PDB Chemical Component VGD
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for VGD
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CLA |
CAH |
1.788 |
1.736 |
| CAH |
CAC |
1.392 |
1.387 |
| CAH |
CAE |
1.400 |
1.381 |
| CAC |
CAD |
1.393 |
1.378 |
| CAD |
CAK |
1.391 |
1.396 |
| CAK |
CAJ |
1.411 |
1.405 |
| CAK |
NAG |
1.351 |
1.360 |
| CAJ |
CAE |
1.395 |
1.386 |
| CAJ |
NAF |
1.350 |
1.386 |
| NAG |
CAI |
1.345 |
1.310 |
| CAI |
NAF |
1.341 |
1.365 |
| CAI |
NAA |
1.362 |
1.379 |
| CAC |
HAC |
1.080 |
1.080 |
| CAD |
HAD |
1.080 |
1.080 |
| CAE |
HAE |
1.080 |
1.080 |
| NAF |
HNAF |
1.000 |
0.969 |
| NAA |
HNAA |
1.000 |
0.970 |
| NAA |
HNAB |
1.000 |
0.970 |
Bond Angles for VGD
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CLA |
CAH |
CAC |
118.4 |
119.8 |
| CLA |
CAH |
CAE |
121.1 |
119.8 |
| CAC |
CAH |
CAE |
120.5 |
120.4 |
| CAH |
CAC |
CAD |
120.9 |
120.5 |
| CAH |
CAC |
HAC |
119.6 |
119.8 |
| CAH |
CAE |
CAJ |
118.9 |
119.8 |
| CAH |
CAE |
HAE |
120.5 |
120.1 |
| CAC |
CAD |
CAK |
119.0 |
119.8 |
| CAD |
CAC |
HAC |
119.5 |
119.8 |
| CAC |
CAD |
HAD |
120.5 |
120.1 |
| CAD |
CAK |
CAJ |
120.4 |
119.5 |
| CAD |
CAK |
NAG |
130.5 |
133.4 |
| CAK |
CAD |
HAD |
120.5 |
120.1 |
| CAJ |
CAK |
NAG |
109.0 |
107.1 |
| CAK |
CAJ |
CAE |
120.2 |
120.0 |
| CAK |
CAJ |
NAF |
108.0 |
106.1 |
| CAK |
NAG |
CAI |
103.5 |
109.6 |
| CAE |
CAJ |
NAF |
131.8 |
133.9 |
| CAJ |
CAE |
HAE |
120.5 |
120.1 |
| CAJ |
NAF |
CAI |
104.3 |
107.2 |
| CAJ |
NAF |
HNAF |
127.9 |
126.4 |
| NAG |
CAI |
NAF |
115.2 |
109.9 |
| NAG |
CAI |
NAA |
122.3 |
125.0 |
| NAF |
CAI |
NAA |
122.5 |
125.1 |
| CAI |
NAF |
HNAF |
127.9 |
126.4 |
| CAI |
NAA |
HNAA |
109.5 |
120.0 |
| CAI |
NAA |
HNAB |
109.5 |
120.0 |
| HNAA |
NAA |
HNAB |
109.5 |
120.0 |
Torsion Angles for VGD
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CAC |
CAH |
CLA |
CAE |
180.0 |
180.3 |
| CLA |
CAH |
CAC |
CAD |
180.0 |
180.0 |
| CLA |
CAH |
CAC |
HAC |
360.0 |
0.0 |
| CLA |
CAH |
CAE |
CAJ |
180.1 |
179.8 |
| CLA |
CAH |
CAE |
HAE |
0.1 |
0.1 |
| CLA |
CAH |
CAC |
CAE |
180.0 |
179.7 |
| CAC |
CAH |
CAE |
CAJ |
0.1 |
359.5 |
| CAC |
CAH |
CAE |
HAE |
180.1 |
179.8 |
| CAH |
CAC |
CAD |
CAK |
360.0 |
360.0 |
| CAD |
CAC |
CAH |
HAC |
180.0 |
180.0 |
| CAH |
CAC |
CAD |
HAD |
180.0 |
180.0 |
| CLA |
CAH |
CAE |
CAC |
180.0 |
180.3 |
| CAE |
CAH |
CAC |
CAD |
360.0 |
0.3 |
| CAE |
CAH |
CAC |
HAC |
180.0 |
180.3 |
| CAK |
CAJ |
CAE |
CAH |
359.9 |
0.5 |
| CAH |
CAE |
CAJ |
NAF |
179.9 |
180.2 |
| CAJ |
CAE |
CAH |
HAE |
180.0 |
179.7 |
| CAD |
CAC |
CAH |
