PDB Chemical Component VGC

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for VGC

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C15	C18	1.505	1.530
C15	C14	1.586	1.530
C18	C19	1.573	1.530
C19	C17	1.530	1.530
C17	C16	1.528	1.530
C16	C14	1.537	1.531
C14	C5	1.538	1.507
C5	C2	1.395	1.411
C5	C7	1.371	1.359
C2	S1	1.713	1.759
C2	C1	1.388	1.385
S1	C3	1.685	1.756
C3	C6	1.504	1.462
C3	C4	1.324	1.359
C6	O1	1.236	1.349
C6	O2	1.221	1.217
C4	C1	1.387	1.387
C1	N1	1.332	1.399
N1	C20	1.449	1.464
N1	C7	1.309	1.370
C7	C8	1.382	1.478
C8	C9	1.394	1.396
C8	C13	1.402	1.396
C9	C10	1.424	1.379
C10	C11	1.433	1.384
C11	C12	1.414	1.383
C12	C13	1.430	1.379
C15	H151	1.100	1.089
C15	H152	1.100	1.091
C18	H181	1.100	1.090
C18	H182	1.100	1.091
C14	H14	1.100	1.091
C19	H191	1.099	1.090
C19	H192	1.100	1.090
C17	H171	1.100	1.090
C17	H172	1.100	1.090
C16	H161	1.100	1.090
C16	H162	1.100	1.090
C4	H4	1.080	1.080
O1	H1	0.951	0.966
C20	H201	1.100	1.090
C20	H202	1.100	1.090
C20	H203	1.100	1.090
C9	H9	1.080	1.080
C13	H13	1.080	1.081
C10	H10	1.080	1.079
C11	H11	1.080	1.081
C12	H12	1.080	1.080

Bond Angles for VGC

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C18	C15	C14	107.2	109.5
C15	C18	C19	109.4	109.5
C18	C15	H151	110.2	109.5
C18	C15	H152	110.7	109.5
C15	C18	H181	109.5	109.4
C15	C18	H182	109.5	109.5
C15	C14	C16	105.1	109.5
C15	C14	C5	108.6	109.5
C14	C15	H151	110.2	109.5
C14	C15	H152	110.7	109.4
C15	C14	H14	112.5	109.4
C18	C19	C17	111.8	109.5
C19	C18	H181	109.5	109.5
C19	C18	H182	109.5	109.5
C18	C19	H191	108.7	109.5
C18	C19	H192	108.2	109.5
C19	C17	C16	111.6	109.5
C17	C19	H191	108.7	109.5
C17	C19	H192	108.2	109.4
C19	C17	H171	108.8	109.5
C19	C17	H172	108.3	109.5
C17	C16	C14	111.2	109.4
C16	C17	H171	108.8	109.5
C16	C17	H172	108.3	109.5
C17	C16	H161	108.9	109.5
C17	C16	H162	108.6	109.5
C16	C14	C5	108.5	109.4
C16	C14	H14	112.6	109.5
C14	C16	H161	108.9	109.4
C14	C16	H162	108.5	109.5
C14	C5	C2	122.8	126.1
C14	C5	C7	128.5	126.1
C5	C14	H14	109.4	109.5
C2	C5	C7	108.6	107.8
C5	C2	S1	145.4	142.4
C5	C2	C1	106.7	107.7
C5	C7	N1	104.8	109.0
C5	C7	C8	129.0	125.5
S1	C2	C1	107.8	109.9
C2	S1	C3	93.2	91.4
C2	C1	C4	114.0	113.4
C2	C1	N1	104.5	107.0
S1	C3	C6	123.1	124.9
S1	C3	C4	111.9	110.1
C6	C3	C4	124.9	125.0
C3	C6	O1	118.6	120.0
C3	C6	O2	118.3	120.0
C3	C4	C1	113.0	115.2
C3	C4	H4	123.5	122.4
O1	C6	O2	123.1	120.0
C6	O1	H1	109.5	114.0
C4	C1	N1	141.5	139.7
C1	C4	H4	123.5	122.4
