C16	O18	1.192	1.216
C19	C20	1.480	1.375
C22	C23	1.489	1.380
C23	C24	1.425	1.386
C24	O25	1.409	1.361
C01	H011	1.100	1.090
C01	H012	1.100	1.090
C01	H013	1.100	1.090
C04	H04	1.080	1.080
C22	H22	1.080	1.081
C07	H07	1.080	1.081
C21	H21	1.080	1.080
N10	H101	1.000	0.971
N10	H102	1.000	0.970
C13	H13	1.080	1.081
C20	H20	1.080	1.080
C14	H14	1.081	1.080
C19	H19	1.080	1.080
N17	H171	0.999	0.970
N17	H172	1.000	0.970
C23	H23	1.080	1.080
O25	H25	0.950	0.967

Bond Angles for VGM

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C01	O02	C03	120.3	117.0
O02	C01	H011	109.5	109.4
O02	C01	H012	109.5	109.5
O02	C01	H013	109.5	109.5
O02	C03	C04	121.1	120.0
O02	C03	C24	118.9	120.0
C04	C03	C24	119.9	120.0
C03	C04	C05	120.2	119.8
C03	C04	H04	119.9	120.1
C03	C24	C23	119.9	120.1
C03	C24	O25	119.6	119.9
C04	C05	C06	119.9	120.0
C04	C05	C22	119.5	119.9
C05	C04	H04	119.9	120.1
C06	C05	C22	120.5	120.0
C05	C06	C07	119.4	120.4
C05	C06	C21	121.9	120.4
C05	C22	C23	120.2	120.0
C05	C22	H22	119.9	120.0
C07	C06	C21	118.7	119.2
C06	C07	N08	120.9	121.0
C06	C07	H07	119.6	119.5
C06	C21	C11	120.6	118.3
C06	C21	H21	119.7	120.8
C07	N08	C09	120.5	121.9
N08	C07	H07	119.5	119.5
N08	C09	N10	118.9	119.7
N08	C09	C11	119.6	120.6
N10	C09	C11	121.5	119.7
C09	N10	H101	109.5	120.0
C09	N10	H102	109.4	120.1
C09	C11	C12	119.9	120.5
C09	C11	C21	119.8	119.0
C12	C11	C21	120.2	120.5
C11	C12	C13	118.6	120.0
C11	C12	C20	122.1	120.0
C11	C21	H21	119.7	120.9
C13	C12	C20	119.3	120.0
C12	C13	C14	120.8	120.1
C12	C13	H13	119.6	120.0
C12	C20	C19	119.8	120.0
C12	C20	H20	120.1	119.9
C13	C14	C15	120.2	119.9
C14	C13	H13	119.6	119.9
C13	C14	H14	119.9	120.1
C14	C15	C16	119.0	120.0
C14	C15	C19	119.1	120.0
C15	C14	H14	119.9	120.0
C16	C15	C19	121.9	120.0
C15	C16	N17	118.7	120.0
C15	C16	O18	122.4	120.0
C15	C19	C20	120.9	120.0
C15	C19	H19	119.6	120.0
N17	C16	O18	118.2	120.0
C16	N17	H171	106.3	120.0
C16	N17	H172	126.8	120.0
C19	C20	H20	120.1	120.1
C20	C19	H19	119.6	120.0
C22	C23	C24	120.2	120.1
C23	C22	H22	119.9	120.0
C22	C23	H23	119.9	120.0
C23	C24	O25	120.5	120.0
C24	C23	H23	119.9	119.9
C24	O25	H25	109.5	114.0
H011	C01	H012	109.5	109.5
H011	C01	H013	109.4	109.5
H012	C01	H013	109.5	109.5
H101	N10	H102	109.5	120.0
H171	N17	H172	126.9	120.0

Torsion Angles for VGM

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C01	O02	C03	C04	119.5	0.0
C01	O02	C03	C24	300.1	179.8
H011	C01	O02	H012	240.0	240.0
H011	C01	O02	H013	120.0	120.0
H012	C01	O02	H013	240.0	240.0
C03	O02	C01	H011	354.9	180.0
C03	O02	C01	H012	115.0	300.0
C03	O02	C01	H013	235.0	60.0
C04	C03	O02	C24	179.4	180.3
O02	C03	C04	C05	179.8	180.0
O02	C03	C04	H04	359.8	359.9
O02	C03	C24	C23	179.2	179.7
