PDB Chemical Component VF1
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for VF1
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
CAA |
OAT |
1.433 |
1.429 |
OAT |
CBE |
1.453 |
1.428 |
CAJ |
CAH |
1.390 |
1.382 |
CAJ |
CAV |
1.392 |
1.383 |
CAC |
CBC |
1.539 |
1.530 |
CBE |
CAF |
1.514 |
1.503 |
CBE |
CBC |
1.519 |
1.550 |
CBE |
CBA |
1.550 |
1.549 |
CAH |
CAG |
1.390 |
1.383 |
CAY |
CBC |
1.525 |
1.581 |
CAY |
CAV |
1.546 |
1.507 |
CAY |
NAS |
1.482 |
1.477 |
CAF |
CAE |
1.506 |
1.331 |
CBC |
CAR |
1.564 |
1.540 |
CAV |
CAK |
1.391 |
1.383 |
NAS |
CBA |
1.490 |
1.489 |
CBA |
CBF |
1.544 |
1.531 |
OAD |
CAU |
1.363 |
1.359 |
CAG |
CAI |
1.391 |
1.382 |
CAN |
CAU |
1.389 |
1.385 |
CAN |
CAX |
1.392 |
1.385 |
CAE |
CBD |
1.546 |
1.534 |
CAU |
CAL |
1.387 |
1.388 |
CAK |
CAI |
1.390 |
1.382 |
CAR |
CBD |
1.523 |
1.526 |
CBF |
CAX |
1.418 |
1.505 |
CBF |
CBD |
1.511 |
1.532 |
CBF |
CAP |
1.541 |
1.535 |
CAX |
CAW |
1.407 |
1.379 |
CBD |
CAZ |
1.520 |
1.519 |
CAL |
CAM |
1.391 |
1.378 |
CAP |
CAO |
1.542 |
1.532 |
CAW |
CAM |
1.391 |
1.391 |
CAW |
CAQ |
1.417 |
1.504 |
CAZ |
CAQ |
1.561 |
1.522 |
CAZ |
NBB |
1.484 |
1.459 |
CAO |
NBB |
1.470 |
1.467 |
NBB |
CAB |
1.473 |
1.469 |
CAP |
H1 |
1.100 |
1.090 |
CAP |
H2 |
1.100 |
1.090 |
CAO |
H3 |
1.100 |
1.090 |
CAO |
H4 |
1.100 |
1.091 |
CAB |
H6 |
1.100 |
1.089 |
CAB |
H7 |
1.100 |
1.090 |
CAB |
H8 |
1.101 |
1.090 |
CAZ |
H9 |
1.101 |
1.089 |
CAQ |
H10 |
1.100 |
1.090 |
CAQ |
H11 |
1.100 |
1.090 |
CAM |
H12 |
1.081 |
1.079 |
CAL |
H13 |
1.079 |
1.079 |
OAD |
H14 |
0.950 |
0.967 |
CAN |
H15 |
1.080 |
1.080 |
CBA |
H16 |
1.100 |
1.090 |
NAS |
H17 |
1.000 |
1.010 |
CAA |
H19 |
1.100 |
1.090 |
CAA |
H20 |
1.100 |
1.090 |
CAA |
H21 |
1.100 |
1.090 |
CAF |
H22 |
1.080 |
1.079 |
CAE |
H24 |
1.080 |
1.080 |
CAR |
H26 |
1.100 |
1.090 |
CAR |
H27 |
1.101 |
1.090 |
CAC |
H28 |
1.100 |
1.090 |
CAC |
H29 |
1.100 |
1.090 |
CAC |
H30 |
1.100 |
1.090 |
CAY |
H31 |
1.100 |
1.091 |
CAJ |
H32 |
1.080 |
1.081 |
CAH |
H33 |
1.080 |
1.080 |
CAG |
H34 |
1.080 |
1.079 |