C1	N1	C20	128.3	125.7
C1	N1	C7	115.4	108.6
C20	N1	C7	116.3	125.7
N1	C20	H201	109.5	109.5
N1	C20	H202	109.5	109.5
N1	C20	H203	109.5	109.5
N1	C7	C8	126.2	125.5
C7	C8	C9	122.6	120.2
C7	C8	C13	119.3	120.2
C9	C8	C13	118.1	119.7
C8	C9	C10	120.7	119.9
C8	C9	H9	119.7	120.1
C8	C13	C12	121.5	119.9
C8	C13	H13	119.2	120.0
C9	C10	C11	122.6	120.1
C10	C9	H9	119.6	120.0
C9	C10	H10	118.7	120.0
C10	C11	C12	115.3	120.3
C11	C10	H10	118.7	119.9
C10	C11	H11	122.3	119.8
C11	C12	C13	121.7	120.1
C12	C11	H11	122.3	119.9
C11	C12	H12	119.2	119.9
C12	C13	H13	119.2	120.1
C13	C12	H12	119.1	119.9
H151	C15	H152	107.7	109.5
H181	C18	H182	109.4	109.4
H191	C19	H192	111.3	109.5
H171	C17	H172	111.1	109.5
H161	C16	H162	110.8	109.5
H201	C20	H202	109.5	109.4
H201	C20	H203	109.4	109.4
H202	C20	H203	109.5	109.5

Torsion Angles for VGC

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C18	C15	C14	C16	291.5	300.0
C18	C15	C14	C5	175.6	180.1
C14	C15	C18	H151	240.0	240.0
C14	C15	C18	H152	120.9	120.0
C18	C15	C14	H14	54.4	60.0
C15	C18	C19	C17	304.8	300.0
C19	C18	C15	H181	240.0	239.9
C19	C18	C15	H182	120.1	120.0
C15	C18	C19	H191	64.8	60.0
C15	C18	C19	H192	185.8	180.0
H151	C15	C18	H152	240.9	240.0
H181	C18	C15	H182	240.1	240.1
C14	C15	C18	C19	64.4	60.0
C18	C15	C14	H151	120.0	120.1
C18	C15	C14	H152	239.1	240.0
C14	C15	C18	H181	184.4	180.0
C14	C15	C18	H182	304.3	300.0
C17	C16	C14	C15	63.7	60.0
C16	C14	C15	C5	115.9	120.0
C16	C14	C15	H14	237.1	240.0
C15	C14	C16	H161	303.8	300.0
C15	C14	C16	H162	183.1	180.0
C15	C14	C5	C2	44.1	60.0
C15	C14	C5	C7	225.3	239.7
C5	C14	C15	H14	121.2	120.0
H151	C15	C14	H152	119.1	120.0
C19	C18	C15	C14	64.4	60.0
C19	C18	C15	H151	184.4	180.0
C19	C18	C15	H152	303.5	300.0
C15	C18	C19	H181	120.0	120.0
C15	C18	C19	H182	240.0	240.0
C18	C19	C17	C16	49.5	60.0
C17	C19	C18	H191	240.0	240.0
C17	C19	C18	H192	119.0	120.0
C18	C19	C17	H171	169.5	180.0
C18	C19	C17	H172	290.3	300.0
H181	C18	C19	H182	120.0	120.0
H191	C19	C18	H192	239.0	240.0
C17	C19	C18	H181	184.8	180.0
C17	C19	C18	H182	64.8	60.0
C18	C19	C17	H191	120.0	120.0
C18	C19	C17	H192	241.0	240.0
C19	C17	C16	C14	304.2	300.0
C16	C17	C19	H171	240.0	240.0
C16	C17	C19	H172	119.1	120.0
C19	C17	C16	H161	64.2	59.9
C19	C17	C16	H162	184.9	180.0
H191	C19	C17	H192	121.0	120.0
H171	C17	C19	H172	239.1	240.0
C15	C14	C16	C17	63.7	60.0
C16	C17	C19	H191	289.5	300.0
C16	C17	C19	H192	168.5	180.0
C19	C17	C16	H171	120.0	120.0
C19	C17	C16	H172	240.9	240.0