O02	C03	C24	O25	358.5	360.0
O02	C03	C04	C24	180.6	179.7
C04	C03	C24	C23	359.8	359.5
C04	C03	C24	O25	179.1	179.7
C03	C04	C05	C06	177.9	180.0
C03	C04	C05	C22	1.6	359.9
C05	C04	C03	H04	180.0	180.1
O02	C03	C24	C04	179.4	180.3
C24	C03	C04	C05	359.2	0.3
C24	C03	C04	H04	179.2	180.2
C22	C23	C24	C03	0.3	0.6
C23	C24	C03	O25	180.7	179.7
C03	C24	C23	H23	180.3	180.3
C03	C24	O25	H25	197.0	90.0
C05	C04	C03	C24	359.2	0.3
C03	C04	C05	H04	180.0	179.9
C06	C05	C04	C22	176.3	180.1
C04	C05	C06	C07	1.2	360.0
C04	C05	C06	C21	184.4	179.7
C04	C05	C22	C23	358.5	0.1
C04	C05	C22	H22	178.5	180.0
C04	C05	C06	C22	183.8	179.9
C06	C05	C04	H04	357.9	0.1
C06	C05	C22	C23	182.3	180.0
C06	C05	C22	H22	2.3	359.9
C07	C06	C05	C21	176.7	180.3
C05	C06	C07	N08	183.3	180.0
C05	C06	C07	H07	3.3	360.0
C05	C06	C21	C11	177.4	179.7
C05	C06	C21	H21	357.4	0.0
C04	C05	C22	C06	176.2	180.1
C22	C05	C04	H04	181.6	180.0
C22	C05	C06	C07	177.4	180.0
C22	C05	C06	C21	0.6	359.8
C05	C22	C23	C24	0.5	359.7
C23	C22	C05	H22	180.0	180.1
C05	C22	C23	H23	180.5	179.9
C07	C06	C05	C22	177.4	180.0
C05	C06	C07	C21	183.1	179.7
C07	C06	C21	C11	0.6	359.5
C07	C06	C21	H21	180.6	179.8
C06	C07	N08	C09	359.4	0.0
N08	C07	C06	H07	180.0	180.0
C21	C06	C05	C22	0.6	359.8
C05	C06	C21	C07	176.8	180.3
C21	C06	C07	N08	0.2	0.3
C21	C06	C07	H07	180.2	180.2
C09	C11	C21	C06	358.9	0.5
C12	C11	C21	C06	180.8	180.3
C11	C21	C06	H21	180.0	179.7
N08	C07	C06	C21	0.2	0.3
C06	C07	N08	H07	180.0	180.0
C07	N08	C09	N10	180.7	180.0
C07	N08	C09	C11	0.1	359.9
C09	N08	C07	H07	179.4	180.1
N10	C09	N08	C11	180.6	180.1
N08	C09	N10	H101	342.0	360.0
N08	C09	N10	H102	102.0	180.0
N08	C09	C11	C12	178.8	180.0
N08	C09	C11	C21	0.7	359.8
N08	C09	N10	C11	179.4	179.9
N10	C09	C11	C12	358.2	359.9
N10	C09	C11	C21	180.1	179.7
H101	N10	C09	H102	240.0	180.0
C06	C21	C11	C09	358.9	0.5
N08	C09	C11	N10	180.6	180.1
C11	C09	N10	H101	162.6	180.1
C11	C09	N10	H102	282.6	0.1
C12	C11	C09	C21	178.1	180.2
C09	C11	C12	C13	221.9	310.1
C09	C11	C12	C20	42.6	129.8
C09	C11	C21	H21	178.9	180.2
C06	C21	C11	C12	180.8	180.3
C09	C11	C12	C21	181.9	179.8
C12	C11	C21	H21	0.8	0.0
C13	C12	C11	C20	179.3	180.3
C11	C12	C13	C14	180.8	180.0
C11	C12	C13	H13	0.8	359.9
C11	C12	C20	C19	179.3	179.8
C11	C12	C20	H20	359.3	0.1
C06	C21	C11	H21	180.0	180.3
C09	C11	C21	C12	178.1	180.2
C21	C11	C12	C13	40.0	130.3
C21	C11	C12	C20	220.7	309.9
C13	C12	C11	C21	40.0	130.3
C11	C12	C13	C20	180.7	179.7
C13	C12	C20	C19	359.9	359.4
C13	C12	C20	H20	179.9	179.8
C12	C13	C14	C15	359.9	359.9
C14	C13	C12	H13	180.0	180.1
C12	C13	C14	H14	179.9	180.0
C20	C12	C11	C21	220.7	309.9
C11	C12	C20	C13	179.3	180.3
C20	C12	C13	C14	0.2	0.3
C20	C12	C13	H13	180.2	180.3