CAI |
H35 |
1.080 |
1.080 |
CAK |
H36 |
1.080 |
1.080 |
Bond Angles for VF1
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
OAT |
CBE |
CAF |
110.3 |
111.3 |
OAT |
CBE |
CBC |
110.3 |
111.2 |
CAJ |
CAH |
CAG |
119.8 |
120.0 |
CAH |
CAJ |
H32 |
119.7 |
120.0 |
CAJ |
CAH |
H33 |
120.1 |
120.0 |
CAJ |
CAV |
CAK |
119.3 |
120.0 |
CAF |
CBE |
CBC |
112.1 |
111.0 |
CBE |
CAF |
CAE |
108.6 |
115.6 |
CBE |
CAF |
H22 |
125.7 |
122.2 |
CBE |
CBC |
CAR |
110.5 |
109.6 |
CBE |
CBA |
H16 |
111.5 |
112.5 |
CAH |
CAG |
CAI |
119.8 |
120.0 |
CAG |
CAH |
H33 |
120.1 |
120.0 |
CAH |
CAG |
H34 |
120.1 |
120.0 |
CAY |
CAV |
CAK |
121.1 |
120.0 |
CAV |
CAY |
H31 |
107.9 |
109.9 |
CAY |
NAS |
H17 |
110.1 |
111.0 |
CAF |
CAE |
CBD |
111.6 |
111.8 |
CAE |
CAF |
H22 |
125.7 |
122.2 |
CAF |
CAE |
H24 |
124.2 |
124.1 |
CBC |
CAR |
H26 |
109.8 |
108.9 |
CBC |
CAR |
H27 |
109.8 |
110.8 |
CAV |
CAK |
CAI |
120.3 |
120.0 |
CAV |
CAK |
H36 |
119.9 |
120.0 |
NAS |
CBA |
H16 |
112.4 |
112.7 |
CBA |
CBF |
CBD |
107.2 |
109.9 |
CAI |
CAG |
H34 |
120.1 |
120.1 |
CAG |
CAI |
H35 |
119.9 |
120.0 |
CAX |
CAN |
H15 |
119.5 |
119.8 |
CBF |
CBD |
CAE |
111.5 |
107.3 |
CBD |
CAE |
H24 |
124.2 |
124.2 |
CAU |
CAL |
H13 |
119.8 |
120.0 |
CAK |
CAI |
H35 |
119.9 |
120.0 |
CBF |
CAP |
H1 |
109.1 |
109.7 |
CBF |
CAP |
H2 |
109.1 |
109.8 |
CBD |
CAZ |
H9 |
107.8 |
107.5 |
CAL |
CAM |
H12 |
119.9 |
119.7 |
CAP |
CAO |
NBB |
109.3 |
109.5 |
CAO |
CAP |
H1 |
109.1 |
109.8 |
CAO |
CAP |
H2 |
109.1 |
109.8 |
CAP |
CAO |
H3 |
109.5 |
109.5 |
CAP |
CAO |
H4 |
109.5 |
109.5 |
CAW |
CAM |
H12 |
119.9 |
119.6 |
CAW |
CAQ |
H10 |
108.1 |
108.9 |
CAW |
CAQ |
H11 |
108.1 |
108.8 |
CAQ |
CAZ |
H9 |
107.3 |
108.1 |
CAZ |
CAQ |
H10 |
108.1 |
108.9 |
CAZ |
CAQ |
H11 |
108.2 |
108.8 |
CAO |
NBB |
CAB |
111.3 |
111.0 |
NBB |
CAO |
H3 |
109.5 |
109.4 |
NBB |
CAO |
H4 |
109.5 |
109.5 |
NBB |
CAB |
H6 |
109.5 |
109.5 |
NBB |
CAB |
H7 |
109.5 |
109.4 |
NBB |
CAB |
H8 |
109.5 |
109.4 |
H1 |
CAP |
H2 |
109.5 |
109.7 |
H3 |
CAO |
H4 |
109.5 |
109.4 |
H6 |
CAB |
H7 |