C17	C16	C14	C5	179.7	180.0
C17	C16	C14	H14	300.9	300.0
C14	C16	C17	H161	240.0	240.1
C14	C16	C17	H162	119.3	120.0
H171	C17	C16	H172	120.9	120.0
H161	C16	C17	H162	239.3	239.9
C15	C14	C16	C5	244.1	240.0
C16	C14	C15	H151	171.5	180.0
C16	C14	C15	H152	52.4	60.0
C15	C14	C16	H14	122.8	120.0
C14	C16	C17	H171	184.2	180.0
C14	C16	C17	H172	63.3	60.0
C17	C16	C14	H161	120.0	120.0
C17	C16	C14	H162	240.7	240.0
C16	C14	C5	C2	290.4	300.0
C16	C14	C5	C7	111.7	119.7
C5	C14	C16	H14	238.8	240.0
H161	C16	C14	H162	120.7	120.0
C15	C14	C5	C16	113.7	120.0
C5	C14	C15	H151	55.6	60.0
C5	C14	C15	H152	296.5	300.0
C15	C14	C5	H14	236.9	240.0
C16	C14	C5	H14	123.2	120.0
C5	C14	C16	H161	59.7	60.0
C5	C14	C16	H162	299.0	300.0
C2	C5	C14	C7	178.7	180.3
C14	C5	C2	S1	1.8	359.9
C14	C5	C2	C1	179.3	180.0
C14	C5	C7	N1	180.3	179.8
C14	C5	C7	C8	358.1	359.9
C14	C5	C2	C7	181.0	179.7
C2	C5	C14	H14	167.2	180.0
C2	C5	C7	N1	1.4	359.6
C2	C5	C7	C8	179.2	179.7
S1	C2	C5	C1	182.5	179.9
C5	C2	S1	C3	178.9	180.1
C5	C2	C1	C4	180.7	180.0
C5	C2	C1	N1	1.4	360.0
C14	C5	C7	C2	178.9	180.3
C7	C5	C14	H14	348.4	359.7
C7	C5	C2	S1	180.7	180.2
C7	C5	C2	C1	358.2	0.3
C1	N1	C7	C5	359.5	0.4
C20	N1	C7	C5	178.4	180.2
N1	C7	C5	C8	182.2	179.9
C5	C7	C8	C9	131.6	135.0
C5	C7	C8	C13	311.7	314.8
S1	C2	C5	C7	180.7	180.2
C5	C2	S1	C1	177.5	180.1
S1	C2	C1	C4	359.2	0.0
S1	C2	C1	N1	179.9	180.0
C2	S1	C3	C6	181.0	180.1
C2	S1	C3	C4	358.3	0.0
C1	C2	C5	C7	358.2	0.3
C5	C2	C1	S1	181.5	179.9
C1	C2	S1	C3	1.4	360.0
C3	C4	C1	C2	359.6	360.0
C4	C1	C2	N1	179.3	180.0
C2	C1	C4	H4	179.6	180.0
C2	C1	N1	C20	180.7	180.0
C2	C1	N1	C7	359.4	359.8
C3	S1	C2	C1	1.4	360.0
C6	C3	S1	C4	182.6	180.0
S1	C3	C6	O1	177.7	359.9
S1	C3	C6	O2	0.6	180.0
S1	C3	C4	C1	1.5	360.0
S1	C3	C4	H4	181.5	180.0
S1	C3	C6	C4	177.0	179.9
C6	C3	C4	C1	178.8	179.9
C6	C3	C4	H4	358.8	360.0
O1	C6	C3	O2	177.2	179.9
C3	C6	O1	H1	183.0	180.0
C2	C1	C4	C3	359.6	360.0
S1	C3	C4	C6	182.7	180.0
C4	C3	C6	O1	0.7	180.0
C4	C3	C6	O2	183.6	0.0
C3	C4	C1	N1	178.5	180.0
C1	C4	C3	H4	180.0	180.0
O1	C6	C3	C4	0.7	180.0
C3	C6	O1	O2	183.0	180.1
O2	C6	C3	C4	183.6	0.0
C3	C6	O2	O1	177.0	179.9
O2	C6	O1	H1	360.0	360.0
C2	C1	C4	N1	181.1	180.0
C3	C4	C1	H4	180.0	180.0
C4	C1	N1	C20	1.7	0.0
C4	C1	N1	C7	180.4	179.8
C5	C7	N1	C1	359.5	0.4
C2	C1	N1	C4	179.0	180.0
N1	C1	C4	H4	358.5	359.9
C20	N1	C1	C7	181.3	180.3
C1	N1	C20	H201	134.6	90.0
C1	N1	C20	H202	254.6	210.0
C1	N1	C20	H203	14.6	330.0
C1	N1	C7	C8	181.6	180.3