C15	C19	C20	C12	359.9	0.6
C19	C20	C12	H20	180.0	179.7
C12	C20	C19	H19	179.9	180.3
C14	C13	C12	C20	0.2	0.3
C12	C13	C14	H13	180.0	179.9
C13	C14	C15	C16	179.3	180.0
C13	C14	C15	C19	359.9	0.0
C15	C14	C13	H14	180.0	180.0
C15	C14	C13	H13	179.9	180.0
C13	C14	C15	H14	180.0	180.0
C16	C15	C14	C19	179.4	180.0
C14	C15	C16	N17	340.8	180.0
C14	C15	C16	O18	170.5	360.0
C14	C15	C19	C20	0.2	359.7
C14	C15	C19	H19	180.1	180.0
C14	C15	C16	C19	180.6	180.0
C16	C15	C14	H14	359.3	0.0
C16	C15	C19	C20	180.8	179.7
C16	C15	C19	H19	0.7	0.0
N17	C16	C15	O18	170.3	180.0
C15	C16	N17	H171	180.0	359.9
C15	C16	N17	H172	360.0	180.0
C12	C20	C19	C15	359.9	0.6
C14	C15	C19	C16	179.4	180.0
C19	C15	C14	H14	179.9	180.0
C19	C15	C16	N17	160.3	0.0
C19	C15	C16	O18	350.0	180.0
C15	C19	C20	H20	179.9	180.2
C20	C19	C15	H19	180.0	179.7
N17	C16	C15	C19	160.3	0.0
C15	C16	N17	O18	189.3	180.0
H171	N17	C16	H172	180.0	179.9
O18	C16	C15	C19	350.0	180.0
C15	C16	O18	N17	170.3	180.0
O18	C16	N17	H171	350.7	180.0
O18	C16	N17	H172	170.7	0.1
C12	C20	C19	H20	180.0	180.3
C15	C19	C20	H19	180.0	180.3
C03	C24	C23	C22	0.3	0.6
C05	C22	C23	H22	180.0	179.9
C22	C23	C24	O25	181.1	180.3
C24	C23	C22	H23	180.0	179.8
C03	C24	C23	O25	179.3	180.3
C24	C23	C22	H22	180.5	179.7
C22	C23	C24	H23	180.0	180.2
C23	C24	O25	H25	16.3	270.3
C03	C24	O25	C23	180.7	179.7
O25	C24	C23	H23	1.1	0.1
H011	C01	O02	C03	354.9	180.0
O02	C01	H011	H012	120.0	120.0
O02	C01	H011	H013	240.0	240.0
H012	C01	H011	H013	120.0	120.0
H012	C01	O02	C03	115.0	300.0
O02	C01	H012	H011	240.0	240.0
O02	C01	H012	H013	120.0	120.0
H011	C01	H012	H013	240.0	240.0
H013	C01	O02	C03	235.0	60.0
O02	C01	H013	H011	120.0	120.0
O02	C01	H013	H012	240.0	240.0
H011	C01	H013	H012	120.0	120.0
H04	C04	C03	C24	179.2	180.2
C03	C04	H04	C05	180.0	180.1
H04	C04	C05	C06	357.9	0.1
H04	C04	C05	C22	181.6	180.0
C05	C22	H22	C23	180.0	180.1
H22	C22	C23	C24	180.5	179.7
H22	C22	C23	H23	0.5	360.0
H07	C07	C06	C21	180.2	180.2
C06	C07	H07	N08	180.0	180.0
H07	C07	N08	C09	179.4	180.1
C06	C21	H21	C11	180.0	179.7
H101	N10	C09	C11	162.6	180.1
C09	N10	H101	H102	120.0	180.0
H102	N10	C09	C11	282.6	0.1
C09	N10	H102	H101	240.0	180.0
H13	C13	C12	C20	180.2	180.3
C12	C13	H13	C14	180.0	180.1
H13	C13	C14	C15	179.9	180.0
H13	C13	C14	H14	359.9	0.0
C12	C20	H20	C19	180.0	179.7
H20	C20	C19	H19	359.9	359.9
C13	C14	H14	C15	180.0	180.0
H14	C14	C13	H13	359.9	0.0
H14	C14	C15	C16	359.3	0.0
H14	C14	C15	C19	179.9	180.0
C15	C19	H19	C20	180.0	179.7
H19	C19	C20	H20	359.9	359.9
H171	N17	C16	O18	350.7	180.0
C16	N17	H171	H172	180.0	180.1
H172	N17	C16	O18	170.7	0.1
C16	N17	H172	H171	180.1	179.9
C22	C23	H23	C24	180.0	179.8
H23	C23	C22	H22	0.5	360.0
H23	C23	C24	O25	1.1	0.1