109.5 |
109.5 |
H6 |
CAB |
H8 |
109.4 |
109.5 |
H7 |
CAB |
H8 |
109.5 |
109.5 |
H10 |
CAQ |
H11 |
109.5 |
108.8 |
H19 |
CAA |
H20 |
109.5 |
109.4 |
H19 |
CAA |
H21 |
109.5 |
109.5 |
H20 |
CAA |
H21 |
109.5 |
109.5 |
H26 |
CAR |
H27 |
109.5 |
109.6 |
H28 |
CAC |
H29 |
109.4 |
109.5 |
H28 |
CAC |
H30 |
109.5 |
109.5 |
H29 |
CAC |
H30 |
109.5 |
109.5 |
Torsion Angles for VF1
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
CAA |
OAT |
CBE |
CAF |
299.9 |
300.7 |
CAA |
OAT |
CBE |
CBC |
175.6 |
176.4 |
CAF |
CBE |
OAT |
CBC |
124.3 |
124.3 |
OAT |
CBE |
CAF |
CAE |
185.7 |
180.5 |
OAT |
CBE |
CAF |
H22 |
5.7 |
0.4 |
OAT |
CBE |
CBC |
CAR |
183.6 |
172.9 |
OAT |
CBE |
CBA |
H16 |
314.8 |
312.0 |
CAH |
CAJ |
CAV |
CAK |
359.2 |
0.3 |
CAJ |
CAH |
CAG |
CAI |
359.9 |
359.9 |
CAG |
CAH |
CAJ |
H33 |
180.0 |
180.1 |
CAJ |
CAH |
CAG |
H34 |
179.9 |
179.9 |
CAY |
CAV |
CAJ |
CAK |
180.6 |
179.7 |
CAJ |
CAV |
CAY |
H31 |
25.9 |
263.9 |
CAJ |
CAV |
CAK |
CAI |
0.7 |
359.5 |
CAJ |
CAV |
CAK |
H36 |
180.7 |
179.7 |
CAC |
CBC |
CAR |
H26 |
242.2 |
15.1 |
CAC |
CBC |
CAR |
H27 |
2.6 |
254.5 |
OAT |
CBE |
CAF |
CBC |
236.7 |
235.6 |
CAF |
CBE |
CBC |
CAR |
60.4 |
48.4 |
CAF |
CBE |
CBA |
H16 |
79.3 |
76.6 |
CBE |
CAF |
CAE |
CBD |
348.3 |
0.3 |
CAE |
CAF |
CBE |
H22 |
180.0 |
180.0 |
CBE |
CAF |
CAE |
H24 |
168.3 |
179.9 |
OAT |
CBE |
CBC |
CAF |
123.2 |
124.5 |
CBC |
CBE |
CAF |
CAE |
309.0 |
304.8 |
CBC |
CBE |
CAF |
H22 |
129.0 |
124.8 |
CBC |
CBE |
CBA |
H16 |
198.7 |
194.1 |
CBE |
CBC |
CAR |
H26 |
116.6 |
248.1 |
CBE |
CBC |
CAR |
H27 |
237.0 |
127.5 |
NAS |
CBA |
CBE |
H16 |
119.4 |
122.0 |
CBE |
CBA |
CBF |
CBD |
343.1 |
351.7 |
CAG |
CAH |
CAJ |
H32 |
180.5 |
180.0 |
CAJ |
CAH |
CAG |
H33 |
180.0 |
179.9 |
CAI |
CAG |
CAH |
H34 |
180.0 |
180.0 |
CAH |
CAG |
CAI |
H35 |
180.1 |
180.0 |
CBC |
CAY |
NAS |
H17 |
148.2 |
119.8 |
CAY |
CBC |
CAR |
H26 |
12.2 |
140.2 |
CAY |
CBC |
CAR |
H27 |
132.6 |
19.6 |
CAJ |
CAV |
CAY |
CAK |
179.4 |
180.3 |
CAV |
CAY |
NAS |
H17 |
271.8 |
239.2 |
CAY |
CAV |
CAK |
CAI |
180.1 |