C5	C7	N1	C20	178.4	180.2
C1	N1	C20	C7	178.7	179.7
C20	N1	C7	C8	0.5	0.0
H201	C20	N1	H202	240.0	240.0
H201	C20	N1	H203	120.0	120.0
H202	C20	N1	H203	240.0	240.0
C5	C7	N1	C8	177.9	180.1
C1	N1	C7	C20	181.1	180.3
C7	N1	C20	H201	315.9	270.3
C7	N1	C20	H202	75.9	30.3
C7	N1	C20	H203	195.9	150.3
N1	C7	C8	C9	309.0	315.1
N1	C7	C8	C13	129.0	134.9
C5	C7	C8	N1	182.6	179.9
C9	C8	C7	C13	180.0	180.2
C7	C8	C9	C10	179.1	180.0
C7	C8	C9	H9	359.1	360.0
C7	C8	C13	C12	178.1	179.7
C7	C8	C13	H13	358.1	360.0
C7	C8	C9	C13	180.0	179.8
C9	C8	C13	C12	358.2	359.5
C9	C8	C13	H13	178.2	179.7
C8	C9	C10	C11	3.1	0.0
C10	C9	C8	H9	180.0	180.0
C8	C9	C10	H10	183.1	180.0
C7	C8	C13	C9	180.0	180.2
C13	C8	C9	C10	359.1	0.3
C13	C8	C9	H9	179.1	180.2
C11	C12	C13	C8	2.6	0.5
C12	C13	C8	H13	180.0	179.7
C8	C13	C12	H12	182.6	180.3
C10	C9	C8	C13	359.1	0.3
C8	C9	C10	H9	180.0	180.0
C9	C10	C11	C12	357.7	359.9
C11	C10	C9	H10	180.0	180.1
C9	C10	C11	H11	177.7	180.0
C11	C10	C9	H9	183.1	180.1
C9	C10	C11	H10	180.0	179.9
C10	C11	C12	C13	359.5	359.8
C12	C11	C10	H11	180.0	180.0
C10	C11	C12	H12	179.5	180.0
C8	C13	C12	C11	2.6	0.5
C12	C11	C10	H10	177.7	180.0
C10	C11	C12	H11	180.0	180.0
C11	C12	C13	H13	182.6	180.3
C13	C12	C11	H12	180.0	179.7
C8	C13	C12	H13	180.0	180.3
C13	C12	C11	H11	179.5	179.7
C11	C12	C13	H12	180.0	180.3
C18	C15	H151	C14	241.8	240.0
H151	C15	C18	C19	184.4	180.0
C18	C15	H151	H152	120.9	120.0
H151	C15	C18	H181	304.4	300.0
H151	C15	C18	H182	64.4	60.0
H151	C15	C14	C16	171.5	180.0
H151	C15	C14	C5	55.6	60.0
C14	C15	H151	H152	239.1	240.1
H151	C15	C14	H14	294.4	300.0
C18	C15	H152	C14	118.8	120.0
H152	C15	C18	C19	303.5	300.0
C18	C15	H152	H151	239.4	239.9
H152	C15	C18	H181	63.5	60.1
H152	C15	C18	H182	183.5	180.0
H152	C15	C14	C16	52.4	60.0
H152	C15	C14	C5	296.5	300.0
C14	C15	H152	H151	120.6	120.0
H152	C15	C14	H14	175.3	180.0
H181	C18	C15	C14	184.4	180.0
C15	C18	H181	C19	240.1	239.9
H181	C18	C15	H151	304.4	300.0
H181	C18	C15	H152	63.5	60.1
C15	C18	H181	H182	120.0	120.0
H181	C18	C19	C17	184.8	180.0
C19	C18	H181	H182	239.9	240.0
H181	C18	C19	H191	304.8	300.0
H181	C18	C19	H192	65.8	60.0
H182	C18	C15	C14	304.3	300.0
C15	C18	H182	C19	119.9	120.0
H182	C18	C15	H151	64.4	60.0
H182	C18	C15	H152	183.5	180.0
C15	C18	H182	H181	240.0	240.1
H182	C18	C19	C17	64.8	60.0
C19	C18	H182	H181	120.1	120.0
H182	C18	C19	H191	184.9	180.0
H182	C18	C19	H192	305.8	300.1
C15	C14	H14	C16	241.4	240.0
C15	C14	H14	C5	120.7	120.0
H14	C14	C15	H151	294.4	300.0