CAE |
360.0 |
0.3 |
| CAH |
CAC |
CAD |
HAC |
180.0 |
180.0 |
| CAC |
CAD |
CAK |
CAJ |
360.0 |
0.0 |
| CAC |
CAD |
CAK |
NAG |
180.5 |
180.0 |
| CAK |
CAD |
CAC |
HAD |
180.0 |
179.9 |
| CAK |
CAD |
CAC |
HAC |
180.0 |
179.9 |
| CAC |
CAD |
CAK |
HAD |
180.0 |
180.1 |
| CAJ |
CAK |
CAD |
NAG |
179.5 |
180.0 |
| CAD |
CAK |
CAJ |
CAE |
0.1 |
359.7 |
| CAD |
CAK |
CAJ |
NAF |
180.1 |
180.0 |
| CAD |
CAK |
NAG |
CAI |
180.3 |
180.0 |
| CAH |
CAE |
CAJ |
CAK |
359.9 |
0.5 |
| CAD |
CAK |
CAJ |
NAG |
180.4 |
180.0 |
| CAJ |
CAK |
CAD |
HAD |
180.0 |
180.0 |
| CAJ |
CAK |
NAG |
CAI |
0.8 |
360.0 |
| CAE |
CAJ |
CAK |
NAF |
180.0 |
179.7 |
| CAK |
CAJ |
CAE |
HAE |
179.8 |
180.2 |
| CAK |
CAJ |
NAF |
CAI |
359.7 |
0.0 |
| CAK |
CAJ |
NAF |
HNAF |
179.7 |
180.0 |
| CAD |
CAK |
NAG |
CAJ |
179.5 |
180.0 |
| NAG |
CAK |
CAD |
HAD |
0.5 |
359.9 |
| NAG |
CAK |
CAJ |
CAE |
179.7 |
179.8 |
| NAG |
CAK |
CAJ |
NAF |
359.7 |
0.0 |
| CAK |
NAG |
CAI |
NAF |
358.9 |
0.0 |
| CAK |
NAG |
CAI |
NAA |
180.0 |
180.0 |
| CAH |
CAE |
CAJ |
HAE |
180.0 |
180.3 |
| CAE |
CAJ |
CAK |
NAG |
179.7 |
179.8 |
| CAK |
CAJ |
CAE |
NAF |
180.0 |
180.4 |
| CAE |
CAJ |
NAF |
CAI |
179.7 |
180.3 |
| CAE |
CAJ |
NAF |
HNAF |
359.6 |
0.4 |
| NAF |
CAJ |
CAK |
NAG |
359.7 |
0.0 |
| CAK |
CAJ |
NAF |
CAE |
180.0 |
179.7 |
| NAF |
CAJ |
CAE |
HAE |
359.9 |
359.9 |
| NAG |
CAI |
NAF |
CAJ |
0.9 |
360.0 |
| CAJ |
NAF |
CAI |
NAA |
179.8 |
180.0 |
| CAI |
NAF |
CAJ |
HNAF |
180.0 |
180.0 |
| CAJ |
NAF |
CAI |
NAG |
0.9 |
360.0 |
| NAF |
CAI |
NAG |
NAA |
178.9 |
180.0 |
| NAG |
CAI |
NAF |
HNAF |
180.9 |
179.9 |
| NAG |
CAI |
NAA |
HNAA |
233.7 |
0.1 |
| NAG |
CAI |
NAA |
HNAB |
353.7 |
180.1 |
| CAJ |
NAF |
CAI |
HNAF |
180.0 |
180.0 |
| NAG |
CAI |
NAF |
NAA |
181.1 |
180.0 |
| NAF |
CAI |
NAA |
HNAA |
54.9 |
180.0 |
| NAF |
CAI |
NAA |
HNAB |
174.9 |
0.0 |
| NAG |
CAI |
NAA |
NAF |
178.8 |
180.1 |
| NAA |
CAI |
NAF |
HNAF |
359.8 |
360.0 |
| HNAA |
NAA |
CAI |
HNAB |
240.0 |
180.0 |
| HAC |
CAC |
CAH |
CAE |
180.0 |
180.3 |
| CAH |
CAC |
HAC |
CAD |
180.0 |
180.0 |
| HAC |
CAC |
CAD |
CAK |
180.0 |
179.9 |
| HAC |
CAC |
CAD |
HAD |
0.0 |
0.0 |
| CAC |
CAD |
HAD |
CAK |
180.0 |
179.9 |
| HAD |
CAD |
CAC |
HAC |
0.0 |
0.0 |
| HAD |
CAD |
CAK |
CAJ |
180.0 |
180.0 |
| HAD |
CAD |
CAK |
NAG |
0.5 |
359.9 |
| CAH |
CAE |
HAE |
CAJ |
180.0 |
179.7 |
| HAE |
CAE |
CAJ |
NAF |
359.9 |
359.9 |
| CAJ |
NAF |
HNAF |
CAI |
180.0 |
180.0 |
| HNAF |
NAF |
CAI |
NAA |
359.8 |
360.0 |
| CAI |
NAA |
HNAA |
HNAB |
120.0 |
180.0 |
| CAI |
NAA |
HNAB |
HNAA |
240.0 |
180.0 |