179.8 |
CAY |
CAV |
CAK |
H36 |
0.1 |
360.0 |
CAY |
NAS |
CBA |
H16 |
126.8 |
150.6 |
CAE |
CAF |
CBE |
CBC |
309.0 |
304.8 |
CBE |
CAF |
CAE |
H22 |
180.0 |
180.0 |
CBF |
CBD |
CAE |
CAF |
308.5 |
300.8 |
CBD |
CAE |
CAF |
H24 |
180.0 |
180.4 |
H26 |
CAR |
CBC |
H27 |
239.6 |
120.6 |
CAK |
CAV |
CAY |
H31 |
206.5 |
83.6 |
CAV |
CAK |
CAI |
H35 |
179.6 |
180.3 |
CBE |
CBA |
NAS |
H16 |
241.2 |
238.1 |
NAS |
CBA |
CBF |
CBD |
93.1 |
102.6 |
CBA |
CBF |
CBD |
CAE |
66.1 |
61.7 |
CBA |
CBF |
CAP |
H1 |
293.5 |
62.1 |
CBA |
CBF |
CAP |
H2 |
53.1 |
301.4 |
OAD |
CAU |
CAL |
H13 |
0.0 |
0.5 |
CAI |
CAG |
CAH |
H33 |
179.9 |
180.0 |
CAH |
CAG |
CAI |
H34 |
180.0 |
180.0 |
CAV |
CAK |
CAI |
CAG |
359.6 |
0.4 |
CAK |
CAI |
CAG |
H35 |
180.0 |
179.8 |
CAN |
CAU |
CAL |
H13 |
180.1 |
180.5 |
CBD |
CAE |
CAF |
H22 |
168.3 |
180.4 |
CAF |
CAE |
CBD |
H24 |
180.0 |
179.6 |
CAE |
CBD |
CAZ |
H9 |
300.4 |
292.5 |
CAU |
CAL |
CAM |
H12 |
179.3 |
179.7 |
CAV |
CAK |
CAI |
H36 |
180.0 |
180.2 |
CAK |
CAI |
CAG |
H34 |
180.0 |
179.9 |
CAG |
CAI |
CAK |
H35 |
180.0 |
180.2 |
CBE |
CBC |
CAR |
CBD |
356.8 |
7.2 |
CAR |
CBD |
CAE |
H24 |
247.6 |
239.3 |
CAR |
CBD |
CAZ |
H9 |
59.7 |
54.5 |
CBF |
CAX |
CAN |
H15 |
0.0 |
357.7 |
CAX |
CBF |
CAP |
H1 |
56.7 |
184.0 |
CAX |
CBF |
CAP |
H2 |
176.3 |
63.3 |
CAF |
CAE |
CBD |
CBF |
308.5 |
300.8 |
CBF |
CBD |
CAE |
H24 |
128.5 |
121.2 |
CBD |
CBF |
CAP |
H1 |
176.9 |
302.3 |
CBD |
CBF |
CAP |
H2 |
296.4 |
181.6 |
CBF |
CBD |
CAZ |
H9 |
179.7 |
175.3 |
CAO |
CAP |
CBF |
H1 |
239.8 |
119.6 |
CAO |
CAP |
CBF |
H2 |
120.2 |
240.3 |
CBF |
CAP |
CAO |
H3 |
65.0 |
59.7 |
CBF |
CAP |
CAO |
H4 |
185.1 |
179.6 |
H1 |
CAP |
CBF |
H2 |
240.5 |
120.7 |
CAX |
CAW |
CAM |
H12 |
181.6 |
179.4 |
CAX |
CAW |
CAQ |
H10 |
116.8 |
228.4 |
CAX |
CAW |
CAQ |
H11 |
235.2 |
109.9 |
CAQ |
CAZ |
CBD |
H9 |
116.0 |
117.2 |
CBD |
CAZ |
CAQ |
H10 |
274.7 |
163.0 |
CBD |
CAZ |
CAQ |
H11 |
156.2 |
281.5 |
CAW |
CAM |
CAL |
H12 |
180.0 |
180.0 |
CBF |
CAP |
CAO |
H1 |
120.2 |
240.4 |
CBF |
CAP |
CAO |
H2 |
239.8 |