H14	C14	C15	H152	175.3	180.0
C16	C14	H14	C5	239.3	240.0
H14	C14	C16	H161	180.9	180.0
H14	C14	C16	H162	60.2	60.0
H14	C14	C5	C2	167.2	180.0
H14	C14	C5	C7	348.4	359.7
C18	C19	H191	C17	238.1	240.0
H191	C19	C18	H181	304.8	300.0
H191	C19	C18	H182	184.9	180.0
C18	C19	H191	H192	119.0	120.1
H191	C19	C17	C16	289.5	300.0
C17	C19	H191	H192	240.9	240.0
H191	C19	C17	H171	49.5	60.0
H191	C19	C17	H172	170.3	180.0
C18	C19	H192	C17	121.3	120.0
H192	C19	C18	H181	65.8	60.0
H192	C19	C18	H182	305.8	300.1
C18	C19	H192	H191	240.7	240.0
H192	C19	C17	C16	168.5	180.0
C17	C19	H192	H191	119.4	120.0
H192	C19	C17	H171	288.5	300.0
H192	C19	C17	H172	49.4	60.0
C19	C17	H171	C16	238.3	240.0
H171	C17	C19	H191	49.5	60.0
H171	C17	C19	H192	288.5	300.0
C19	C17	H171	H172	119.1	120.0
H171	C17	C16	C14	184.2	180.0
C16	C17	H171	H172	240.8	240.0
H171	C17	C16	H161	304.2	299.9
H171	C17	C16	H162	64.9	60.0
C19	C17	H172	C16	121.2	120.0
H172	C17	C19	H191	170.3	180.0
H172	C17	C19	H192	49.4	60.0
C19	C17	H172	H171	240.6	240.0
H172	C17	C16	C14	63.3	60.0
C16	C17	H172	H171	119.4	120.0
H172	C17	C16	H161	183.3	179.9
H172	C17	C16	H162	304.0	300.0
C17	C16	H161	C14	238.6	240.1
H161	C16	C17	H171	304.2	299.9
H161	C16	C17	H172	183.3	179.9
C17	C16	H161	H162	119.3	120.1
H161	C16	C14	C5	59.7	60.0
H161	C16	C14	H14	180.9	180.0
C14	C16	H161	H162	240.7	240.0
C17	C16	H162	C14	120.9	120.0
H162	C16	C17	H171	64.9	60.0
H162	C16	C17	H172	304.0	300.0
C17	C16	H162	H161	240.5	239.9
H162	C16	C14	C5	299.0	300.0
H162	C16	C14	H14	60.2	60.0
C14	C16	H162	H161	119.5	119.9
C3	C4	H4	C1	180.0	180.0
H4	C4	C1	N1	358.5	359.9
H1	O1	C6	O2	360.0	360.0
H201	C20	N1	C7	315.9	270.3
N1	C20	H201	H202	120.0	120.0
N1	C20	H201	H203	240.0	240.0
H202	C20	H201	H203	120.0	120.0
H202	C20	N1	C7	75.9	30.3
N1	C20	H202	H201	239.9	240.0
N1	C20	H202	H203	120.0	120.0
H201	C20	H202	H203	240.0	240.0
H203	C20	N1	C7	195.9	150.3
N1	C20	H203	H201	120.0	120.0
N1	C20	H203	H202	240.0	240.0
H201	C20	H203	H202	120.0	119.9
H9	C9	C8	C13	179.1	180.2
C8	C9	H9	C10	180.0	180.0
H9	C9	C10	C11	183.1	180.1
H9	C9	C10	H10	3.1	360.0
C8	C13	H13	C12	180.0	179.7
H13	C13	C12	H12	2.6	0.0
C9	C10	H10	C11	180.0	180.1
H10	C10	C9	H9	3.1	360.0
H10	C10	C11	C12	177.7	180.0
H10	C10	C11	H11	357.7	0.0
C10	C11	H11	C12	180.0	180.0
H11	C11	C10	H10	357.7	0.0
H11	C11	C12	C13	179.5	179.7
H11	C11	C12	H12	359.5	0.0
C11	C12	H12	C13	180.0	179.7
H12	C12	C11	H11	359.5	0.0
H12	C12	C13	H13	2.6	0.0