119.7 |
CAP |
CAO |
NBB |
CAB |
180.7 |
183.7 |
NBB |
CAO |
CAP |
H3 |
240.0 |
240.0 |
NBB |
CAO |
CAP |
H4 |
120.0 |
120.0 |
H1 |
CAP |
CAO |
H2 |
119.6 |
239.3 |
H3 |
CAO |
CAP |
H4 |
239.9 |
240.1 |
CAL |
CAM |
CAW |
H12 |
180.0 |
180.0 |
CAM |
CAW |
CAQ |
H10 |
299.1 |
48.9 |
CAM |
CAW |
CAQ |
H11 |
57.5 |
290.5 |
CAW |
CAQ |
CAZ |
H9 |
151.8 |
159.0 |
CAZ |
CAQ |
CAW |
H10 |
239.2 |
120.9 |
CAZ |
CAQ |
CAW |
H11 |
120.8 |
239.3 |
H10 |
CAQ |
CAW |
H11 |
241.6 |
118.4 |
CBD |
CAZ |
CAQ |
H9 |
243.7 |
243.2 |
CAW |
CAQ |
CAZ |
H10 |
120.8 |
239.1 |
CAW |
CAQ |
CAZ |
H11 |
239.2 |
120.7 |
H10 |
CAQ |
CAZ |
H11 |
118.4 |
241.6 |
CAZ |
NBB |
CAO |
H3 |
297.6 |
298.3 |
CAZ |
NBB |
CAO |
H4 |
177.5 |
178.4 |
CAZ |
NBB |
CAB |
H6 |
180.0 |
182.3 |
CAZ |
NBB |
CAB |
H7 |
300.0 |
302.3 |
CAZ |
NBB |
CAB |
H8 |
60.0 |
62.3 |
NBB |
CAO |
CAP |
H1 |
184.8 |
59.3 |
NBB |
CAO |
CAP |
H2 |
65.3 |
180.0 |
CAP |
CAO |
NBB |
H3 |
119.9 |
120.1 |
CAP |
CAO |
NBB |
H4 |
240.0 |
240.0 |
CAO |
NBB |
CAB |
H6 |
56.3 |
56.0 |
CAO |
NBB |
CAB |
H7 |
176.3 |
176.0 |
CAO |
NBB |
CAB |
H8 |
296.3 |
296.0 |
H3 |
CAO |
NBB |
H4 |
120.1 |
119.9 |
CAB |
NBB |
CAO |
H3 |
60.7 |
63.6 |
CAB |
NBB |
CAO |
H4 |
300.6 |
303.7 |
H6 |
CAB |
NBB |
H7 |
240.0 |
240.0 |
H6 |
CAB |
NBB |
H8 |
120.0 |
120.0 |
H7 |
CAB |
NBB |
H8 |
240.0 |
240.0 |
CBF |
CAP |
H1 |
H2 |
119.3 |
239.3 |
H1 |
CAP |
CAO |
NBB |
184.8 |
59.3 |
CAO |
CAP |
H1 |
H2 |
240.7 |
120.7 |
H1 |
CAP |
CAO |
H3 |
304.8 |
179.3 |
H1 |
CAP |
CAO |
H4 |
64.9 |
299.2 |
CBF |
CAP |
H2 |
H1 |
240.7 |
120.7 |
H2 |
CAP |
CAO |
NBB |
65.3 |
180.0 |
CAO |
CAP |
H2 |
H1 |
119.3 |
239.3 |
H2 |
CAP |
CAO |
H3 |
185.3 |
300.0 |
H2 |
CAP |
CAO |
H4 |
305.3 |
59.9 |
CAP |
CAO |
H3 |
NBB |
240.2 |
239.9 |
H3 |
CAO |
CAP |
H1 |
304.8 |
179.3 |
H3 |
CAO |
CAP |
H2 |
185.3 |
300.0 |
CAP |
CAO |
H3 |
H4 |
120.1 |
120.0 |
H3 |
CAO |
NBB |
CAB |
60.7 |
63.6 |
NBB |
CAO |
H3 |
H4 |
239.9 |
240.0 |
CAP |
CAO |
H4 |
NBB |
119.8 |
120.1 |
H4 |
CAO |
CAP |
H1 |
64.9 |
299.2 |
H4 |
CAO |
CAP |
H2 |
305.3 |
59.9 |
CAP |
CAO |
H4 |
H3 |
239.9 |
240.0 |
H4 |
CAO |
NBB |
CAB |
300.6 |
303.7 |
NBB |
CAO |
H4 |
H3 |
120.1 |
119.9 |
NBB |
CAB |
H6 |
H7 |
120.0 |
120.0 |
NBB |
CAB |
H6 |
H8 |
240.0 |
240.1 |
H7 |
CAB |
H6 |
H8 |
120.0 |
120.1 |
NBB |
CAB |
H7 |
H6 |
239.9 |
240.0 |
NBB |
CAB |
H7 |
H8 |
120.0 |
119.9 |
H6 |
CAB |
H7 |
H8 |
240.0 |
239.9 |
NBB |
CAB |
H8 |
H6 |
120.0 |
120.0 |
NBB |
CAB |
H8 |
H7 |
240.0 |
240.1 |
H6 |
CAB |
H8 |
H7 |
120.0 |
120.1 |
H9 |
CAZ |
CAQ |
H10 |
31.0 |
279.8 |
H9 |
CAZ |
CAQ |
H11 |
272.5 |
38.3 |
CAW |
CAQ |
H10 |
H11 |
117.6 |
241.6 |
H10 |
CAQ |
CAZ |
H9 |
31.0 |
279.8 |
CAZ |
CAQ |
H10 |
H11 |
242.4 |
118.5 |
CAW |
CAQ |
H11 |
H10 |
242.4 |
118.5 |
H11 |
CAQ |
CAZ |
H9 |
272.5 |
38.3 |
CAZ |
CAQ |
H11 |
H10 |
117.6 |
241.5 |
H13 |
CAL |
CAM |
H12 |
359.3 |
359.7 |
H16 |
CBA |
CBF |
CBD |
218.2 |
226.7 |
H17 |
NAS |
CBA |
H16 |
7.2 |
28.7 |
H20 |
CAA |
H19 |
H21 |
120.0 |
120.0 |
H19 |
CAA |
H20 |
H21 |
240.0 |
240.0 |
H19 |
CAA |
H21 |
H20 |
120.0 |
120.0 |
H22 |
CAF |
CBE |
CBC |
129.0 |
124.8 |
CBE |
CAF |
H22 |
CAE |
180.0 |
180.0 |
H22 |
CAF |
CAE |
CBD |
168.3 |
180.4 |
H22 |
CAF |
CAE |
H24 |
348.3 |
360.0 |
CAF |
CAE |
H24 |
CBD |
180.0 |
180.4 |
H24 |
CAE |
CAF |
H22 |
348.3 |
360.0 |
CBC |
CAR |
H26 |
H27 |
120.6 |
238.7 |
CBC |
CAR |
H27 |
H26 |
239.4 |
120.2 |
H29 |
CAC |
H28 |
H30 |
120.0 |
120.0 |
H28 |
CAC |
H29 |
H30 |
240.0 |
240.0 |
H28 |
CAC |
H30 |
H29 |
120.0 |
120.0 |
H31 |
CAY |
CAV |
CAK |
206.5 |
83.6 |
H31 |
CAY |
NAS |
H17 |
34.1 |
0.7 |
H32 |
CAJ |
CAH |
CAG |
180.5 |
180.0 |
H32 |
CAJ |
CAH |
H33 |
0.4 |
360.0 |
H32 |
CAJ |
CAV |
CAK |
179.2 |
180.3 |
CAJ |
CAH |
H33 |
CAG |
180.0 |
180.1 |
H33 |
CAH |
CAJ |
H32 |
0.4 |
360.0 |
H33 |
CAH |
CAG |
CAI |
179.9 |
180.0 |
H33 |
CAH |
CAG |
H34 |
359.9 |
360.0 |
CAH |
CAG |
H34 |
CAI |
180.0 |
180.0 |
H34 |
CAG |
CAH |
H33 |
359.9 |
360.0 |
H34 |
CAG |
CAI |
H35 |
0.0 |
0.0 |
H35 |
CAI |
CAG |
H34 |
0.0 |
0.0 |
CAV |
CAK |
H36 |
CAI |
180.0 |
179.8 |
H36 |
CAK |
CAI |
H35 |
359.6 |
0.1 |